RNA–Protein interactions for RNA: ENST00000509165.1

NFKB1-208, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 5

Gene NFKB1, Length 557 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-208ENST00000509165 AEBP2Q6ZN18 517 aaPredicted RBP26.17■■□□□ 1.78
NFKB1-208ENST00000509165 CHIC1Q5VXU3 224 aa24.36■■□□□ 1.49
NFKB1-208ENST00000509165 SENP3Q9H4L4 574 aaPredicted RBP22.34■■□□□ 1.17
NFKB1-208ENST00000509165 PHF23Q9BUL5 403 aaPredicted RBP22.01■■□□□ 1.11
NFKB1-208ENST00000509165 FOXD1Q16676 465 aa20.98■□□□□ 0.95
NFKB1-208ENST00000509165 POTEDQ86YR6 584 aa20.64■□□□□ 0.89
NFKB1-208ENST00000509165 MSH5O43196 834 aa19.83■□□□□ 0.77
NFKB1-208ENST00000509165 PIAS4Q8N2W9 510 aaPredicted RBP19.43■□□□□ 0.7
NFKB1-208ENST00000509165 PPP6R1Q9UPN7 881 aa19.12■□□□□ 0.65
NFKB1-208ENST00000509165 ADRA2BP18089 450 aa19.02■□□□□ 0.64
NFKB1-208ENST00000509165 PLPPR3Q6T4P5 718 aa18.94■□□□□ 0.62
NFKB1-208ENST00000509165 MAPK8IP2Q13387 824 aaPredicted RBP17.7■□□□□ 0.42
NFKB1-208ENST00000509165 DMRT2Q9Y5R5 561 aa17.62■□□□□ 0.41
NFKB1-208ENST00000509165 CACNB1Q02641 598 aaPredicted RBP17.52■□□□□ 0.4
NFKB1-208ENST00000509165 SCAF1Q9H7N4 1312 aaKnown RBP17.28■□□□□ 0.36
NFKB1-208ENST00000509165 DCAF8L1A6NGE4 600 aa17.03■□□□□ 0.32
NFKB1-208ENST00000509165 RNF39Q9H2S5 420 aa16.88■□□□□ 0.29
NFKB1-208ENST00000509165 PPP4R3CPQ6ZMV5 832 aa16.69■□□□□ 0.26
NFKB1-208ENST00000509165 HOXD11P31277 338 aaPredicted RBP16.68■□□□□ 0.26
NFKB1-208ENST00000509165 C1QBPQ07021 282 aaKnown RBP16.57■□□□□ 0.24
NFKB1-208ENST00000509165 RNF216Q9NWF9 866 aaPredicted RBP16.36■□□□□ 0.21
NFKB1-208ENST00000509165 CNKSR2Q8WXI2 1034 aa16.34■□□□□ 0.21
NFKB1-208ENST00000509165 KCNA4P22459 653 aa16.21■□□□□ 0.19
NFKB1-208ENST00000509165 NCBP3Q53F19 620 aaKnown RBP16.17■□□□□ 0.18
NFKB1-208ENST00000509165 DNAJC5BQ9UF47 199 aa16.15■□□□□ 0.18
NFKB1-208ENST00000509165 POTEHQ6S545 545 aa16.03■□□□□ 0.16
NFKB1-208ENST00000509165 NPM3O75607 178 aaKnown RBP16.01■□□□□ 0.15
NFKB1-208ENST00000509165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.95■□□□□ 0.14
NFKB1-208ENST00000509165 DSG3P32926 999 aa15.6■□□□□ 0.09
NFKB1-208ENST00000509165 SPINK5Q9NQ38 1064 aaPredicted RBP15.56■□□□□ 0.08
NFKB1-208ENST00000509165 CAPN15O75808 1086 aa15.55■□□□□ 0.08
NFKB1-208ENST00000509165 U3KPZ7 1027 aaPredicted RBP15.53■□□□□ 0.08
NFKB1-208ENST00000509165 SLC4A1APQ9BWU0 796 aaKnown RBP15.37■□□□□ 0.05
NFKB1-208ENST00000509165 SLC4A2P04920 1241 aa15.18■□□□□ 0.02
NFKB1-208ENST00000509165 ABCB7O75027 752 aa15.16■□□□□ 0.02
NFKB1-208ENST00000509165 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
NFKB1-208ENST00000509165 ZNF219Q9P2Y4 722 aaPredicted RBP14.99□□□□□ -0.01
NFKB1-208ENST00000509165 ZBTB22O15209 634 aa14.95□□□□□ -0.02
NFKB1-208ENST00000509165 FOXD4L1Q9NU39 408 aa14.92□□□□□ -0.02
NFKB1-208ENST00000509165 APLP2Q06481 763 aa14.91□□□□□ -0.02
NFKB1-208ENST00000509165 CHRDL2Q6WN34 429 aa14.85□□□□□ -0.03
NFKB1-208ENST00000509165 RBM42Q9BTD8 480 aaKnown RBP14.83□□□□□ -0.04
NFKB1-208ENST00000509165 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
NFKB1-208ENST00000509165 MYCNP04198 464 aaPredicted RBP14.76□□□□□ -0.05
NFKB1-208ENST00000509165 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
NFKB1-208ENST00000509165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
NFKB1-208ENST00000509165 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
NFKB1-208ENST00000509165 SP7Q8TDD2 431 aaPredicted RBP14.68□□□□□ -0.06
NFKB1-208ENST00000509165 SAMD1Q6SPF0 538 aaPredicted RBP14.65□□□□□ -0.06
NFKB1-208ENST00000509165 POLA2Q14181 598 aa14.56□□□□□ -0.08
NFKB1-208ENST00000509165 ATF5Q9Y2D1 282 aaPredicted RBP14.43□□□□□ -0.1
NFKB1-208ENST00000509165 ATXN8OSP0DMR3 200 aa14.41□□□□□ -0.1
NFKB1-208ENST00000509165 PIP4P2Q8N4L2 257 aa14.36□□□□□ -0.11
NFKB1-208ENST00000509165 AKT1S1Q96B36 256 aa14.36□□□□□ -0.11
NFKB1-208ENST00000509165 HAX1O00165 279 aa14.32□□□□□ -0.12
NFKB1-208ENST00000509165 REM2Q8IYK8 340 aaPredicted RBP14.27□□□□□ -0.13
NFKB1-208ENST00000509165 PITPNM1O00562 1244 aa14.14□□□□□ -0.15
NFKB1-208ENST00000509165 FXR2P51116 673 aaKnown RBP eCLIP14.13□□□□□ -0.15
NFKB1-208ENST00000509165 EVX2Q03828 476 aa14.13□□□□□ -0.15
NFKB1-208ENST00000509165 OSCARQ8IYS5 282 aa14.12□□□□□ -0.15
NFKB1-208ENST00000509165 ZBTB12Q9Y330 459 aaPredicted RBP14.09□□□□□ -0.15
NFKB1-208ENST00000509165 MKRN4PQ13434 485 aaPredicted RBP13.81□□□□□ -0.2
NFKB1-208ENST00000509165 PRKAR2AP13861 404 aaKnown RBP13.78□□□□□ -0.2
NFKB1-208ENST00000509165 LHX8Q68G74 356 aa13.77□□□□□ -0.21
NFKB1-208ENST00000509165 FBLN2P98095 1184 aa13.73□□□□□ -0.21
NFKB1-208ENST00000509165 C19orf67A6NJJ6 358 aa13.71□□□□□ -0.21
NFKB1-208ENST00000509165 GABBR2O75899 941 aa13.71□□□□□ -0.21
NFKB1-208ENST00000509165 CLEC11AQ9Y240 323 aa13.69□□□□□ -0.22
NFKB1-208ENST00000509165 SPDYE2BA6NHP3 402 aa13.63□□□□□ -0.23
NFKB1-208ENST00000509165 SPDYE6P0CI01 402 aa13.63□□□□□ -0.23
NFKB1-208ENST00000509165 SPDYE2Q495Y8 402 aa13.63□□□□□ -0.23
NFKB1-208ENST00000509165 SPDYE1Q8NFV5 336 aaPredicted RBP13.58□□□□□ -0.24
NFKB1-208ENST00000509165 PLSCR2Q9NRY7 297 aa13.55□□□□□ -0.24
NFKB1-208ENST00000509165 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
NFKB1-208ENST00000509165 POTEIP0CG38 1075 aa13.44□□□□□ -0.26
NFKB1-208ENST00000509165 ZNF692Q9BU19 519 aaPredicted RBP13.42□□□□□ -0.26
NFKB1-208ENST00000509165 SSUH2Q9Y2M2 353 aa13.42□□□□□ -0.26
NFKB1-208ENST00000509165 SPDYE4A6NLX3 237 aa13.37□□□□□ -0.27
NFKB1-208ENST00000509165 PRR29P0C7W0 189 aa13.32□□□□□ -0.28
NFKB1-208ENST00000509165 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
NFKB1-208ENST00000509165 FKBP8Q14318 412 aa13.29□□□□□ -0.28
NFKB1-208ENST00000509165 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
NFKB1-208ENST00000509165 PROM2Q8N271 834 aa13.23□□□□□ -0.29
NFKB1-208ENST00000509165 DCBLD2Q96PD2 775 aa13.19□□□□□ -0.3
NFKB1-208ENST00000509165 FARP1Q9Y4F1 1045 aaPredicted RBP13.18□□□□□ -0.3
NFKB1-208ENST00000509165 CLCN6P51797 869 aa13.12□□□□□ -0.31
NFKB1-208ENST00000509165 OTUD5Q96G74 571 aa13.06□□□□□ -0.32
NFKB1-208ENST00000509165 POTEMA6NI47 508 aa13.02□□□□□ -0.33
NFKB1-208ENST00000509165 ZRANB1Q9UGI0 708 aa13.01□□□□□ -0.33
NFKB1-208ENST00000509165 POTEB2H3BUK9 544 aa13□□□□□ -0.33
NFKB1-208ENST00000509165 ZNF579Q8NAF0 562 aaKnown RBP13□□□□□ -0.33
NFKB1-208ENST00000509165 GALR2O43603 387 aaPredicted RBP12.97□□□□□ -0.33
NFKB1-208ENST00000509165 STAG3Q9UJ98 1225 aa12.97□□□□□ -0.33
NFKB1-208ENST00000509165 POTEGQ6S5H5 508 aa12.96□□□□□ -0.33
NFKB1-208ENST00000509165 CREBZFQ9NS37 354 aa12.82□□□□□ -0.36
NFKB1-208ENST00000509165 FBXO3Q9UK99 471 aa12.81□□□□□ -0.36
NFKB1-208ENST00000509165 PELP1Q8IZL8 1130 aaKnown RBP12.79□□□□□ -0.36
NFKB1-208ENST00000509165 PHF12Q96QT6 1004 aa12.78□□□□□ -0.36
NFKB1-208ENST00000509165 PCDH10Q9P2E7 1040 aa12.74□□□□□ -0.37
NFKB1-208ENST00000509165 PAK3O75914 559 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms