RNA–Protein interactions for RNA: ENST00000513064.1

CHD1-210, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 2

Gene CHD1, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-210ENST00000513064 AEBP2Q6ZN18 517 aaPredicted RBP25.08■■□□□ 1.61
CHD1-210ENST00000513064 CHIC1Q5VXU3 224 aa24.52■■□□□ 1.52
CHD1-210ENST00000513064 PHF23Q9BUL5 403 aaPredicted RBP21.58■■□□□ 1.05
CHD1-210ENST00000513064 SENP3Q9H4L4 574 aaPredicted RBP21.28■■□□□ 1
CHD1-210ENST00000513064 PLPPR3Q6T4P5 718 aa19.92■□□□□ 0.78
CHD1-210ENST00000513064 FOXD1Q16676 465 aa19.74■□□□□ 0.75
CHD1-210ENST00000513064 PPP6R1Q9UPN7 881 aa19.03■□□□□ 0.64
CHD1-210ENST00000513064 ADRA2BP18089 450 aa18.99■□□□□ 0.63
CHD1-210ENST00000513064 PIAS4Q8N2W9 510 aaPredicted RBP18.59■□□□□ 0.57
CHD1-210ENST00000513064 MSH5O43196 834 aa18.19■□□□□ 0.5
CHD1-210ENST00000513064 PPP4R3CPQ6ZMV5 832 aa17.54■□□□□ 0.4
CHD1-210ENST00000513064 SCAF1Q9H7N4 1312 aaKnown RBP17.39■□□□□ 0.37
CHD1-210ENST00000513064 MAPK8IP2Q13387 824 aaPredicted RBP17.22■□□□□ 0.35
CHD1-210ENST00000513064 KCNA4P22459 653 aa17.17■□□□□ 0.34
CHD1-210ENST00000513064 NCBP3Q53F19 620 aaKnown RBP17.1■□□□□ 0.33
CHD1-210ENST00000513064 CNKSR2Q8WXI2 1034 aa17.06■□□□□ 0.32
CHD1-210ENST00000513064 DMRT2Q9Y5R5 561 aa16.99■□□□□ 0.31
CHD1-210ENST00000513064 NPM3O75607 178 aaKnown RBP16.85■□□□□ 0.29
CHD1-210ENST00000513064 RNF216Q9NWF9 866 aaPredicted RBP16.73■□□□□ 0.27
CHD1-210ENST00000513064 HOXD11P31277 338 aaPredicted RBP16.67■□□□□ 0.26
CHD1-210ENST00000513064 POTEDQ86YR6 584 aa16.51■□□□□ 0.23
CHD1-210ENST00000513064 DNAJC5BQ9UF47 199 aa16.45■□□□□ 0.22
CHD1-210ENST00000513064 SLC4A1APQ9BWU0 796 aaKnown RBP16.34■□□□□ 0.21
CHD1-210ENST00000513064 DCAF8L1A6NGE4 600 aa16.18■□□□□ 0.18
CHD1-210ENST00000513064 SLC4A2P04920 1241 aa15.92■□□□□ 0.14
CHD1-210ENST00000513064 EHMT2Q96KQ7 1210 aa15.87■□□□□ 0.13
CHD1-210ENST00000513064 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.84■□□□□ 0.13
CHD1-210ENST00000513064 ZBTB22O15209 634 aa15.81■□□□□ 0.12
CHD1-210ENST00000513064 FOXD4L1Q9NU39 408 aa15.79■□□□□ 0.12
CHD1-210ENST00000513064 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
CHD1-210ENST00000513064 RNF39Q9H2S5 420 aa15.61■□□□□ 0.09
CHD1-210ENST00000513064 U3KPZ7 1027 aaPredicted RBP15.6■□□□□ 0.09
CHD1-210ENST00000513064 MYCNP04198 464 aaPredicted RBP15.56■□□□□ 0.08
CHD1-210ENST00000513064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.43■□□□□ 0.06
CHD1-210ENST00000513064 C1QBPQ07021 282 aaKnown RBP15.43■□□□□ 0.06
CHD1-210ENST00000513064 HNRNPUL2Q1KMD3 747 aaKnown RBP15.43■□□□□ 0.06
CHD1-210ENST00000513064 SAMD1Q6SPF0 538 aaPredicted RBP15.37■□□□□ 0.05
CHD1-210ENST00000513064 ATXN8OSP0DMR3 200 aa15.28■□□□□ 0.04
CHD1-210ENST00000513064 APLP2Q06481 763 aa15.24■□□□□ 0.03
CHD1-210ENST00000513064 SPINK5Q9NQ38 1064 aaPredicted RBP15.15■□□□□ 0.02
CHD1-210ENST00000513064 CACNB1Q02641 598 aaPredicted RBP15.14■□□□□ 0.01
CHD1-210ENST00000513064 ATF5Q9Y2D1 282 aaPredicted RBP15.14■□□□□ 0.01
CHD1-210ENST00000513064 CAPN15O75808 1086 aa15.06■□□□□ 0
CHD1-210ENST00000513064 ZNF219Q9P2Y4 722 aaPredicted RBP15.03■□□□□ -0
CHD1-210ENST00000513064 TRHP20396 242 aaPredicted RBP15□□□□□ -0.01
CHD1-210ENST00000513064 DSG3P32926 999 aa14.85□□□□□ -0.03
CHD1-210ENST00000513064 POLA2Q14181 598 aa14.79□□□□□ -0.04
CHD1-210ENST00000513064 ABCB7O75027 752 aa14.77□□□□□ -0.05
CHD1-210ENST00000513064 ZBTB12Q9Y330 459 aaPredicted RBP14.57□□□□□ -0.08
CHD1-210ENST00000513064 MKRN4PQ13434 485 aaPredicted RBP14.51□□□□□ -0.09
CHD1-210ENST00000513064 FBLN2P98095 1184 aa14.49□□□□□ -0.09
CHD1-210ENST00000513064 OSCARQ8IYS5 282 aa14.27□□□□□ -0.13
CHD1-210ENST00000513064 FKBP8Q14318 412 aa14.19□□□□□ -0.14
CHD1-210ENST00000513064 SPDYE2BA6NHP3 402 aa14.18□□□□□ -0.14
CHD1-210ENST00000513064 SPDYE6P0CI01 402 aa14.18□□□□□ -0.14
CHD1-210ENST00000513064 SPDYE2Q495Y8 402 aa14.18□□□□□ -0.14
CHD1-210ENST00000513064 SPDYE4A6NLX3 237 aa14.17□□□□□ -0.14
CHD1-210ENST00000513064 RBM42Q9BTD8 480 aaKnown RBP14.14□□□□□ -0.15
CHD1-210ENST00000513064 ZNF692Q9BU19 519 aaPredicted RBP14.11□□□□□ -0.15
CHD1-210ENST00000513064 SSUH2Q9Y2M2 353 aa14.08□□□□□ -0.16
CHD1-210ENST00000513064 PROM2Q8N271 834 aa14□□□□□ -0.17
CHD1-210ENST00000513064 AKT1S1Q96B36 256 aa13.99□□□□□ -0.17
CHD1-210ENST00000513064 PABPN1Q86U42 306 aaKnown RBP eCLIP13.92□□□□□ -0.18
CHD1-210ENST00000513064 REM2Q8IYK8 340 aaPredicted RBP13.85□□□□□ -0.19
CHD1-210ENST00000513064 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
CHD1-210ENST00000513064 STAG3Q9UJ98 1225 aa13.72□□□□□ -0.21
CHD1-210ENST00000513064 FBXO3Q9UK99 471 aa13.72□□□□□ -0.21
CHD1-210ENST00000513064 PITPNM1O00562 1244 aa13.67□□□□□ -0.22
CHD1-210ENST00000513064 CLEC11AQ9Y240 323 aa13.64□□□□□ -0.23
CHD1-210ENST00000513064 PRR29P0C7W0 189 aa13.55□□□□□ -0.24
CHD1-210ENST00000513064 CHRDL2Q6WN34 429 aa13.54□□□□□ -0.24
CHD1-210ENST00000513064 VASPP50552 380 aaPredicted RBP13.52□□□□□ -0.25
CHD1-210ENST00000513064 FXR2P51116 673 aaKnown RBP eCLIP13.43□□□□□ -0.26
CHD1-210ENST00000513064 MIER1Q8N108 512 aa13.43□□□□□ -0.26
CHD1-210ENST00000513064 PLCD3Q8N3E9 789 aa13.4□□□□□ -0.26
CHD1-210ENST00000513064 CREBZFQ9NS37 354 aa13.4□□□□□ -0.26
CHD1-210ENST00000513064 PIP4P2Q8N4L2 257 aa13.38□□□□□ -0.27
CHD1-210ENST00000513064 PLEKHG5O94827 1062 aa13.35□□□□□ -0.27
CHD1-210ENST00000513064 IFNLR1Q8IU57 520 aaPredicted RBP13.35□□□□□ -0.27
CHD1-210ENST00000513064 PRKAR2AP13861 404 aaKnown RBP13.32□□□□□ -0.28
CHD1-210ENST00000513064 CHADLQ6NUI6 762 aa13.31□□□□□ -0.28
CHD1-210ENST00000513064 MNX1P50219 401 aaPredicted RBP13.29□□□□□ -0.28
CHD1-210ENST00000513064 ZBTB47Q9UFB7 747 aaPredicted RBP13.28□□□□□ -0.28
CHD1-210ENST00000513064 KLHL34Q8N239 644 aa13.25□□□□□ -0.29
CHD1-210ENST00000513064 FARP1Q9Y4F1 1045 aaPredicted RBP13.23□□□□□ -0.29
CHD1-210ENST00000513064 NPM1P06748 294 aaKnown RBP eCLIP13.17□□□□□ -0.3
CHD1-210ENST00000513064 SPOCK2Q92563 424 aa13.17□□□□□ -0.3
CHD1-210ENST00000513064 NUBP1P53384 320 aa13.11□□□□□ -0.31
CHD1-210ENST00000513064 POTEHQ6S545 545 aa13.09□□□□□ -0.31
CHD1-210ENST00000513064 RASEFQ8IZ41 740 aa13.04□□□□□ -0.32
CHD1-210ENST00000513064 AMER1Q5JTC6 1135 aaPredicted RBP12.99□□□□□ -0.33
CHD1-210ENST00000513064 FAM212AQ96EL1 285 aa12.98□□□□□ -0.33
CHD1-210ENST00000513064 C19orf67A6NJJ6 358 aa12.97□□□□□ -0.33
CHD1-210ENST00000513064 GSE1Q14687 1217 aa12.95□□□□□ -0.34
CHD1-210ENST00000513064 RTN4Q9NQC3 1192 aaKnown RBP12.95□□□□□ -0.34
CHD1-210ENST00000513064 CD44P16070 742 aaKnown RBP12.94□□□□□ -0.34
CHD1-210ENST00000513064 DCAF8Q5TAQ9 597 aa12.94□□□□□ -0.34
CHD1-210ENST00000513064 TSPYL2Q9H2G4 693 aaPredicted RBP12.93□□□□□ -0.34
CHD1-210ENST00000513064 CIZ1Q9ULV3 898 aaPredicted RBP12.93□□□□□ -0.34
CHD1-210ENST00000513064 HAX1O00165 279 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms