RNA–Protein interactions for RNA: ENST00000494402.5

SNX13-210, Transcript of sorting nexin 13, humanhuman

TSL 3

Gene SNX13, Length 453 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-210ENST00000494402 AEBP2Q6ZN18 517 aaPredicted RBP20.62■□□□□ 0.89
SNX13-210ENST00000494402 CHIC1Q5VXU3 224 aa19.86■□□□□ 0.77
SNX13-210ENST00000494402 SENP3Q9H4L4 574 aaPredicted RBP17.71■□□□□ 0.43
SNX13-210ENST00000494402 PHF23Q9BUL5 403 aaPredicted RBP17.46■□□□□ 0.39
SNX13-210ENST00000494402 POTEDQ86YR6 584 aa16.82■□□□□ 0.28
SNX13-210ENST00000494402 FOXD1Q16676 465 aa16.6■□□□□ 0.25
SNX13-210ENST00000494402 PLPPR3Q6T4P5 718 aa16.28■□□□□ 0.2
SNX13-210ENST00000494402 MSH5O43196 834 aa15.84■□□□□ 0.13
SNX13-210ENST00000494402 EHMT2Q96KQ7 1210 aa15.56■□□□□ 0.08
SNX13-210ENST00000494402 SLC24A1O60721 1099 aa15.41■□□□□ 0.06
SNX13-210ENST00000494402 ADRA2BP18089 450 aa15.33■□□□□ 0.04
SNX13-210ENST00000494402 PPP6R1Q9UPN7 881 aa15.32■□□□□ 0.04
SNX13-210ENST00000494402 PIAS4Q8N2W9 510 aaPredicted RBP15.31■□□□□ 0.04
SNX13-210ENST00000494402 KCNA4P22459 653 aa14.86□□□□□ -0.03
SNX13-210ENST00000494402 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
SNX13-210ENST00000494402 AMER1Q5JTC6 1135 aaPredicted RBP14.5□□□□□ -0.09
SNX13-210ENST00000494402 RTN4Q9NQC3 1192 aaKnown RBP14.46□□□□□ -0.09
SNX13-210ENST00000494402 SLC4A1APQ9BWU0 796 aaKnown RBP14.43□□□□□ -0.1
SNX13-210ENST00000494402 PPP4R3CPQ6ZMV5 832 aa14.37□□□□□ -0.11
SNX13-210ENST00000494402 NCBP3Q53F19 620 aaKnown RBP14.11□□□□□ -0.15
SNX13-210ENST00000494402 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
SNX13-210ENST00000494402 CACNB1Q02641 598 aaPredicted RBP14.06□□□□□ -0.16
SNX13-210ENST00000494402 DMRT2Q9Y5R5 561 aa13.92□□□□□ -0.18
SNX13-210ENST00000494402 CNKSR2Q8WXI2 1034 aa13.91□□□□□ -0.18
SNX13-210ENST00000494402 NPM3O75607 178 aaKnown RBP13.85□□□□□ -0.19
SNX13-210ENST00000494402 MAPK8IP2Q13387 824 aaPredicted RBP13.84□□□□□ -0.19
SNX13-210ENST00000494402 ZBTB22O15209 634 aa13.68□□□□□ -0.22
SNX13-210ENST00000494402 RNF216Q9NWF9 866 aaPredicted RBP13.57□□□□□ -0.24
SNX13-210ENST00000494402 RNF39Q9H2S5 420 aa13.46□□□□□ -0.25
SNX13-210ENST00000494402 DNAJC5BQ9UF47 199 aa13.43□□□□□ -0.26
SNX13-210ENST00000494402 HOXD11P31277 338 aaPredicted RBP13.42□□□□□ -0.26
SNX13-210ENST00000494402 DAXXQ9UER7 740 aaPredicted RBP13.37□□□□□ -0.27
SNX13-210ENST00000494402 DCAF8L1A6NGE4 600 aa13.34□□□□□ -0.27
SNX13-210ENST00000494402 PRKCSHP14314 528 aaPredicted RBP13.33□□□□□ -0.28
SNX13-210ENST00000494402 BCANQ96GW7 911 aa13.33□□□□□ -0.28
SNX13-210ENST00000494402 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
SNX13-210ENST00000494402 PLCB2Q00722 1185 aa13.26□□□□□ -0.29
SNX13-210ENST00000494402 FKBP8Q14318 412 aa13.25□□□□□ -0.29
SNX13-210ENST00000494402 TAOK2Q9UL54 1235 aa13.24□□□□□ -0.29
SNX13-210ENST00000494402 C1QBPQ07021 282 aaKnown RBP13.21□□□□□ -0.29
SNX13-210ENST00000494402 HAP1P54257 671 aaPredicted RBP13.09□□□□□ -0.31
SNX13-210ENST00000494402 ARXQ96QS3 562 aa13.07□□□□□ -0.32
SNX13-210ENST00000494402 POTEHQ6S545 545 aa13.02□□□□□ -0.33
SNX13-210ENST00000494402 SLC4A2P04920 1241 aa13□□□□□ -0.33
SNX13-210ENST00000494402 TPRNQ4KMQ1 711 aa13□□□□□ -0.33
SNX13-210ENST00000494402 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
SNX13-210ENST00000494402 TIMELESSQ9UNS1 1208 aa12.91□□□□□ -0.34
SNX13-210ENST00000494402 MYCNP04198 464 aaPredicted RBP12.82□□□□□ -0.36
SNX13-210ENST00000494402 TULP1O00294 542 aaPredicted RBP12.81□□□□□ -0.36
SNX13-210ENST00000494402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.8□□□□□ -0.36
SNX13-210ENST00000494402 ERICH6Q7L0X2 663 aa12.78□□□□□ -0.36
SNX13-210ENST00000494402 ATXN8OSP0DMR3 200 aa12.75□□□□□ -0.37
SNX13-210ENST00000494402 HOMEZQ8IX15 550 aa12.7□□□□□ -0.38
SNX13-210ENST00000494402 DCAF8L2P0C7V8 631 aa12.65□□□□□ -0.38
SNX13-210ENST00000494402 GTF3C3Q9Y5Q9 886 aa12.65□□□□□ -0.38
SNX13-210ENST00000494402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.6□□□□□ -0.39
SNX13-210ENST00000494402 HNRNPUL2Q1KMD3 747 aaKnown RBP12.6□□□□□ -0.39
SNX13-210ENST00000494402 U3KPZ7 1027 aaPredicted RBP12.6□□□□□ -0.39
SNX13-210ENST00000494402 SAMD1Q6SPF0 538 aaPredicted RBP12.56□□□□□ -0.4
SNX13-210ENST00000494402 KDM2AQ9Y2K7 1162 aa12.55□□□□□ -0.4
SNX13-210ENST00000494402 FBXO3Q9UK99 471 aa12.46□□□□□ -0.41
SNX13-210ENST00000494402 RANGAP1P46060 587 aaPredicted RBP12.45□□□□□ -0.42
SNX13-210ENST00000494402 FBLN2P98095 1184 aa12.44□□□□□ -0.42
SNX13-210ENST00000494402 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.44□□□□□ -0.42
SNX13-210ENST00000494402 APLP2Q06481 763 aa12.41□□□□□ -0.42
SNX13-210ENST00000494402 ATF5Q9Y2D1 282 aaPredicted RBP12.41□□□□□ -0.42
SNX13-210ENST00000494402 TMEM132AQ24JP5 1023 aa12.38□□□□□ -0.43
SNX13-210ENST00000494402 BBXQ8WY36 941 aaPredicted RBP12.35□□□□□ -0.43
SNX13-210ENST00000494402 DSG3P32926 999 aa12.32□□□□□ -0.44
SNX13-210ENST00000494402 C14orf37Q86TY3 774 aa12.32□□□□□ -0.44
SNX13-210ENST00000494402 PAXIP1Q6ZW49 1069 aaPredicted RBP12.31□□□□□ -0.44
SNX13-210ENST00000494402 NBR1Q14596 966 aa12.29□□□□□ -0.44
SNX13-210ENST00000494402 CFAP44Q96MT7 982 aa12.27□□□□□ -0.45
SNX13-210ENST00000494402 PKD2Q13563 968 aa12.24□□□□□ -0.45
SNX13-210ENST00000494402 VASPP50552 380 aaPredicted RBP12.22□□□□□ -0.45
SNX13-210ENST00000494402 ZNF219Q9P2Y4 722 aaPredicted RBP12.22□□□□□ -0.45
SNX13-210ENST00000494402 SPINK5Q9NQ38 1064 aaPredicted RBP12.19□□□□□ -0.46
SNX13-210ENST00000494402 PODXL2Q9NZ53 605 aa12.19□□□□□ -0.46
SNX13-210ENST00000494402 CAPN15O75808 1086 aa12.17□□□□□ -0.46
SNX13-210ENST00000494402 TRHP20396 242 aaPredicted RBP12.14□□□□□ -0.47
SNX13-210ENST00000494402 IFNLR1Q8IU57 520 aaPredicted RBP12.13□□□□□ -0.47
SNX13-210ENST00000494402 TSHZ2Q9NRE2 1034 aa12.13□□□□□ -0.47
SNX13-210ENST00000494402 SPRYD3Q8NCJ5 442 aa12.11□□□□□ -0.47
SNX13-210ENST00000494402 NPM1P06748 294 aaKnown RBP eCLIP12.08□□□□□ -0.48
SNX13-210ENST00000494402 DNAJC5Q9H3Z4 198 aa12.02□□□□□ -0.49
SNX13-210ENST00000494402 POLA2Q14181 598 aa12□□□□□ -0.49
SNX13-210ENST00000494402 SPDYE4A6NLX3 237 aa11.96□□□□□ -0.49
SNX13-210ENST00000494402 ECM2O94769 699 aaPredicted RBP11.96□□□□□ -0.49
SNX13-210ENST00000494402 PROM2Q8N271 834 aa11.94□□□□□ -0.5
SNX13-210ENST00000494402 SUPT5HO00267 1087 aaKnown RBP11.9□□□□□ -0.5
SNX13-210ENST00000494402 ABCB7O75027 752 aa11.9□□□□□ -0.5
SNX13-210ENST00000494402 MKRN4PQ13434 485 aaPredicted RBP11.9□□□□□ -0.5
SNX13-210ENST00000494402 NPM2Q86SE8 214 aaKnown RBP11.89□□□□□ -0.51
SNX13-210ENST00000494402 ZBTB12Q9Y330 459 aaPredicted RBP11.86□□□□□ -0.51
SNX13-210ENST00000494402 CHRDL2Q6WN34 429 aa11.84□□□□□ -0.51
SNX13-210ENST00000494402 SP7Q8TDD2 431 aaPredicted RBP11.83□□□□□ -0.52
SNX13-210ENST00000494402 SPOCK2Q92563 424 aa11.8□□□□□ -0.52
SNX13-210ENST00000494402 KLHL34Q8N239 644 aa11.79□□□□□ -0.52
SNX13-210ENST00000494402 RGL2O15211 777 aa11.77□□□□□ -0.53
SNX13-210ENST00000494402 RBM42Q9BTD8 480 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms