RNA–Protein interactions for RNA: ENST00000505149.1

LINC01088-202, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 3

Gene LINC01088, Length 624 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-202ENST00000505149 AEBP2Q6ZN18 517 aaPredicted RBP21.34■■□□□ 1.01
LINC01088-202ENST00000505149 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
LINC01088-202ENST00000505149 PHF23Q9BUL5 403 aaPredicted RBP18.25■□□□□ 0.51
LINC01088-202ENST00000505149 SENP3Q9H4L4 574 aaPredicted RBP18.18■□□□□ 0.5
LINC01088-202ENST00000505149 POTEDQ86YR6 584 aa17.71■□□□□ 0.43
LINC01088-202ENST00000505149 PLPPR3Q6T4P5 718 aa16.86■□□□□ 0.29
LINC01088-202ENST00000505149 FOXD1Q16676 465 aa16.83■□□□□ 0.28
LINC01088-202ENST00000505149 PPP6R1Q9UPN7 881 aa16.1■□□□□ 0.17
LINC01088-202ENST00000505149 ADRA2BP18089 450 aa16.05■□□□□ 0.16
LINC01088-202ENST00000505149 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
LINC01088-202ENST00000505149 MSH5O43196 834 aa15.62■□□□□ 0.09
LINC01088-202ENST00000505149 PPP4R3CPQ6ZMV5 832 aa14.8□□□□□ -0.04
LINC01088-202ENST00000505149 SCAF1Q9H7N4 1312 aaKnown RBP14.78□□□□□ -0.04
LINC01088-202ENST00000505149 MAPK8IP2Q13387 824 aaPredicted RBP14.57□□□□□ -0.08
LINC01088-202ENST00000505149 DMRT2Q9Y5R5 561 aa14.5□□□□□ -0.09
LINC01088-202ENST00000505149 CNKSR2Q8WXI2 1034 aa14.45□□□□□ -0.1
LINC01088-202ENST00000505149 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
LINC01088-202ENST00000505149 KCNA4P22459 653 aa14.32□□□□□ -0.12
LINC01088-202ENST00000505149 RNF216Q9NWF9 866 aaPredicted RBP14.21□□□□□ -0.13
LINC01088-202ENST00000505149 HOXD11P31277 338 aaPredicted RBP14.2□□□□□ -0.14
LINC01088-202ENST00000505149 NPM3O75607 178 aaKnown RBP14.18□□□□□ -0.14
LINC01088-202ENST00000505149 CACNB1Q02641 598 aaPredicted RBP14.17□□□□□ -0.14
LINC01088-202ENST00000505149 DNAJC5BQ9UF47 199 aa14□□□□□ -0.17
LINC01088-202ENST00000505149 DCAF8L1A6NGE4 600 aa13.7□□□□□ -0.22
LINC01088-202ENST00000505149 SLC4A1APQ9BWU0 796 aaKnown RBP13.63□□□□□ -0.23
LINC01088-202ENST00000505149 POTEHQ6S545 545 aa13.54□□□□□ -0.24
LINC01088-202ENST00000505149 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
LINC01088-202ENST00000505149 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.41□□□□□ -0.26
LINC01088-202ENST00000505149 RNF39Q9H2S5 420 aa13.37□□□□□ -0.27
LINC01088-202ENST00000505149 FOXD4L1Q9NU39 408 aa13.26□□□□□ -0.29
LINC01088-202ENST00000505149 C1QBPQ07021 282 aaKnown RBP13.22□□□□□ -0.29
LINC01088-202ENST00000505149 U3KPZ7 1027 aaPredicted RBP13.22□□□□□ -0.29
LINC01088-202ENST00000505149 ZBTB22O15209 634 aa13.18□□□□□ -0.3
LINC01088-202ENST00000505149 MYCNP04198 464 aaPredicted RBP13.14□□□□□ -0.31
LINC01088-202ENST00000505149 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.1□□□□□ -0.31
LINC01088-202ENST00000505149 HNRNPUL2Q1KMD3 747 aaKnown RBP13.1□□□□□ -0.31
LINC01088-202ENST00000505149 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
LINC01088-202ENST00000505149 SAMD1Q6SPF0 538 aaPredicted RBP13.03□□□□□ -0.32
LINC01088-202ENST00000505149 EHMT2Q96KQ7 1210 aa13.03□□□□□ -0.32
LINC01088-202ENST00000505149 APLP2Q06481 763 aa12.98□□□□□ -0.33
LINC01088-202ENST00000505149 ATXN8OSP0DMR3 200 aa12.89□□□□□ -0.35
LINC01088-202ENST00000505149 SPINK5Q9NQ38 1064 aaPredicted RBP12.83□□□□□ -0.36
LINC01088-202ENST00000505149 ZNF219Q9P2Y4 722 aaPredicted RBP12.78□□□□□ -0.36
LINC01088-202ENST00000505149 CAPN15O75808 1086 aa12.77□□□□□ -0.37
LINC01088-202ENST00000505149 ATF5Q9Y2D1 282 aaPredicted RBP12.72□□□□□ -0.37
LINC01088-202ENST00000505149 TRHP20396 242 aaPredicted RBP12.67□□□□□ -0.38
LINC01088-202ENST00000505149 DSG3P32926 999 aa12.66□□□□□ -0.38
LINC01088-202ENST00000505149 POLA2Q14181 598 aa12.5□□□□□ -0.41
LINC01088-202ENST00000505149 ABCB7O75027 752 aa12.49□□□□□ -0.41
LINC01088-202ENST00000505149 ZBTB12Q9Y330 459 aaPredicted RBP12.38□□□□□ -0.43
LINC01088-202ENST00000505149 FBLN2P98095 1184 aa12.23□□□□□ -0.45
LINC01088-202ENST00000505149 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
LINC01088-202ENST00000505149 RBM42Q9BTD8 480 aaKnown RBP12.1□□□□□ -0.47
LINC01088-202ENST00000505149 OSCARQ8IYS5 282 aa12.06□□□□□ -0.48
LINC01088-202ENST00000505149 SPDYE2BA6NHP3 402 aa12.02□□□□□ -0.49
LINC01088-202ENST00000505149 SPDYE6P0CI01 402 aa12.02□□□□□ -0.49
LINC01088-202ENST00000505149 SPDYE2Q495Y8 402 aa12.02□□□□□ -0.49
LINC01088-202ENST00000505149 SP7Q8TDD2 431 aaPredicted RBP11.97□□□□□ -0.49
LINC01088-202ENST00000505149 AKT1S1Q96B36 256 aa11.93□□□□□ -0.5
LINC01088-202ENST00000505149 SSUH2Q9Y2M2 353 aa11.93□□□□□ -0.5
LINC01088-202ENST00000505149 ZNF692Q9BU19 519 aaPredicted RBP11.89□□□□□ -0.51
LINC01088-202ENST00000505149 SPDYE4A6NLX3 237 aa11.86□□□□□ -0.51
LINC01088-202ENST00000505149 PROM2Q8N271 834 aa11.78□□□□□ -0.52
LINC01088-202ENST00000505149 REM2Q8IYK8 340 aaPredicted RBP11.77□□□□□ -0.53
LINC01088-202ENST00000505149 PLSCR2Q9NRY7 297 aa11.76□□□□□ -0.53
LINC01088-202ENST00000505149 FKBP8Q14318 412 aa11.74□□□□□ -0.53
LINC01088-202ENST00000505149 PABPN1Q86U42 306 aaKnown RBP eCLIP11.72□□□□□ -0.53
LINC01088-202ENST00000505149 SPDYE1Q8NFV5 336 aaPredicted RBP11.66□□□□□ -0.54
LINC01088-202ENST00000505149 PITPNM1O00562 1244 aa11.63□□□□□ -0.55
LINC01088-202ENST00000505149 STAG3Q9UJ98 1225 aa11.59□□□□□ -0.55
LINC01088-202ENST00000505149 CHRDL2Q6WN34 429 aa11.58□□□□□ -0.56
LINC01088-202ENST00000505149 CLEC11AQ9Y240 323 aa11.51□□□□□ -0.57
LINC01088-202ENST00000505149 FXR2P51116 673 aaKnown RBP eCLIP11.48□□□□□ -0.57
LINC01088-202ENST00000505149 PRR29P0C7W0 189 aa11.45□□□□□ -0.58
LINC01088-202ENST00000505149 FBXO3Q9UK99 471 aa11.45□□□□□ -0.58
LINC01088-202ENST00000505149 PIP4P2Q8N4L2 257 aa11.41□□□□□ -0.58
LINC01088-202ENST00000505149 PRKAR2AP13861 404 aaKnown RBP11.31□□□□□ -0.6
LINC01088-202ENST00000505149 CREBZFQ9NS37 354 aa11.31□□□□□ -0.6
LINC01088-202ENST00000505149 VASPP50552 380 aaPredicted RBP11.26□□□□□ -0.61
LINC01088-202ENST00000505149 CHADLQ6NUI6 762 aa11.24□□□□□ -0.61
LINC01088-202ENST00000505149 MNX1P50219 401 aaPredicted RBP11.23□□□□□ -0.61
LINC01088-202ENST00000505149 PLEKHG5O94827 1062 aa11.22□□□□□ -0.61
LINC01088-202ENST00000505149 LHX8Q68G74 356 aa11.22□□□□□ -0.61
LINC01088-202ENST00000505149 MIER1Q8N108 512 aa11.22□□□□□ -0.61
LINC01088-202ENST00000505149 FARP1Q9Y4F1 1045 aaPredicted RBP11.21□□□□□ -0.61
LINC01088-202ENST00000505149 PLCD3Q8N3E9 789 aa11.19□□□□□ -0.62
LINC01088-202ENST00000505149 HAX1O00165 279 aa11.18□□□□□ -0.62
LINC01088-202ENST00000505149 ZBTB47Q9UFB7 747 aaPredicted RBP11.18□□□□□ -0.62
LINC01088-202ENST00000505149 NPM1P06748 294 aaKnown RBP eCLIP11.14□□□□□ -0.63
LINC01088-202ENST00000505149 EVX2Q03828 476 aa11.13□□□□□ -0.63
LINC01088-202ENST00000505149 C19orf67A6NJJ6 358 aa11.09□□□□□ -0.63
LINC01088-202ENST00000505149 IFNLR1Q8IU57 520 aaPredicted RBP11.09□□□□□ -0.63
LINC01088-202ENST00000505149 NUBP1P53384 320 aa11.02□□□□□ -0.65
LINC01088-202ENST00000505149 KLHL34Q8N239 644 aa11□□□□□ -0.65
LINC01088-202ENST00000505149 CD44P16070 742 aaKnown RBP10.99□□□□□ -0.65
LINC01088-202ENST00000505149 SPOCK2Q92563 424 aa10.98□□□□□ -0.65
LINC01088-202ENST00000505149 RASEFQ8IZ41 740 aa10.95□□□□□ -0.66
LINC01088-202ENST00000505149 PAK3O75914 559 aaPredicted RBP10.94□□□□□ -0.66
LINC01088-202ENST00000505149 CLCN6P51797 869 aa10.91□□□□□ -0.66
LINC01088-202ENST00000505149 ZNF579Q8NAF0 562 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms