RNA–Protein interactions for RNA: ENST00000524094.1

LINC01339-204, Transcript of long intergenic non-protein coding RNA 1339, humanhuman

TSL 3

Gene LINC01339, Length 269 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01339-204ENST00000524094 AEBP2Q6ZN18 517 aaPredicted RBP18.01■□□□□ 0.47
LINC01339-204ENST00000524094 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
LINC01339-204ENST00000524094 POTEDQ86YR6 584 aa15.88■□□□□ 0.13
LINC01339-204ENST00000524094 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
LINC01339-204ENST00000524094 PHF23Q9BUL5 403 aaPredicted RBP15.19■□□□□ 0.02
LINC01339-204ENST00000524094 FOXD1Q16676 465 aa14.65□□□□□ -0.06
LINC01339-204ENST00000524094 MSH5O43196 834 aa14.16□□□□□ -0.14
LINC01339-204ENST00000524094 PIAS4Q8N2W9 510 aaPredicted RBP13.4□□□□□ -0.26
LINC01339-204ENST00000524094 CACNB1Q02641 598 aaPredicted RBP12.91□□□□□ -0.34
LINC01339-204ENST00000524094 PPP6R1Q9UPN7 881 aa12.78□□□□□ -0.36
LINC01339-204ENST00000524094 ADRA2BP18089 450 aa12.67□□□□□ -0.38
LINC01339-204ENST00000524094 POTEHQ6S545 545 aa12.21□□□□□ -0.45
LINC01339-204ENST00000524094 PLPPR3Q6T4P5 718 aa12.19□□□□□ -0.46
LINC01339-204ENST00000524094 DMRT2Q9Y5R5 561 aa12.13□□□□□ -0.47
LINC01339-204ENST00000524094 MAPK8IP2Q13387 824 aaPredicted RBP12.01□□□□□ -0.49
LINC01339-204ENST00000524094 RNF39Q9H2S5 420 aa11.97□□□□□ -0.49
LINC01339-204ENST00000524094 DCAF8L1A6NGE4 600 aa11.75□□□□□ -0.53
LINC01339-204ENST00000524094 C1QBPQ07021 282 aaKnown RBP11.73□□□□□ -0.53
LINC01339-204ENST00000524094 SCAF1Q9H7N4 1312 aaKnown RBP11.59□□□□□ -0.55
LINC01339-204ENST00000524094 HOXD11P31277 338 aaPredicted RBP11.22□□□□□ -0.61
LINC01339-204ENST00000524094 DNAJC5BQ9UF47 199 aa11.04□□□□□ -0.64
LINC01339-204ENST00000524094 SP7Q8TDD2 431 aaPredicted RBP10.88□□□□□ -0.67
LINC01339-204ENST00000524094 DSG3P32926 999 aa10.82□□□□□ -0.68
LINC01339-204ENST00000524094 RNF216Q9NWF9 866 aaPredicted RBP10.81□□□□□ -0.68
LINC01339-204ENST00000524094 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.71□□□□□ -0.69
LINC01339-204ENST00000524094 CAPN15O75808 1086 aa10.61□□□□□ -0.71
LINC01339-204ENST00000524094 CNKSR2Q8WXI2 1034 aa10.61□□□□□ -0.71
LINC01339-204ENST00000524094 CHRDL2Q6WN34 429 aa10.6□□□□□ -0.71
LINC01339-204ENST00000524094 PLSCR2Q9NRY7 297 aa10.6□□□□□ -0.71
LINC01339-204ENST00000524094 SPINK5Q9NQ38 1064 aaPredicted RBP10.56□□□□□ -0.72
LINC01339-204ENST00000524094 PPP4R3CPQ6ZMV5 832 aa10.53□□□□□ -0.72
LINC01339-204ENST00000524094 RBM42Q9BTD8 480 aaKnown RBP10.34□□□□□ -0.75
LINC01339-204ENST00000524094 U3KPZ7 1027 aaPredicted RBP10.34□□□□□ -0.75
LINC01339-204ENST00000524094 HAX1O00165 279 aa10.26□□□□□ -0.77
LINC01339-204ENST00000524094 ABCB7O75027 752 aa10.26□□□□□ -0.77
LINC01339-204ENST00000524094 LHX8Q68G74 356 aa10.19□□□□□ -0.78
LINC01339-204ENST00000524094 TRHP20396 242 aaPredicted RBP10.15□□□□□ -0.78
LINC01339-204ENST00000524094 PIP4P2Q8N4L2 257 aa10.09□□□□□ -0.79
LINC01339-204ENST00000524094 ZNF219Q9P2Y4 722 aaPredicted RBP10.06□□□□□ -0.8
LINC01339-204ENST00000524094 EVX2Q03828 476 aa10.03□□□□□ -0.8
LINC01339-204ENST00000524094 APLP2Q06481 763 aa9.91□□□□□ -0.82
LINC01339-204ENST00000524094 AKT1S1Q96B36 256 aa9.85□□□□□ -0.83
LINC01339-204ENST00000524094 FXR2P51116 673 aaKnown RBP eCLIP9.83□□□□□ -0.84
LINC01339-204ENST00000524094 REM2Q8IYK8 340 aaPredicted RBP9.77□□□□□ -0.85
LINC01339-204ENST00000524094 NCBP3Q53F19 620 aaKnown RBP9.76□□□□□ -0.85
LINC01339-204ENST00000524094 GABBR2O75899 941 aa9.73□□□□□ -0.85
LINC01339-204ENST00000524094 PITPNM1O00562 1244 aa9.68□□□□□ -0.86
LINC01339-204ENST00000524094 POTEMA6NI47 508 aa9.67□□□□□ -0.86
LINC01339-204ENST00000524094 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.62□□□□□ -0.87
LINC01339-204ENST00000524094 NPM3O75607 178 aaKnown RBP9.62□□□□□ -0.87
LINC01339-204ENST00000524094 HNRNPUL2Q1KMD3 747 aaKnown RBP9.62□□□□□ -0.87
LINC01339-204ENST00000524094 POLA2Q14181 598 aa9.6□□□□□ -0.87
LINC01339-204ENST00000524094 POTEGQ6S5H5 508 aa9.6□□□□□ -0.87
LINC01339-204ENST00000524094 C19orf67A6NJJ6 358 aa9.56□□□□□ -0.88
LINC01339-204ENST00000524094 PCDH10Q9P2E7 1040 aa9.56□□□□□ -0.88
LINC01339-204ENST00000524094 POTEIP0CG38 1075 aa9.51□□□□□ -0.89
LINC01339-204ENST00000524094 SAMD1Q6SPF0 538 aaPredicted RBP9.51□□□□□ -0.89
LINC01339-204ENST00000524094 SLC4A2P04920 1241 aa9.5□□□□□ -0.89
LINC01339-204ENST00000524094 PRKAR2AP13861 404 aaKnown RBP9.43□□□□□ -0.9
LINC01339-204ENST00000524094 OTUD5Q96G74 571 aa9.39□□□□□ -0.91
LINC01339-204ENST00000524094 OSCARQ8IYS5 282 aa9.33□□□□□ -0.92
LINC01339-204ENST00000524094 ZBTB12Q9Y330 459 aaPredicted RBP9.28□□□□□ -0.92
LINC01339-204ENST00000524094 DCBLD2Q96PD2 775 aa9.23□□□□□ -0.93
LINC01339-204ENST00000524094 POTEB2H3BUK9 544 aa9.18□□□□□ -0.94
LINC01339-204ENST00000524094 CLCN6P51797 869 aa9.14□□□□□ -0.95
LINC01339-204ENST00000524094 CLEC11AQ9Y240 323 aa9.13□□□□□ -0.95
LINC01339-204ENST00000524094 LCE2DQ5TA82 110 aaPredicted RBP9.09□□□□□ -0.95
LINC01339-204ENST00000524094 CHADLQ6NUI6 762 aa9.07□□□□□ -0.96
LINC01339-204ENST00000524094 CD44P16070 742 aaKnown RBP9.05□□□□□ -0.96
LINC01339-204ENST00000524094 SPDYE1Q8NFV5 336 aaPredicted RBP9.05□□□□□ -0.96
LINC01339-204ENST00000524094 FAM163AQ96GL9 167 aaPredicted RBP9.03□□□□□ -0.96
LINC01339-204ENST00000524094 CDAN1Q8IWY9 1227 aa8.98□□□□□ -0.97
LINC01339-204ENST00000524094 SPDYE2BA6NHP3 402 aa8.91□□□□□ -0.98
LINC01339-204ENST00000524094 MYCNP04198 464 aaPredicted RBP8.91□□□□□ -0.98
LINC01339-204ENST00000524094 SPDYE6P0CI01 402 aa8.91□□□□□ -0.98
LINC01339-204ENST00000524094 SPDYE2Q495Y8 402 aa8.91□□□□□ -0.98
LINC01339-204ENST00000524094 MMRN1Q13201 1228 aa8.89□□□□□ -0.99
LINC01339-204ENST00000524094 GALR2O43603 387 aaPredicted RBP8.84□□□□□ -0.99
LINC01339-204ENST00000524094 POTEJP0CG39 1038 aa8.84□□□□□ -0.99
LINC01339-204ENST00000524094 MAMSTRQ6ZN01 415 aa8.84□□□□□ -0.99
LINC01339-204ENST00000524094 ZNF579Q8NAF0 562 aaKnown RBP8.84□□□□□ -0.99
LINC01339-204ENST00000524094 ATF5Q9Y2D1 282 aaPredicted RBP8.82□□□□□ -1
LINC01339-204ENST00000524094 FARP1Q9Y4F1 1045 aaPredicted RBP8.8□□□□□ -1
LINC01339-204ENST00000524094 PRR29P0C7W0 189 aa8.79□□□□□ -1
LINC01339-204ENST00000524094 SPNS2Q8IVW8 549 aa8.78□□□□□ -1
LINC01339-204ENST00000524094 PELP1Q8IZL8 1130 aaKnown RBP8.78□□□□□ -1
LINC01339-204ENST00000524094 KCNA4P22459 653 aa8.77□□□□□ -1.01
LINC01339-204ENST00000524094 ZRANB1Q9UGI0 708 aa8.75□□□□□ -1.01
LINC01339-204ENST00000524094 SCUBE2Q9NQ36 999 aa8.72□□□□□ -1.01
LINC01339-204ENST00000524094 METRNQ9UJH8 293 aa8.72□□□□□ -1.01
LINC01339-204ENST00000524094 C7P10643 843 aa8.65□□□□□ -1.02
LINC01339-204ENST00000524094 SLC39A7Q92504 469 aa8.64□□□□□ -1.03
LINC01339-204ENST00000524094 SSUH2Q9Y2M2 353 aa8.64□□□□□ -1.03
LINC01339-204ENST00000524094 ZNF692Q9BU19 519 aaPredicted RBP8.62□□□□□ -1.03
LINC01339-204ENST00000524094 FBLN2P98095 1184 aa8.56□□□□□ -1.04
LINC01339-204ENST00000524094 ASTLQ6HA08 431 aaPredicted RBP8.55□□□□□ -1.04
LINC01339-204ENST00000524094 ST18O60284 1047 aa8.52□□□□□ -1.05
LINC01339-204ENST00000524094 PHF12Q96QT6 1004 aa8.52□□□□□ -1.05
LINC01339-204ENST00000524094 ATMINO43313 823 aaPredicted RBP8.51□□□□□ -1.05
LINC01339-204ENST00000524094 PABPN1Q86U42 306 aaKnown RBP eCLIP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms