RNA–Protein interactions for RNA: ENST00000513600.5

TRAPPC11-210, Transcript of trafficking protein particle complex 11, humanhuman

TSL 3

Gene TRAPPC11, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-210ENST00000513600 AEBP2Q6ZN18 517 aaPredicted RBP34.21■■■■□ 3.07
TRAPPC11-210ENST00000513600 CHIC1Q5VXU3 224 aa33.33■■■□□ 2.93
TRAPPC11-210ENST00000513600 PHF23Q9BUL5 403 aaPredicted RBP29.26■■■□□ 2.27
TRAPPC11-210ENST00000513600 SENP3Q9H4L4 574 aaPredicted RBP29.14■■■□□ 2.26
TRAPPC11-210ENST00000513600 PLPPR3Q6T4P5 718 aa27.04■■□□□ 1.92
TRAPPC11-210ENST00000513600 FOXD1Q16676 465 aa27■■□□□ 1.91
TRAPPC11-210ENST00000513600 PPP6R1Q9UPN7 881 aa25.85■■□□□ 1.73
TRAPPC11-210ENST00000513600 ADRA2BP18089 450 aa25.84■■□□□ 1.73
TRAPPC11-210ENST00000513600 PIAS4Q8N2W9 510 aaPredicted RBP25.45■■□□□ 1.66
TRAPPC11-210ENST00000513600 MSH5O43196 834 aa25.02■■□□□ 1.6
TRAPPC11-210ENST00000513600 PPP4R3CPQ6ZMV5 832 aa23.79■■□□□ 1.4
TRAPPC11-210ENST00000513600 SCAF1Q9H7N4 1312 aaKnown RBP23.75■■□□□ 1.39
TRAPPC11-210ENST00000513600 MAPK8IP2Q13387 824 aaPredicted RBP23.46■■□□□ 1.35
TRAPPC11-210ENST00000513600 DMRT2Q9Y5R5 561 aa23.22■■□□□ 1.31
TRAPPC11-210ENST00000513600 NCBP3Q53F19 620 aaKnown RBP23.19■■□□□ 1.3
TRAPPC11-210ENST00000513600 CNKSR2Q8WXI2 1034 aa23.18■■□□□ 1.3
TRAPPC11-210ENST00000513600 KCNA4P22459 653 aa23.05■■□□□ 1.28
TRAPPC11-210ENST00000513600 POTEDQ86YR6 584 aa22.95■■□□□ 1.26
TRAPPC11-210ENST00000513600 NPM3O75607 178 aaKnown RBP22.77■■□□□ 1.24
TRAPPC11-210ENST00000513600 RNF216Q9NWF9 866 aaPredicted RBP22.76■■□□□ 1.23
TRAPPC11-210ENST00000513600 HOXD11P31277 338 aaPredicted RBP22.69■■□□□ 1.22
TRAPPC11-210ENST00000513600 DCAF8L1A6NGE4 600 aa22.21■■□□□ 1.15
TRAPPC11-210ENST00000513600 DNAJC5BQ9UF47 199 aa22.2■■□□□ 1.14
TRAPPC11-210ENST00000513600 SLC4A1APQ9BWU0 796 aaKnown RBP21.97■■□□□ 1.11
TRAPPC11-210ENST00000513600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.63■■□□□ 1.05
TRAPPC11-210ENST00000513600 SLC4A2P04920 1241 aa21.52■■□□□ 1.04
TRAPPC11-210ENST00000513600 RNF39Q9H2S5 420 aa21.39■■□□□ 1.01
TRAPPC11-210ENST00000513600 FOXD4L1Q9NU39 408 aa21.29■■□□□ 1
TRAPPC11-210ENST00000513600 U3KPZ7 1027 aaPredicted RBP21.23■□□□□ 0.99
TRAPPC11-210ENST00000513600 ZBTB22O15209 634 aa21.18■□□□□ 0.98
TRAPPC11-210ENST00000513600 C1QBPQ07021 282 aaKnown RBP21.15■□□□□ 0.98
TRAPPC11-210ENST00000513600 EHMT2Q96KQ7 1210 aa21.14■□□□□ 0.97
TRAPPC11-210ENST00000513600 MYCNP04198 464 aaPredicted RBP21.09■□□□□ 0.97
TRAPPC11-210ENST00000513600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.01■□□□□ 0.95
TRAPPC11-210ENST00000513600 HNRNPUL2Q1KMD3 747 aaKnown RBP21.01■□□□□ 0.95
TRAPPC11-210ENST00000513600 CSRNP3Q8WYN3 585 aa20.98■□□□□ 0.95
TRAPPC11-210ENST00000513600 CACNB1Q02641 598 aaPredicted RBP20.94■□□□□ 0.94
TRAPPC11-210ENST00000513600 SAMD1Q6SPF0 538 aaPredicted RBP20.9■□□□□ 0.94
TRAPPC11-210ENST00000513600 APLP2Q06481 763 aa20.84■□□□□ 0.93
TRAPPC11-210ENST00000513600 SPINK5Q9NQ38 1064 aaPredicted RBP20.65■□□□□ 0.9
TRAPPC11-210ENST00000513600 CAPN15O75808 1086 aa20.62■□□□□ 0.89
TRAPPC11-210ENST00000513600 ATXN8OSP0DMR3 200 aa20.62■□□□□ 0.89
TRAPPC11-210ENST00000513600 ZNF219Q9P2Y4 722 aaPredicted RBP20.52■□□□□ 0.88
TRAPPC11-210ENST00000513600 TRHP20396 242 aaPredicted RBP20.49■□□□□ 0.87
TRAPPC11-210ENST00000513600 ATF5Q9Y2D1 282 aaPredicted RBP20.46■□□□□ 0.87
TRAPPC11-210ENST00000513600 DSG3P32926 999 aa20.3■□□□□ 0.84
TRAPPC11-210ENST00000513600 ABCB7O75027 752 aa20.18■□□□□ 0.82
TRAPPC11-210ENST00000513600 POLA2Q14181 598 aa20.13■□□□□ 0.81
TRAPPC11-210ENST00000513600 ZBTB12Q9Y330 459 aaPredicted RBP19.85■□□□□ 0.77
TRAPPC11-210ENST00000513600 FBLN2P98095 1184 aa19.7■□□□□ 0.74
TRAPPC11-210ENST00000513600 MKRN4PQ13434 485 aaPredicted RBP19.57■□□□□ 0.72
TRAPPC11-210ENST00000513600 OSCARQ8IYS5 282 aa19.42■□□□□ 0.7
TRAPPC11-210ENST00000513600 RBM42Q9BTD8 480 aaKnown RBP19.4■□□□□ 0.7
TRAPPC11-210ENST00000513600 SPDYE2BA6NHP3 402 aa19.28■□□□□ 0.68
TRAPPC11-210ENST00000513600 SPDYE6P0CI01 402 aa19.28■□□□□ 0.68
TRAPPC11-210ENST00000513600 SPDYE2Q495Y8 402 aa19.28■□□□□ 0.68
TRAPPC11-210ENST00000513600 ZNF692Q9BU19 519 aaPredicted RBP19.16■□□□□ 0.66
TRAPPC11-210ENST00000513600 AKT1S1Q96B36 256 aa19.13■□□□□ 0.65
TRAPPC11-210ENST00000513600 SPDYE4A6NLX3 237 aa19.12■□□□□ 0.65
TRAPPC11-210ENST00000513600 SSUH2Q9Y2M2 353 aa19.09■□□□□ 0.65
TRAPPC11-210ENST00000513600 FKBP8Q14318 412 aa18.99■□□□□ 0.63
TRAPPC11-210ENST00000513600 REM2Q8IYK8 340 aaPredicted RBP18.91■□□□□ 0.62
TRAPPC11-210ENST00000513600 PABPN1Q86U42 306 aaKnown RBP eCLIP18.89■□□□□ 0.61
TRAPPC11-210ENST00000513600 PROM2Q8N271 834 aa18.78■□□□□ 0.6
TRAPPC11-210ENST00000513600 SPDYE1Q8NFV5 336 aaPredicted RBP18.75■□□□□ 0.59
TRAPPC11-210ENST00000513600 PITPNM1O00562 1244 aa18.68■□□□□ 0.58
TRAPPC11-210ENST00000513600 CLEC11AQ9Y240 323 aa18.63■□□□□ 0.57
TRAPPC11-210ENST00000513600 STAG3Q9UJ98 1225 aa18.61■□□□□ 0.57
TRAPPC11-210ENST00000513600 CHRDL2Q6WN34 429 aa18.6■□□□□ 0.57
TRAPPC11-210ENST00000513600 PRR29P0C7W0 189 aa18.47■□□□□ 0.55
TRAPPC11-210ENST00000513600 FBXO3Q9UK99 471 aa18.42■□□□□ 0.54
TRAPPC11-210ENST00000513600 FXR2P51116 673 aaKnown RBP eCLIP18.37■□□□□ 0.53
TRAPPC11-210ENST00000513600 PIP4P2Q8N4L2 257 aa18.33■□□□□ 0.52
TRAPPC11-210ENST00000513600 PRKAR2AP13861 404 aaKnown RBP18.22■□□□□ 0.51
TRAPPC11-210ENST00000513600 CREBZFQ9NS37 354 aa18.18■□□□□ 0.5
TRAPPC11-210ENST00000513600 POTEHQ6S545 545 aa18.16■□□□□ 0.5
TRAPPC11-210ENST00000513600 CHADLQ6NUI6 762 aa18.15■□□□□ 0.5
TRAPPC11-210ENST00000513600 MIER1Q8N108 512 aa18.15■□□□□ 0.5
TRAPPC11-210ENST00000513600 PLEKHG5O94827 1062 aa18.13■□□□□ 0.49
TRAPPC11-210ENST00000513600 VASPP50552 380 aaPredicted RBP18.12■□□□□ 0.49
TRAPPC11-210ENST00000513600 PLCD3Q8N3E9 789 aa18.12■□□□□ 0.49
TRAPPC11-210ENST00000513600 FARP1Q9Y4F1 1045 aaPredicted RBP18.02■□□□□ 0.48
TRAPPC11-210ENST00000513600 ZBTB47Q9UFB7 747 aaPredicted RBP17.97■□□□□ 0.47
TRAPPC11-210ENST00000513600 MNX1P50219 401 aaPredicted RBP17.95■□□□□ 0.46
TRAPPC11-210ENST00000513600 NPM1P06748 294 aaKnown RBP eCLIP17.94■□□□□ 0.46
TRAPPC11-210ENST00000513600 KLHL34Q8N239 644 aa17.86■□□□□ 0.45
TRAPPC11-210ENST00000513600 IFNLR1Q8IU57 520 aaPredicted RBP17.84■□□□□ 0.45
TRAPPC11-210ENST00000513600 HAX1O00165 279 aa17.79■□□□□ 0.44
TRAPPC11-210ENST00000513600 C19orf67A6NJJ6 358 aa17.76■□□□□ 0.43
TRAPPC11-210ENST00000513600 SPOCK2Q92563 424 aa17.7■□□□□ 0.42
TRAPPC11-210ENST00000513600 CD44P16070 742 aaKnown RBP17.69■□□□□ 0.42
TRAPPC11-210ENST00000513600 NUBP1P53384 320 aa17.69■□□□□ 0.42
TRAPPC11-210ENST00000513600 PAK3O75914 559 aaPredicted RBP17.66■□□□□ 0.42
TRAPPC11-210ENST00000513600 RASEFQ8IZ41 740 aa17.62■□□□□ 0.41
TRAPPC11-210ENST00000513600 FAM212AQ96EL1 285 aa17.58■□□□□ 0.4
TRAPPC11-210ENST00000513600 EVX2Q03828 476 aa17.57■□□□□ 0.4
TRAPPC11-210ENST00000513600 TSPYL2Q9H2G4 693 aaPredicted RBP17.57■□□□□ 0.4
TRAPPC11-210ENST00000513600 ZRANB1Q9UGI0 708 aa17.57■□□□□ 0.4
TRAPPC11-210ENST00000513600 DCAF8Q5TAQ9 597 aa17.52■□□□□ 0.4
TRAPPC11-210ENST00000513600 GSE1Q14687 1217 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms