RNA–Protein interactions for RNA: ENST00000509429.1

NIPBL-206, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 586 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-206ENST00000509429 AEBP2Q6ZN18 517 aaPredicted RBP31.79■■■□□ 2.68
NIPBL-206ENST00000509429 CHIC1Q5VXU3 224 aa29.75■■■□□ 2.35
NIPBL-206ENST00000509429 SENP3Q9H4L4 574 aaPredicted RBP27.35■■□□□ 1.97
NIPBL-206ENST00000509429 PHF23Q9BUL5 403 aaPredicted RBP26.82■■□□□ 1.88
NIPBL-206ENST00000509429 POTEDQ86YR6 584 aa25.75■■□□□ 1.71
NIPBL-206ENST00000509429 FOXD1Q16676 465 aa25.6■■□□□ 1.69
NIPBL-206ENST00000509429 MSH5O43196 834 aa24.44■■□□□ 1.5
NIPBL-206ENST00000509429 PIAS4Q8N2W9 510 aaPredicted RBP23.65■■□□□ 1.38
NIPBL-206ENST00000509429 PPP6R1Q9UPN7 881 aa23.05■■□□□ 1.28
NIPBL-206ENST00000509429 ADRA2BP18089 450 aa22.91■■□□□ 1.26
NIPBL-206ENST00000509429 PLPPR3Q6T4P5 718 aa22.78■■□□□ 1.24
NIPBL-206ENST00000509429 CACNB1Q02641 598 aaPredicted RBP21.65■■□□□ 1.06
NIPBL-206ENST00000509429 DMRT2Q9Y5R5 561 aa21.5■■□□□ 1.03
NIPBL-206ENST00000509429 MAPK8IP2Q13387 824 aaPredicted RBP21.38■■□□□ 1.01
NIPBL-206ENST00000509429 SCAF1Q9H7N4 1312 aaKnown RBP21.04■□□□□ 0.96
NIPBL-206ENST00000509429 RNF39Q9H2S5 420 aa20.73■□□□□ 0.91
NIPBL-206ENST00000509429 DCAF8L1A6NGE4 600 aa20.67■□□□□ 0.9
NIPBL-206ENST00000509429 C1QBPQ07021 282 aaKnown RBP20.39■□□□□ 0.85
NIPBL-206ENST00000509429 HOXD11P31277 338 aaPredicted RBP20.27■□□□□ 0.84
NIPBL-206ENST00000509429 POTEHQ6S545 545 aa19.97■□□□□ 0.79
NIPBL-206ENST00000509429 DNAJC5BQ9UF47 199 aa19.84■□□□□ 0.77
NIPBL-206ENST00000509429 RNF216Q9NWF9 866 aaPredicted RBP19.82■□□□□ 0.76
NIPBL-206ENST00000509429 PPP4R3CPQ6ZMV5 832 aa19.8■□□□□ 0.76
NIPBL-206ENST00000509429 CNKSR2Q8WXI2 1034 aa19.71■□□□□ 0.75
NIPBL-206ENST00000509429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.32■□□□□ 0.68
NIPBL-206ENST00000509429 DSG3P32926 999 aa19.02■□□□□ 0.64
NIPBL-206ENST00000509429 CAPN15O75808 1086 aa18.87■□□□□ 0.61
NIPBL-206ENST00000509429 SPINK5Q9NQ38 1064 aaPredicted RBP18.82■□□□□ 0.6
NIPBL-206ENST00000509429 U3KPZ7 1027 aaPredicted RBP18.75■□□□□ 0.59
NIPBL-206ENST00000509429 NCBP3Q53F19 620 aaKnown RBP18.73■□□□□ 0.59
NIPBL-206ENST00000509429 NPM3O75607 178 aaKnown RBP18.41■□□□□ 0.54
NIPBL-206ENST00000509429 ABCB7O75027 752 aa18.3■□□□□ 0.52
NIPBL-206ENST00000509429 TRHP20396 242 aaPredicted RBP18.28■□□□□ 0.52
NIPBL-206ENST00000509429 CHRDL2Q6WN34 429 aa18.24■□□□□ 0.51
NIPBL-206ENST00000509429 ZNF219Q9P2Y4 722 aaPredicted RBP18.23■□□□□ 0.51
NIPBL-206ENST00000509429 RBM42Q9BTD8 480 aaKnown RBP18.21■□□□□ 0.51
NIPBL-206ENST00000509429 SP7Q8TDD2 431 aaPredicted RBP18.19■□□□□ 0.5
NIPBL-206ENST00000509429 APLP2Q06481 763 aa18.18■□□□□ 0.5
NIPBL-206ENST00000509429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.89■□□□□ 0.45
NIPBL-206ENST00000509429 HNRNPUL2Q1KMD3 747 aaKnown RBP17.89■□□□□ 0.45
NIPBL-206ENST00000509429 SLC4A2P04920 1241 aa17.87■□□□□ 0.45
NIPBL-206ENST00000509429 SAMD1Q6SPF0 538 aaPredicted RBP17.72■□□□□ 0.43
NIPBL-206ENST00000509429 HAX1O00165 279 aa17.56■□□□□ 0.4
NIPBL-206ENST00000509429 POLA2Q14181 598 aa17.55■□□□□ 0.4
NIPBL-206ENST00000509429 PIP4P2Q8N4L2 257 aa17.55■□□□□ 0.4
NIPBL-206ENST00000509429 AKT1S1Q96B36 256 aa17.54■□□□□ 0.4
NIPBL-206ENST00000509429 REM2Q8IYK8 340 aaPredicted RBP17.36■□□□□ 0.37
NIPBL-206ENST00000509429 FXR2P51116 673 aaKnown RBP eCLIP17.28■□□□□ 0.363e-6■□□□□ 11.2
NIPBL-206ENST00000509429 EVX2Q03828 476 aa17.22■□□□□ 0.35
NIPBL-206ENST00000509429 PITPNM1O00562 1244 aa17.18■□□□□ 0.34
NIPBL-206ENST00000509429 ZBTB12Q9Y330 459 aaPredicted RBP17.13■□□□□ 0.33
NIPBL-206ENST00000509429 MYCNP04198 464 aaPredicted RBP17.07■□□□□ 0.32
NIPBL-206ENST00000509429 LHX8Q68G74 356 aa17.05■□□□□ 0.32
NIPBL-206ENST00000509429 KCNA4P22459 653 aa17.03■□□□□ 0.32
NIPBL-206ENST00000509429 OSCARQ8IYS5 282 aa17■□□□□ 0.31
NIPBL-206ENST00000509429 PLSCR2Q9NRY7 297 aa16.9■□□□□ 0.3
NIPBL-206ENST00000509429 GABBR2O75899 941 aa16.8■□□□□ 0.28
NIPBL-206ENST00000509429 C19orf67A6NJJ6 358 aa16.77■□□□□ 0.28
NIPBL-206ENST00000509429 PRKAR2AP13861 404 aaKnown RBP16.74■□□□□ 0.27
NIPBL-206ENST00000509429 ATF5Q9Y2D1 282 aaPredicted RBP16.74■□□□□ 0.27
NIPBL-206ENST00000509429 CLEC11AQ9Y240 323 aa16.5■□□□□ 0.23
NIPBL-206ENST00000509429 SPDYE2BA6NHP3 402 aa16.49■□□□□ 0.23
NIPBL-206ENST00000509429 SPDYE6P0CI01 402 aa16.49■□□□□ 0.23
NIPBL-206ENST00000509429 SPDYE2Q495Y8 402 aa16.49■□□□□ 0.23
NIPBL-206ENST00000509429 SPDYE1Q8NFV5 336 aaPredicted RBP16.48■□□□□ 0.23
NIPBL-206ENST00000509429 POTEIP0CG38 1075 aa16.41■□□□□ 0.22
NIPBL-206ENST00000509429 CHADLQ6NUI6 762 aa16.28■□□□□ 0.2
NIPBL-206ENST00000509429 FOXD4L1Q9NU39 408 aa16.28■□□□□ 0.2
NIPBL-206ENST00000509429 CLCN6P51797 869 aa16.21■□□□□ 0.19
NIPBL-206ENST00000509429 FBLN2P98095 1184 aa16.21■□□□□ 0.19
NIPBL-206ENST00000509429 CD44P16070 742 aaKnown RBP16.14■□□□□ 0.17
NIPBL-206ENST00000509429 DCBLD2Q96PD2 775 aa16.12■□□□□ 0.17
NIPBL-206ENST00000509429 SSUH2Q9Y2M2 353 aa16.12■□□□□ 0.17
NIPBL-206ENST00000509429 ZNF692Q9BU19 519 aaPredicted RBP16.11■□□□□ 0.17
NIPBL-206ENST00000509429 POTEMA6NI47 508 aa16.1■□□□□ 0.17
NIPBL-206ENST00000509429 PRR29P0C7W0 189 aa16.08■□□□□ 0.16
NIPBL-206ENST00000509429 OTUD5Q96G74 571 aa16.03■□□□□ 0.16
NIPBL-206ENST00000509429 POTEGQ6S5H5 508 aa16.01■□□□□ 0.15
NIPBL-206ENST00000509429 PCDH10Q9P2E7 1040 aa15.96■□□□□ 0.15
NIPBL-206ENST00000509429 FARP1Q9Y4F1 1045 aaPredicted RBP15.95■□□□□ 0.14
NIPBL-206ENST00000509429 ATXN8OSP0DMR3 200 aa15.92■□□□□ 0.14
NIPBL-206ENST00000509429 MKRN4PQ13434 485 aaPredicted RBP15.91■□□□□ 0.14
NIPBL-206ENST00000509429 SLC4A1APQ9BWU0 796 aaKnown RBP15.87■□□□□ 0.13
NIPBL-206ENST00000509429 POTEB2H3BUK9 544 aa15.84■□□□□ 0.13
NIPBL-206ENST00000509429 ZNF579Q8NAF0 562 aaKnown RBP15.84■□□□□ 0.13
NIPBL-206ENST00000509429 PABPN1Q86U42 306 aaKnown RBP eCLIP15.81■□□□□ 0.12
NIPBL-206ENST00000509429 ZRANB1Q9UGI0 708 aa15.74■□□□□ 0.11
NIPBL-206ENST00000509429 GALR2O43603 387 aaPredicted RBP15.7■□□□□ 0.1
NIPBL-206ENST00000509429 ZBTB22O15209 634 aa15.62■□□□□ 0.09
NIPBL-206ENST00000509429 PELP1Q8IZL8 1130 aaKnown RBP15.5■□□□□ 0.07
NIPBL-206ENST00000509429 LCE2DQ5TA82 110 aaPredicted RBP15.49■□□□□ 0.07
NIPBL-206ENST00000509429 MAMSTRQ6ZN01 415 aa15.46■□□□□ 0.07
NIPBL-206ENST00000509429 FAM163AQ96GL9 167 aaPredicted RBP15.45■□□□□ 0.06
NIPBL-206ENST00000509429 POTEJP0CG39 1038 aa15.43■□□□□ 0.06
NIPBL-206ENST00000509429 METRNQ9UJH8 293 aa15.41■□□□□ 0.06
NIPBL-206ENST00000509429 PAK3O75914 559 aaPredicted RBP15.39■□□□□ 0.05
NIPBL-206ENST00000509429 PHF12Q96QT6 1004 aa15.39■□□□□ 0.05
NIPBL-206ENST00000509429 CREBZFQ9NS37 354 aa15.39■□□□□ 0.05
NIPBL-206ENST00000509429 C7P10643 843 aa15.37■□□□□ 0.05
NIPBL-206ENST00000509429 SLC39A7Q92504 469 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms