RNA–Protein interactions for RNA: ENST00000506779.1

TOPBP1-205, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 536 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-205ENST00000506779 AEBP2Q6ZN18 517 aaPredicted RBP25.32■■□□□ 1.64
TOPBP1-205ENST00000506779 CHIC1Q5VXU3 224 aa23.62■■□□□ 1.37
TOPBP1-205ENST00000506779 SENP3Q9H4L4 574 aaPredicted RBP21.73■■□□□ 1.07
TOPBP1-205ENST00000506779 PHF23Q9BUL5 403 aaPredicted RBP21.33■■□□□ 1.01
TOPBP1-205ENST00000506779 POTEDQ86YR6 584 aa20.63■□□□□ 0.89
TOPBP1-205ENST00000506779 FOXD1Q16676 465 aa20.39■□□□□ 0.85
TOPBP1-205ENST00000506779 MSH5O43196 834 aa19.43■□□□□ 0.7
TOPBP1-205ENST00000506779 PIAS4Q8N2W9 510 aaPredicted RBP18.8■□□□□ 0.6
TOPBP1-205ENST00000506779 PPP6R1Q9UPN7 881 aa18.34■□□□□ 0.53
TOPBP1-205ENST00000506779 ADRA2BP18089 450 aa18.22■□□□□ 0.51
TOPBP1-205ENST00000506779 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
TOPBP1-205ENST00000506779 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
TOPBP1-205ENST00000506779 DMRT2Q9Y5R5 561 aa17.08■□□□□ 0.32
TOPBP1-205ENST00000506779 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
TOPBP1-205ENST00000506779 SCAF1Q9H7N4 1312 aaKnown RBP16.64■□□□□ 0.25
TOPBP1-205ENST00000506779 RNF39Q9H2S5 420 aa16.5■□□□□ 0.23
TOPBP1-205ENST00000506779 DCAF8L1A6NGE4 600 aa16.45■□□□□ 0.22
TOPBP1-205ENST00000506779 C1QBPQ07021 282 aaKnown RBP16.2■□□□□ 0.18
TOPBP1-205ENST00000506779 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
TOPBP1-205ENST00000506779 POTEHQ6S545 545 aa15.98■□□□□ 0.15
TOPBP1-205ENST00000506779 DNAJC5BQ9UF47 199 aa15.7■□□□□ 0.1
TOPBP1-205ENST00000506779 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
TOPBP1-205ENST00000506779 PPP4R3CPQ6ZMV5 832 aa15.66■□□□□ 0.1
TOPBP1-205ENST00000506779 CNKSR2Q8WXI2 1034 aa15.58■□□□□ 0.08
TOPBP1-205ENST00000506779 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.33■□□□□ 0.04
TOPBP1-205ENST00000506779 DSG3P32926 999 aa15.13■□□□□ 0.01
TOPBP1-205ENST00000506779 CAPN15O75808 1086 aa14.99□□□□□ -0.01
TOPBP1-205ENST00000506779 SPINK5Q9NQ38 1064 aaPredicted RBP14.98□□□□□ -0.01
TOPBP1-205ENST00000506779 U3KPZ7 1027 aaPredicted RBP14.88□□□□□ -0.03
TOPBP1-205ENST00000506779 NCBP3Q53F19 620 aaKnown RBP14.76□□□□□ -0.05
TOPBP1-205ENST00000506779 ABCB7O75027 752 aa14.56□□□□□ -0.08
TOPBP1-205ENST00000506779 NPM3O75607 178 aaKnown RBP14.55□□□□□ -0.08
TOPBP1-205ENST00000506779 CHRDL2Q6WN34 429 aa14.53□□□□□ -0.08
TOPBP1-205ENST00000506779 TRHP20396 242 aaPredicted RBP14.52□□□□□ -0.09
TOPBP1-205ENST00000506779 SP7Q8TDD2 431 aaPredicted RBP14.51□□□□□ -0.09
TOPBP1-205ENST00000506779 RBM42Q9BTD8 480 aaKnown RBP14.44□□□□□ -0.1
TOPBP1-205ENST00000506779 ZNF219Q9P2Y4 722 aaPredicted RBP14.43□□□□□ -0.1
TOPBP1-205ENST00000506779 APLP2Q06481 763 aa14.34□□□□□ -0.11
TOPBP1-205ENST00000506779 SLC4A2P04920 1241 aa14.17□□□□□ -0.14
TOPBP1-205ENST00000506779 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.11□□□□□ -0.15
TOPBP1-205ENST00000506779 HNRNPUL2Q1KMD3 747 aaKnown RBP14.11□□□□□ -0.15
TOPBP1-205ENST00000506779 HAX1O00165 279 aa13.99□□□□□ -0.17
TOPBP1-205ENST00000506779 SAMD1Q6SPF0 538 aaPredicted RBP13.99□□□□□ -0.17
TOPBP1-205ENST00000506779 PIP4P2Q8N4L2 257 aa13.98□□□□□ -0.17
TOPBP1-205ENST00000506779 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
TOPBP1-205ENST00000506779 POLA2Q14181 598 aa13.91□□□□□ -0.18
TOPBP1-205ENST00000506779 REM2Q8IYK8 340 aaPredicted RBP13.8□□□□□ -0.2
TOPBP1-205ENST00000506779 EVX2Q03828 476 aa13.77□□□□□ -0.21
TOPBP1-205ENST00000506779 FXR2P51116 673 aaKnown RBP eCLIP13.74□□□□□ -0.21
TOPBP1-205ENST00000506779 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
TOPBP1-205ENST00000506779 LHX8Q68G74 356 aa13.61□□□□□ -0.23
TOPBP1-205ENST00000506779 PLSCR2Q9NRY7 297 aa13.56□□□□□ -0.24
TOPBP1-205ENST00000506779 ZBTB12Q9Y330 459 aaPredicted RBP13.52□□□□□ -0.25
TOPBP1-205ENST00000506779 OSCARQ8IYS5 282 aa13.5□□□□□ -0.25
TOPBP1-205ENST00000506779 MYCNP04198 464 aaPredicted RBP13.46□□□□□ -0.25
TOPBP1-205ENST00000506779 KCNA4P22459 653 aa13.42□□□□□ -0.26
TOPBP1-205ENST00000506779 GABBR2O75899 941 aa13.38□□□□□ -0.27
TOPBP1-205ENST00000506779 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
TOPBP1-205ENST00000506779 PRKAR2AP13861 404 aaKnown RBP13.3□□□□□ -0.28
TOPBP1-205ENST00000506779 ATF5Q9Y2D1 282 aaPredicted RBP13.27□□□□□ -0.29
TOPBP1-205ENST00000506779 POTEIP0CG38 1075 aa13.1□□□□□ -0.31
TOPBP1-205ENST00000506779 CLEC11AQ9Y240 323 aa13.09□□□□□ -0.31
TOPBP1-205ENST00000506779 SPDYE1Q8NFV5 336 aaPredicted RBP13.05□□□□□ -0.32
TOPBP1-205ENST00000506779 SPDYE2BA6NHP3 402 aa13.04□□□□□ -0.32
TOPBP1-205ENST00000506779 SPDYE6P0CI01 402 aa13.04□□□□□ -0.32
TOPBP1-205ENST00000506779 SPDYE2Q495Y8 402 aa13.04□□□□□ -0.32
TOPBP1-205ENST00000506779 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
TOPBP1-205ENST00000506779 POTEMA6NI47 508 aa12.86□□□□□ -0.35
TOPBP1-205ENST00000506779 CD44P16070 742 aaKnown RBP12.81□□□□□ -0.36
TOPBP1-205ENST00000506779 CLCN6P51797 869 aa12.81□□□□□ -0.36
TOPBP1-205ENST00000506779 DCBLD2Q96PD2 775 aa12.81□□□□□ -0.36
TOPBP1-205ENST00000506779 FOXD4L1Q9NU39 408 aa12.81□□□□□ -0.36
TOPBP1-205ENST00000506779 OTUD5Q96G74 571 aa12.8□□□□□ -0.36
TOPBP1-205ENST00000506779 FBLN2P98095 1184 aa12.79□□□□□ -0.36
TOPBP1-205ENST00000506779 POTEGQ6S5H5 508 aa12.79□□□□□ -0.36
TOPBP1-205ENST00000506779 SSUH2Q9Y2M2 353 aa12.76□□□□□ -0.37
TOPBP1-205ENST00000506779 ZNF692Q9BU19 519 aaPredicted RBP12.74□□□□□ -0.37
TOPBP1-205ENST00000506779 PRR29P0C7W0 189 aa12.73□□□□□ -0.37
TOPBP1-205ENST00000506779 PCDH10Q9P2E7 1040 aa12.7□□□□□ -0.38
TOPBP1-205ENST00000506779 FARP1Q9Y4F1 1045 aaPredicted RBP12.66□□□□□ -0.38
TOPBP1-205ENST00000506779 POTEB2H3BUK9 544 aa12.65□□□□□ -0.38
TOPBP1-205ENST00000506779 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
TOPBP1-205ENST00000506779 ZNF579Q8NAF0 562 aaKnown RBP12.57□□□□□ -0.4
TOPBP1-205ENST00000506779 PABPN1Q86U42 306 aaKnown RBP eCLIP12.52□□□□□ -0.41
TOPBP1-205ENST00000506779 ATXN8OSP0DMR3 200 aa12.51□□□□□ -0.41
TOPBP1-205ENST00000506779 GALR2O43603 387 aaPredicted RBP12.5□□□□□ -0.41
TOPBP1-205ENST00000506779 ZRANB1Q9UGI0 708 aa12.49□□□□□ -0.41
TOPBP1-205ENST00000506779 SLC4A1APQ9BWU0 796 aaKnown RBP12.47□□□□□ -0.41
TOPBP1-205ENST00000506779 LCE2DQ5TA82 110 aaPredicted RBP12.39□□□□□ -0.43
TOPBP1-205ENST00000506779 PELP1Q8IZL8 1130 aaKnown RBP12.36□□□□□ -0.43
TOPBP1-205ENST00000506779 ZBTB22O15209 634 aa12.33□□□□□ -0.44
TOPBP1-205ENST00000506779 FAM163AQ96GL9 167 aaPredicted RBP12.32□□□□□ -0.44
TOPBP1-205ENST00000506779 POTEJP0CG39 1038 aa12.31□□□□□ -0.44
TOPBP1-205ENST00000506779 MAMSTRQ6ZN01 415 aa12.26□□□□□ -0.45
TOPBP1-205ENST00000506779 METRNQ9UJH8 293 aa12.25□□□□□ -0.45
TOPBP1-205ENST00000506779 PHF12Q96QT6 1004 aa12.24□□□□□ -0.45
TOPBP1-205ENST00000506779 CREBZFQ9NS37 354 aa12.2□□□□□ -0.46
TOPBP1-205ENST00000506779 C7P10643 843 aa12.19□□□□□ -0.46
TOPBP1-205ENST00000506779 SLC39A7Q92504 469 aa12.18□□□□□ -0.46
TOPBP1-205ENST00000506779 ASTLQ6HA08 431 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms