RNA–Protein interactions for RNA: ENST00000502991.5

RFC1-205, Transcript of replication factor C subunit 1, humanhuman

TSL 4

Gene RFC1, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-205ENST00000502991 AEBP2Q6ZN18 517 aaPredicted RBP23.89■■□□□ 1.41
RFC1-205ENST00000502991 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
RFC1-205ENST00000502991 PHF23Q9BUL5 403 aaPredicted RBP20.36■□□□□ 0.85
RFC1-205ENST00000502991 SENP3Q9H4L4 574 aaPredicted RBP20.18■□□□□ 0.82
RFC1-205ENST00000502991 FOXD1Q16676 465 aa18.83■□□□□ 0.6
RFC1-205ENST00000502991 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
RFC1-205ENST00000502991 PPP6R1Q9UPN7 881 aa18.05■□□□□ 0.48
RFC1-205ENST00000502991 ADRA2BP18089 450 aa18.03■□□□□ 0.48
RFC1-205ENST00000502991 PIAS4Q8N2W9 510 aaPredicted RBP17.71■□□□□ 0.43
RFC1-205ENST00000502991 MSH5O43196 834 aa17.32■□□□□ 0.36
RFC1-205ENST00000502991 POTEDQ86YR6 584 aa17.21■□□□□ 0.35
RFC1-205ENST00000502991 PPP4R3CPQ6ZMV5 832 aa16.45■□□□□ 0.22
RFC1-205ENST00000502991 MAPK8IP2Q13387 824 aaPredicted RBP16.43■□□□□ 0.22
RFC1-205ENST00000502991 SCAF1Q9H7N4 1312 aaKnown RBP16.31■□□□□ 0.2
RFC1-205ENST00000502991 DMRT2Q9Y5R5 561 aa16.1■□□□□ 0.17
RFC1-205ENST00000502991 CNKSR2Q8WXI2 1034 aa15.97■□□□□ 0.15
RFC1-205ENST00000502991 KCNA4P22459 653 aa15.95■□□□□ 0.14
RFC1-205ENST00000502991 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
RFC1-205ENST00000502991 NPM3O75607 178 aaKnown RBP15.75■□□□□ 0.11
RFC1-205ENST00000502991 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
RFC1-205ENST00000502991 HOXD11P31277 338 aaPredicted RBP15.68■□□□□ 0.1
RFC1-205ENST00000502991 DCAF8L1A6NGE4 600 aa15.51■□□□□ 0.07
RFC1-205ENST00000502991 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
RFC1-205ENST00000502991 SLC4A1APQ9BWU0 796 aaKnown RBP15.1■□□□□ 0.01
RFC1-205ENST00000502991 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15□□□□□ -0.015e-7■■□□□ 11.5
RFC1-205ENST00000502991 SLC4A2P04920 1241 aa14.94□□□□□ -0.02
RFC1-205ENST00000502991 RNF39Q9H2S5 420 aa14.88□□□□□ -0.03
RFC1-205ENST00000502991 U3KPZ7 1027 aaPredicted RBP14.75□□□□□ -0.05
RFC1-205ENST00000502991 ZBTB22O15209 634 aa14.69□□□□□ -0.06
RFC1-205ENST00000502991 CACNB1Q02641 598 aaPredicted RBP14.64□□□□□ -0.07
RFC1-205ENST00000502991 C1QBPQ07021 282 aaKnown RBP14.64□□□□□ -0.07
RFC1-205ENST00000502991 FOXD4L1Q9NU39 408 aa14.64□□□□□ -0.07
RFC1-205ENST00000502991 EHMT2Q96KQ7 1210 aa14.58□□□□□ -0.08
RFC1-205ENST00000502991 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
RFC1-205ENST00000502991 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
RFC1-205ENST00000502991 SPINK5Q9NQ38 1064 aaPredicted RBP14.44□□□□□ -0.1
RFC1-205ENST00000502991 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.37□□□□□ -0.11
RFC1-205ENST00000502991 HNRNPUL2Q1KMD3 747 aaKnown RBP14.37□□□□□ -0.11
RFC1-205ENST00000502991 SAMD1Q6SPF0 538 aaPredicted RBP14.36□□□□□ -0.11
RFC1-205ENST00000502991 CAPN15O75808 1086 aa14.35□□□□□ -0.11
RFC1-205ENST00000502991 TRHP20396 242 aaPredicted RBP14.26□□□□□ -0.13
RFC1-205ENST00000502991 ATF5Q9Y2D1 282 aaPredicted RBP14.25□□□□□ -0.13
RFC1-205ENST00000502991 APLP2Q06481 763 aa14.22□□□□□ -0.13
RFC1-205ENST00000502991 ZNF219Q9P2Y4 722 aaPredicted RBP14.14□□□□□ -0.15
RFC1-205ENST00000502991 DSG3P32926 999 aa14.13□□□□□ -0.15
RFC1-205ENST00000502991 ABCB7O75027 752 aa14.11□□□□□ -0.15
RFC1-205ENST00000502991 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
RFC1-205ENST00000502991 POLA2Q14181 598 aa13.97□□□□□ -0.17
RFC1-205ENST00000502991 MKRN4PQ13434 485 aaPredicted RBP13.6□□□□□ -0.23
RFC1-205ENST00000502991 ZBTB12Q9Y330 459 aaPredicted RBP13.59□□□□□ -0.23
RFC1-205ENST00000502991 FBLN2P98095 1184 aa13.54□□□□□ -0.24
RFC1-205ENST00000502991 OSCARQ8IYS5 282 aa13.53□□□□□ -0.24
RFC1-205ENST00000502991 RBM42Q9BTD8 480 aaKnown RBP13.36□□□□□ -0.27
RFC1-205ENST00000502991 POTEHQ6S545 545 aa13.35□□□□□ -0.27
RFC1-205ENST00000502991 SPDYE2BA6NHP3 402 aa13.26□□□□□ -0.29
RFC1-205ENST00000502991 SPDYE6P0CI01 402 aa13.26□□□□□ -0.29
RFC1-205ENST00000502991 SPDYE2Q495Y8 402 aa13.26□□□□□ -0.29
RFC1-205ENST00000502991 ZNF692Q9BU19 519 aaPredicted RBP13.24□□□□□ -0.29
RFC1-205ENST00000502991 AKT1S1Q96B36 256 aa13.2□□□□□ -0.3
RFC1-205ENST00000502991 SSUH2Q9Y2M2 353 aa13.17□□□□□ -0.3
RFC1-205ENST00000502991 SPDYE4A6NLX3 237 aa13.16□□□□□ -0.3
RFC1-205ENST00000502991 REM2Q8IYK8 340 aaPredicted RBP13.14□□□□□ -0.31
RFC1-205ENST00000502991 PABPN1Q86U42 306 aaKnown RBP eCLIP13.09□□□□□ -0.31
RFC1-205ENST00000502991 FKBP8Q14318 412 aa13.06□□□□□ -0.32
RFC1-205ENST00000502991 PITPNM1O00562 1244 aa13.01□□□□□ -0.33
RFC1-205ENST00000502991 CHRDL2Q6WN34 429 aa12.97□□□□□ -0.33
RFC1-205ENST00000502991 CLEC11AQ9Y240 323 aa12.96□□□□□ -0.33
RFC1-205ENST00000502991 SPDYE1Q8NFV5 336 aaPredicted RBP12.92□□□□□ -0.34
RFC1-205ENST00000502991 PROM2Q8N271 834 aa12.87□□□□□ -0.35
RFC1-205ENST00000502991 PIP4P2Q8N4L2 257 aa12.79□□□□□ -0.36
RFC1-205ENST00000502991 PRR29P0C7W0 189 aa12.77□□□□□ -0.37
RFC1-205ENST00000502991 FXR2P51116 673 aaKnown RBP eCLIP12.75□□□□□ -0.371e-7■■■□□ 17.4
RFC1-205ENST00000502991 STAG3Q9UJ98 1225 aa12.71□□□□□ -0.37
RFC1-205ENST00000502991 CHADLQ6NUI6 762 aa12.7□□□□□ -0.38
RFC1-205ENST00000502991 PRKAR2AP13861 404 aaKnown RBP12.67□□□□□ -0.38
RFC1-205ENST00000502991 CREBZFQ9NS37 354 aa12.6□□□□□ -0.39
RFC1-205ENST00000502991 FBXO3Q9UK99 471 aa12.52□□□□□ -0.41
RFC1-205ENST00000502991 MIER1Q8N108 512 aa12.51□□□□□ -0.41
RFC1-205ENST00000502991 FARP1Q9Y4F1 1045 aaPredicted RBP12.49□□□□□ -0.41
RFC1-205ENST00000502991 PLCD3Q8N3E9 789 aa12.47□□□□□ -0.41
RFC1-205ENST00000502991 MNX1P50219 401 aaPredicted RBP12.44□□□□□ -0.42
RFC1-205ENST00000502991 VASPP50552 380 aaPredicted RBP12.44□□□□□ -0.42
RFC1-205ENST00000502991 HAX1O00165 279 aa12.42□□□□□ -0.42
RFC1-205ENST00000502991 EVX2Q03828 476 aa12.38□□□□□ -0.43
RFC1-205ENST00000502991 PLEKHG5O94827 1062 aa12.36□□□□□ -0.43
RFC1-205ENST00000502991 C19orf67A6NJJ6 358 aa12.32□□□□□ -0.44
RFC1-205ENST00000502991 NPM1P06748 294 aaKnown RBP eCLIP12.3□□□□□ -0.44
RFC1-205ENST00000502991 CD44P16070 742 aaKnown RBP12.29□□□□□ -0.44
RFC1-205ENST00000502991 IFNLR1Q8IU57 520 aaPredicted RBP12.29□□□□□ -0.44
RFC1-205ENST00000502991 KLHL34Q8N239 644 aa12.28□□□□□ -0.44
RFC1-205ENST00000502991 RASEFQ8IZ41 740 aa12.22□□□□□ -0.45
RFC1-205ENST00000502991 TSPYL2Q9H2G4 693 aaPredicted RBP12.22□□□□□ -0.45
RFC1-205ENST00000502991 ZBTB47Q9UFB7 747 aaPredicted RBP12.22□□□□□ -0.45
RFC1-205ENST00000502991 NUBP1P53384 320 aa12.21□□□□□ -0.45
RFC1-205ENST00000502991 ZRANB1Q9UGI0 708 aa12.21□□□□□ -0.45
RFC1-205ENST00000502991 SP7Q8TDD2 431 aaPredicted RBP12.17□□□□□ -0.46
RFC1-205ENST00000502991 PAK3O75914 559 aaPredicted RBP12.14□□□□□ -0.47
RFC1-205ENST00000502991 PHF12Q96QT6 1004 aa12.13□□□□□ -0.47
RFC1-205ENST00000502991 SPOCK2Q92563 424 aa12.12□□□□□ -0.47
RFC1-205ENST00000502991 DCAF8Q5TAQ9 597 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms