RNA–Protein interactions for RNA: ENST00000490723.1

PHC3-212, Transcript of polyhomeotic homolog 3, humanhuman

TSL 2

Gene PHC3, Length 264 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-212ENST00000490723 AEBP2Q6ZN18 517 aaPredicted RBP24.34■■□□□ 1.49
PHC3-212ENST00000490723 CHIC1Q5VXU3 224 aa23.66■■□□□ 1.38
PHC3-212ENST00000490723 PHF23Q9BUL5 403 aaPredicted RBP20.81■□□□□ 0.92
PHC3-212ENST00000490723 SENP3Q9H4L4 574 aaPredicted RBP20.65■□□□□ 0.9
PHC3-212ENST00000490723 FOXD1Q16676 465 aa19.2■□□□□ 0.66
PHC3-212ENST00000490723 PLPPR3Q6T4P5 718 aa19.18■□□□□ 0.66
PHC3-212ENST00000490723 ADRA2BP18089 450 aa18.41■□□□□ 0.54
PHC3-212ENST00000490723 PPP6R1Q9UPN7 881 aa18.41■□□□□ 0.54
PHC3-212ENST00000490723 PIAS4Q8N2W9 510 aaPredicted RBP18.1■□□□□ 0.49
PHC3-212ENST00000490723 MSH5O43196 834 aa17.72■□□□□ 0.43
PHC3-212ENST00000490723 PPP4R3CPQ6ZMV5 832 aa16.91■□□□□ 0.3
PHC3-212ENST00000490723 SCAF1Q9H7N4 1312 aaKnown RBP16.81■□□□□ 0.28
PHC3-212ENST00000490723 MAPK8IP2Q13387 824 aaPredicted RBP16.74■□□□□ 0.27
PHC3-212ENST00000490723 DMRT2Q9Y5R5 561 aa16.46■□□□□ 0.23
PHC3-212ENST00000490723 CNKSR2Q8WXI2 1034 aa16.43■□□□□ 0.22
PHC3-212ENST00000490723 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
PHC3-212ENST00000490723 KCNA4P22459 653 aa16.41■□□□□ 0.22
PHC3-212ENST00000490723 POTEDQ86YR6 584 aa16.33■□□□□ 0.2
PHC3-212ENST00000490723 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
PHC3-212ENST00000490723 RNF216Q9NWF9 866 aaPredicted RBP16.12■□□□□ 0.17
PHC3-212ENST00000490723 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
PHC3-212ENST00000490723 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
PHC3-212ENST00000490723 SLC4A1APQ9BWU0 796 aaKnown RBP15.61■□□□□ 0.09
PHC3-212ENST00000490723 DNAJC5BQ9UF47 199 aa15.61■□□□□ 0.09
PHC3-212ENST00000490723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.38■□□□□ 0.051e-7■■□□□ 13.7
PHC3-212ENST00000490723 SLC4A2P04920 1241 aa15.3■□□□□ 0.04
PHC3-212ENST00000490723 RNF39Q9H2S5 420 aa15.17■□□□□ 0.02
PHC3-212ENST00000490723 FOXD4L1Q9NU39 408 aa15.12■□□□□ 0.01
PHC3-212ENST00000490723 EHMT2Q96KQ7 1210 aa15.11■□□□□ 0.01
PHC3-212ENST00000490723 ZBTB22O15209 634 aa15.09■□□□□ 0.01
PHC3-212ENST00000490723 U3KPZ7 1027 aaPredicted RBP15.09■□□□□ 0.01
PHC3-212ENST00000490723 C1QBPQ07021 282 aaKnown RBP14.98□□□□□ -0.01
PHC3-212ENST00000490723 MYCNP04198 464 aaPredicted RBP14.95□□□□□ -0.02
PHC3-212ENST00000490723 CSRNP3Q8WYN3 585 aa14.93□□□□□ -0.02
PHC3-212ENST00000490723 CACNB1Q02641 598 aaPredicted RBP14.9□□□□□ -0.02
PHC3-212ENST00000490723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
PHC3-212ENST00000490723 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
PHC3-212ENST00000490723 SAMD1Q6SPF0 538 aaPredicted RBP14.8□□□□□ -0.04
PHC3-212ENST00000490723 SPINK5Q9NQ38 1064 aaPredicted RBP14.73□□□□□ -0.05
PHC3-212ENST00000490723 APLP2Q06481 763 aa14.72□□□□□ -0.05
PHC3-212ENST00000490723 CAPN15O75808 1086 aa14.69□□□□□ -0.06
PHC3-212ENST00000490723 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
PHC3-212ENST00000490723 ATF5Q9Y2D1 282 aaPredicted RBP14.59□□□□□ -0.07
PHC3-212ENST00000490723 ATXN8OSP0DMR3 200 aa14.55□□□□□ -0.08
PHC3-212ENST00000490723 ZNF219Q9P2Y4 722 aaPredicted RBP14.54□□□□□ -0.08
PHC3-212ENST00000490723 ABCB7O75027 752 aa14.42□□□□□ -0.1
PHC3-212ENST00000490723 DSG3P32926 999 aa14.42□□□□□ -0.1
PHC3-212ENST00000490723 POLA2Q14181 598 aa14.32□□□□□ -0.12
PHC3-212ENST00000490723 ZBTB12Q9Y330 459 aaPredicted RBP14.03□□□□□ -0.16
PHC3-212ENST00000490723 FBLN2P98095 1184 aa13.97□□□□□ -0.17
PHC3-212ENST00000490723 MKRN4PQ13434 485 aaPredicted RBP13.93□□□□□ -0.18
PHC3-212ENST00000490723 OSCARQ8IYS5 282 aa13.84□□□□□ -0.19
PHC3-212ENST00000490723 RBM42Q9BTD8 480 aaKnown RBP13.73□□□□□ -0.21
PHC3-212ENST00000490723 SPDYE2BA6NHP3 402 aa13.65□□□□□ -0.22
PHC3-212ENST00000490723 SPDYE6P0CI01 402 aa13.65□□□□□ -0.22
PHC3-212ENST00000490723 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
PHC3-212ENST00000490723 ZNF692Q9BU19 519 aaPredicted RBP13.63□□□□□ -0.23
PHC3-212ENST00000490723 SPDYE4A6NLX3 237 aa13.59□□□□□ -0.23
PHC3-212ENST00000490723 FKBP8Q14318 412 aa13.54□□□□□ -0.24
PHC3-212ENST00000490723 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
PHC3-212ENST00000490723 SSUH2Q9Y2M2 353 aa13.52□□□□□ -0.25
PHC3-212ENST00000490723 PABPN1Q86U42 306 aaKnown RBP eCLIP13.45□□□□□ -0.26
PHC3-212ENST00000490723 REM2Q8IYK8 340 aaPredicted RBP13.43□□□□□ -0.26
PHC3-212ENST00000490723 CLEC11AQ9Y240 323 aa13.3□□□□□ -0.28
PHC3-212ENST00000490723 PITPNM1O00562 1244 aa13.29□□□□□ -0.28
PHC3-212ENST00000490723 SPDYE1Q8NFV5 336 aaPredicted RBP13.29□□□□□ -0.28
PHC3-212ENST00000490723 PROM2Q8N271 834 aa13.27□□□□□ -0.29
PHC3-212ENST00000490723 CHRDL2Q6WN34 429 aa13.22□□□□□ -0.29
PHC3-212ENST00000490723 STAG3Q9UJ98 1225 aa13.17□□□□□ -0.3
PHC3-212ENST00000490723 PRR29P0C7W0 189 aa13.13□□□□□ -0.31
PHC3-212ENST00000490723 FBXO3Q9UK99 471 aa13.04□□□□□ -0.32
PHC3-212ENST00000490723 FXR2P51116 673 aaKnown RBP eCLIP13.03□□□□□ -0.32
PHC3-212ENST00000490723 PIP4P2Q8N4L2 257 aa13.03□□□□□ -0.32
PHC3-212ENST00000490723 CHADLQ6NUI6 762 aa12.98□□□□□ -0.33
PHC3-212ENST00000490723 PRKAR2AP13861 404 aaKnown RBP12.97□□□□□ -0.33
PHC3-212ENST00000490723 MIER1Q8N108 512 aa12.92□□□□□ -0.34
PHC3-212ENST00000490723 POTEHQ6S545 545 aa12.91□□□□□ -0.34
PHC3-212ENST00000490723 CREBZFQ9NS37 354 aa12.91□□□□□ -0.34
PHC3-212ENST00000490723 PLCD3Q8N3E9 789 aa12.9□□□□□ -0.34
PHC3-212ENST00000490723 VASPP50552 380 aaPredicted RBP12.87□□□□□ -0.35
PHC3-212ENST00000490723 PLEKHG5O94827 1062 aa12.84□□□□□ -0.35
PHC3-212ENST00000490723 FARP1Q9Y4F1 1045 aaPredicted RBP12.8□□□□□ -0.36
PHC3-212ENST00000490723 MNX1P50219 401 aaPredicted RBP12.74□□□□□ -0.37
PHC3-212ENST00000490723 KLHL34Q8N239 644 aa12.73□□□□□ -0.37
PHC3-212ENST00000490723 NPM1P06748 294 aaKnown RBP eCLIP12.7□□□□□ -0.38
PHC3-212ENST00000490723 IFNLR1Q8IU57 520 aaPredicted RBP12.7□□□□□ -0.38
PHC3-212ENST00000490723 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
PHC3-212ENST00000490723 HAX1O00165 279 aa12.68□□□□□ -0.38
PHC3-212ENST00000490723 C19orf67A6NJJ6 358 aa12.59□□□□□ -0.39
PHC3-212ENST00000490723 CD44P16070 742 aaKnown RBP12.59□□□□□ -0.39
PHC3-212ENST00000490723 NUBP1P53384 320 aa12.56□□□□□ -0.4
PHC3-212ENST00000490723 SPOCK2Q92563 424 aa12.56□□□□□ -0.4
PHC3-212ENST00000490723 EVX2Q03828 476 aa12.55□□□□□ -0.4
PHC3-212ENST00000490723 RASEFQ8IZ41 740 aa12.54□□□□□ -0.4
PHC3-212ENST00000490723 TSPYL2Q9H2G4 693 aaPredicted RBP12.54□□□□□ -0.4
PHC3-212ENST00000490723 PAK3O75914 559 aaPredicted RBP12.53□□□□□ -0.4
PHC3-212ENST00000490723 ZRANB1Q9UGI0 708 aa12.52□□□□□ -0.41
PHC3-212ENST00000490723 DCAF8Q5TAQ9 597 aa12.48□□□□□ -0.41
PHC3-212ENST00000490723 FAM212AQ96EL1 285 aa12.48□□□□□ -0.41
PHC3-212ENST00000490723 CIZ1Q9ULV3 898 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms