RNA–Protein interactions for RNA: ENST00000533776.1

BRCA2-205, Transcript of BRCA2, DNA repair associated, humanhuman

TSL 3

Gene BRCA2, Length 523 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA2-205ENST00000533776 AEBP2Q6ZN18 517 aaPredicted RBP24.32■■□□□ 1.48
BRCA2-205ENST00000533776 CHIC1Q5VXU3 224 aa22.64■■□□□ 1.21
BRCA2-205ENST00000533776 SENP3Q9H4L4 574 aaPredicted RBP20.85■□□□□ 0.93
BRCA2-205ENST00000533776 PHF23Q9BUL5 403 aaPredicted RBP20.46■□□□□ 0.87
BRCA2-205ENST00000533776 POTEDQ86YR6 584 aa19.84■□□□□ 0.77
BRCA2-205ENST00000533776 FOXD1Q16676 465 aa19.57■□□□□ 0.72
BRCA2-205ENST00000533776 MSH5O43196 834 aa18.65■□□□□ 0.58
BRCA2-205ENST00000533776 PIAS4Q8N2W9 510 aaPredicted RBP18.01■□□□□ 0.47
BRCA2-205ENST00000533776 PPP6R1Q9UPN7 881 aa17.6■□□□□ 0.41
BRCA2-205ENST00000533776 ADRA2BP18089 450 aa17.45■□□□□ 0.38
BRCA2-205ENST00000533776 PLPPR3Q6T4P5 718 aa17.24■□□□□ 0.35
BRCA2-205ENST00000533776 CACNB1Q02641 598 aaPredicted RBP16.55■□□□□ 0.24
BRCA2-205ENST00000533776 DMRT2Q9Y5R5 561 aa16.41■□□□□ 0.22
BRCA2-205ENST00000533776 MAPK8IP2Q13387 824 aaPredicted RBP16.33■□□□□ 0.2
BRCA2-205ENST00000533776 SCAF1Q9H7N4 1312 aaKnown RBP15.93■□□□□ 0.14
BRCA2-205ENST00000533776 RNF39Q9H2S5 420 aa15.86■□□□□ 0.13
BRCA2-205ENST00000533776 DCAF8L1A6NGE4 600 aa15.68■□□□□ 0.1
BRCA2-205ENST00000533776 C1QBPQ07021 282 aaKnown RBP15.56■□□□□ 0.08
BRCA2-205ENST00000533776 HOXD11P31277 338 aaPredicted RBP15.45■□□□□ 0.06
BRCA2-205ENST00000533776 POTEHQ6S545 545 aa15.34■□□□□ 0.05
BRCA2-205ENST00000533776 DNAJC5BQ9UF47 199 aa15.14■□□□□ 0.01
BRCA2-205ENST00000533776 RNF216Q9NWF9 866 aaPredicted RBP15.05■□□□□ -0
BRCA2-205ENST00000533776 PPP4R3CPQ6ZMV5 832 aa15□□□□□ -0.01
BRCA2-205ENST00000533776 CNKSR2Q8WXI2 1034 aa14.94□□□□□ -0.02
BRCA2-205ENST00000533776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.64□□□□□ -0.07
BRCA2-205ENST00000533776 DSG3P32926 999 aa14.53□□□□□ -0.08
BRCA2-205ENST00000533776 SPINK5Q9NQ38 1064 aaPredicted RBP14.35□□□□□ -0.11
BRCA2-205ENST00000533776 CAPN15O75808 1086 aa14.31□□□□□ -0.12
BRCA2-205ENST00000533776 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
BRCA2-205ENST00000533776 NCBP3Q53F19 620 aaKnown RBP14.09□□□□□ -0.15
BRCA2-205ENST00000533776 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
BRCA2-205ENST00000533776 SP7Q8TDD2 431 aaPredicted RBP13.94□□□□□ -0.18
BRCA2-205ENST00000533776 CHRDL2Q6WN34 429 aa13.93□□□□□ -0.18
BRCA2-205ENST00000533776 ABCB7O75027 752 aa13.91□□□□□ -0.18
BRCA2-205ENST00000533776 TRHP20396 242 aaPredicted RBP13.86□□□□□ -0.19
BRCA2-205ENST00000533776 RBM42Q9BTD8 480 aaKnown RBP13.84□□□□□ -0.19
BRCA2-205ENST00000533776 ZNF219Q9P2Y4 722 aaPredicted RBP13.81□□□□□ -0.2
BRCA2-205ENST00000533776 APLP2Q06481 763 aa13.71□□□□□ -0.21
BRCA2-205ENST00000533776 SLC4A2P04920 1241 aa13.59□□□□□ -0.23
BRCA2-205ENST00000533776 KCNA4P22459 653 aa13.54□□□□□ -0.24
BRCA2-205ENST00000533776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.5□□□□□ -0.25
BRCA2-205ENST00000533776 HNRNPUL2Q1KMD3 747 aaKnown RBP13.5□□□□□ -0.25
BRCA2-205ENST00000533776 PIP4P2Q8N4L2 257 aa13.41□□□□□ -0.26
BRCA2-205ENST00000533776 HAX1O00165 279 aa13.38□□□□□ -0.27
BRCA2-205ENST00000533776 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
BRCA2-205ENST00000533776 AKT1S1Q96B36 256 aa13.35□□□□□ -0.27
BRCA2-205ENST00000533776 POLA2Q14181 598 aa13.31□□□□□ -0.28
BRCA2-205ENST00000533776 REM2Q8IYK8 340 aaPredicted RBP13.23□□□□□ -0.29
BRCA2-205ENST00000533776 EVX2Q03828 476 aa13.22□□□□□ -0.29
BRCA2-205ENST00000533776 FXR2P51116 673 aaKnown RBP eCLIP13.2□□□□□ -0.3
BRCA2-205ENST00000533776 PITPNM1O00562 1244 aa13.09□□□□□ -0.31
BRCA2-205ENST00000533776 LHX8Q68G74 356 aa13.06□□□□□ -0.32
BRCA2-205ENST00000533776 PLSCR2Q9NRY7 297 aa12.96□□□□□ -0.33
BRCA2-205ENST00000533776 ZBTB12Q9Y330 459 aaPredicted RBP12.93□□□□□ -0.34
BRCA2-205ENST00000533776 OSCARQ8IYS5 282 aa12.91□□□□□ -0.34
BRCA2-205ENST00000533776 MYCNP04198 464 aaPredicted RBP12.89□□□□□ -0.35
BRCA2-205ENST00000533776 GABBR2O75899 941 aa12.84□□□□□ -0.35
BRCA2-205ENST00000533776 SLC4A1APQ9BWU0 796 aaKnown RBP12.82□□□□□ -0.36
BRCA2-205ENST00000533776 C19orf67A6NJJ6 358 aa12.81□□□□□ -0.36
BRCA2-205ENST00000533776 PRKAR2AP13861 404 aaKnown RBP12.72□□□□□ -0.37
BRCA2-205ENST00000533776 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
BRCA2-205ENST00000533776 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
BRCA2-205ENST00000533776 FOXD4L1Q9NU39 408 aa12.57□□□□□ -0.4
BRCA2-205ENST00000533776 SPDYE2BA6NHP3 402 aa12.49□□□□□ -0.41
BRCA2-205ENST00000533776 SPDYE6P0CI01 402 aa12.49□□□□□ -0.41
BRCA2-205ENST00000533776 SPDYE2Q495Y8 402 aa12.49□□□□□ -0.41
BRCA2-205ENST00000533776 SPDYE1Q8NFV5 336 aaPredicted RBP12.49□□□□□ -0.41
BRCA2-205ENST00000533776 CLEC11AQ9Y240 323 aa12.48□□□□□ -0.41
BRCA2-205ENST00000533776 ZBTB22O15209 634 aa12.44□□□□□ -0.42
BRCA2-205ENST00000533776 CHADLQ6NUI6 762 aa12.38□□□□□ -0.43
BRCA2-205ENST00000533776 POTEMA6NI47 508 aa12.33□□□□□ -0.44
BRCA2-205ENST00000533776 CLCN6P51797 869 aa12.31□□□□□ -0.44
BRCA2-205ENST00000533776 OTUD5Q96G74 571 aa12.29□□□□□ -0.44
BRCA2-205ENST00000533776 POTEGQ6S5H5 508 aa12.26□□□□□ -0.45
BRCA2-205ENST00000533776 CD44P16070 742 aaKnown RBP12.25□□□□□ -0.45
BRCA2-205ENST00000533776 SSUH2Q9Y2M2 353 aa12.25□□□□□ -0.45
BRCA2-205ENST00000533776 DCBLD2Q96PD2 775 aa12.24□□□□□ -0.45
BRCA2-205ENST00000533776 PCDH10Q9P2E7 1040 aa12.21□□□□□ -0.45
BRCA2-205ENST00000533776 FBLN2P98095 1184 aa12.2□□□□□ -0.46
BRCA2-205ENST00000533776 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
BRCA2-205ENST00000533776 POTEB2H3BUK9 544 aa12.16□□□□□ -0.46
BRCA2-205ENST00000533776 PRR29P0C7W0 189 aa12.16□□□□□ -0.46
BRCA2-205ENST00000533776 ATXN8OSP0DMR3 200 aa12.13□□□□□ -0.47
BRCA2-205ENST00000533776 FARP1Q9Y4F1 1045 aaPredicted RBP12.12□□□□□ -0.47
BRCA2-205ENST00000533776 MKRN4PQ13434 485 aaPredicted RBP12.08□□□□□ -0.48
BRCA2-205ENST00000533776 ZNF579Q8NAF0 562 aaKnown RBP12.06□□□□□ -0.48
BRCA2-205ENST00000533776 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
BRCA2-205ENST00000533776 EHMT2Q96KQ7 1210 aa12□□□□□ -0.49
BRCA2-205ENST00000533776 GALR2O43603 387 aaPredicted RBP11.97□□□□□ -0.49
BRCA2-205ENST00000533776 PABPN1Q86U42 306 aaKnown RBP eCLIP11.96□□□□□ -0.49
BRCA2-205ENST00000533776 LCE2DQ5TA82 110 aaPredicted RBP11.93□□□□□ -0.5
BRCA2-205ENST00000533776 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
BRCA2-205ENST00000533776 PELP1Q8IZL8 1130 aaKnown RBP11.85□□□□□ -0.51
BRCA2-205ENST00000533776 POTEJP0CG39 1038 aa11.83□□□□□ -0.52
BRCA2-205ENST00000533776 FAM163AQ96GL9 167 aaPredicted RBP11.77□□□□□ -0.53
BRCA2-205ENST00000533776 MAMSTRQ6ZN01 415 aa11.74□□□□□ -0.53
BRCA2-205ENST00000533776 METRNQ9UJH8 293 aa11.72□□□□□ -0.53
BRCA2-205ENST00000533776 PHF12Q96QT6 1004 aa11.7□□□□□ -0.54
BRCA2-205ENST00000533776 C7P10643 843 aa11.68□□□□□ -0.54
BRCA2-205ENST00000533776 ASTLQ6HA08 431 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms