RNA–Protein interactions for RNA: ENST00000489019.6

CALD1-221, Transcript of caldesmon 1, humanhuman

TSL 5

Gene CALD1, Length 422 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-221ENST00000489019 AEBP2Q6ZN18 517 aaPredicted RBP15.52■□□□□ 0.08
CALD1-221ENST00000489019 CHIC1Q5VXU3 224 aa15□□□□□ -0.01
CALD1-221ENST00000489019 PHF23Q9BUL5 403 aaPredicted RBP13.22□□□□□ -0.29
CALD1-221ENST00000489019 SENP3Q9H4L4 574 aaPredicted RBP13.11□□□□□ -0.31
CALD1-221ENST00000489019 FOXD1Q16676 465 aa12.23□□□□□ -0.45
CALD1-221ENST00000489019 PLPPR3Q6T4P5 718 aa12.1□□□□□ -0.47
CALD1-221ENST00000489019 PPP6R1Q9UPN7 881 aa11.71□□□□□ -0.53
CALD1-221ENST00000489019 ADRA2BP18089 450 aa11.67□□□□□ -0.54
CALD1-221ENST00000489019 PIAS4Q8N2W9 510 aaPredicted RBP11.48□□□□□ -0.57
CALD1-221ENST00000489019 MSH5O43196 834 aa11.26□□□□□ -0.61
CALD1-221ENST00000489019 PPP4R3CPQ6ZMV5 832 aa10.67□□□□□ -0.7
CALD1-221ENST00000489019 MAPK8IP2Q13387 824 aaPredicted RBP10.64□□□□□ -0.71
CALD1-221ENST00000489019 SCAF1Q9H7N4 1312 aaKnown RBP10.59□□□□□ -0.71
CALD1-221ENST00000489019 POTEDQ86YR6 584 aa10.5□□□□□ -0.73
CALD1-221ENST00000489019 DMRT2Q9Y5R5 561 aa10.47□□□□□ -0.73
CALD1-221ENST00000489019 CNKSR2Q8WXI2 1034 aa10.38□□□□□ -0.75
CALD1-221ENST00000489019 KCNA4P22459 653 aa10.33□□□□□ -0.76
CALD1-221ENST00000489019 NCBP3Q53F19 620 aaKnown RBP10.3□□□□□ -0.76
CALD1-221ENST00000489019 NPM3O75607 178 aaKnown RBP10.23□□□□□ -0.77
CALD1-221ENST00000489019 HOXD11P31277 338 aaPredicted RBP10.21□□□□□ -0.77
CALD1-221ENST00000489019 RNF216Q9NWF9 866 aaPredicted RBP10.21□□□□□ -0.77
CALD1-221ENST00000489019 DCAF8L1A6NGE4 600 aa10□□□□□ -0.81
CALD1-221ENST00000489019 DNAJC5BQ9UF47 199 aa9.92□□□□□ -0.82
CALD1-221ENST00000489019 SLC4A1APQ9BWU0 796 aaKnown RBP9.77□□□□□ -0.85
CALD1-221ENST00000489019 SLC4A2P04920 1241 aa9.7□□□□□ -0.86
CALD1-221ENST00000489019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.69□□□□□ -0.863e-20■□□□□ 10.1
CALD1-221ENST00000489019 RNF39Q9H2S5 420 aa9.68□□□□□ -0.86
CALD1-221ENST00000489019 U3KPZ7 1027 aaPredicted RBP9.58□□□□□ -0.88
CALD1-221ENST00000489019 ZBTB22O15209 634 aa9.53□□□□□ -0.88
CALD1-221ENST00000489019 C1QBPQ07021 282 aaKnown RBP9.52□□□□□ -0.89
CALD1-221ENST00000489019 FOXD4L1Q9NU39 408 aa9.49□□□□□ -0.89
CALD1-221ENST00000489019 CACNB1Q02641 598 aaPredicted RBP9.48□□□□□ -0.89
CALD1-221ENST00000489019 MYCNP04198 464 aaPredicted RBP9.41□□□□□ -0.9
CALD1-221ENST00000489019 EHMT2Q96KQ7 1210 aa9.39□□□□□ -0.91
CALD1-221ENST00000489019 CSRNP3Q8WYN3 585 aa9.36□□□□□ -0.91
CALD1-221ENST00000489019 SPINK5Q9NQ38 1064 aaPredicted RBP9.36□□□□□ -0.91
CALD1-221ENST00000489019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.34□□□□□ -0.91
CALD1-221ENST00000489019 HNRNPUL2Q1KMD3 747 aaKnown RBP9.34□□□□□ -0.91
CALD1-221ENST00000489019 SAMD1Q6SPF0 538 aaPredicted RBP9.32□□□□□ -0.92
CALD1-221ENST00000489019 CAPN15O75808 1086 aa9.27□□□□□ -0.93
CALD1-221ENST00000489019 ATF5Q9Y2D1 282 aaPredicted RBP9.25□□□□□ -0.93
CALD1-221ENST00000489019 APLP2Q06481 763 aa9.24□□□□□ -0.93
CALD1-221ENST00000489019 TRHP20396 242 aaPredicted RBP9.22□□□□□ -0.93
CALD1-221ENST00000489019 DSG3P32926 999 aa9.18□□□□□ -0.94
CALD1-221ENST00000489019 ZNF219Q9P2Y4 722 aaPredicted RBP9.18□□□□□ -0.94
CALD1-221ENST00000489019 ATXN8OSP0DMR3 200 aa9.15□□□□□ -0.94
CALD1-221ENST00000489019 ABCB7O75027 752 aa9.12□□□□□ -0.95
CALD1-221ENST00000489019 POLA2Q14181 598 aa9.05□□□□□ -0.96
CALD1-221ENST00000489019 ZBTB12Q9Y330 459 aaPredicted RBP8.83□□□□□ -1
CALD1-221ENST00000489019 MKRN4PQ13434 485 aaPredicted RBP8.82□□□□□ -1
CALD1-221ENST00000489019 FBLN2P98095 1184 aa8.76□□□□□ -1.01
CALD1-221ENST00000489019 OSCARQ8IYS5 282 aa8.76□□□□□ -1.01
CALD1-221ENST00000489019 RBM42Q9BTD8 480 aaKnown RBP8.69□□□□□ -1.02
CALD1-221ENST00000489019 SPDYE2BA6NHP3 402 aa8.61□□□□□ -1.03
CALD1-221ENST00000489019 SPDYE6P0CI01 402 aa8.61□□□□□ -1.03
CALD1-221ENST00000489019 SPDYE2Q495Y8 402 aa8.61□□□□□ -1.03
CALD1-221ENST00000489019 AKT1S1Q96B36 256 aa8.58□□□□□ -1.04
CALD1-221ENST00000489019 ZNF692Q9BU19 519 aaPredicted RBP8.57□□□□□ -1.04
CALD1-221ENST00000489019 SSUH2Q9Y2M2 353 aa8.56□□□□□ -1.04
CALD1-221ENST00000489019 SPDYE4A6NLX3 237 aa8.52□□□□□ -1.05
CALD1-221ENST00000489019 REM2Q8IYK8 340 aaPredicted RBP8.52□□□□□ -1.05
CALD1-221ENST00000489019 PABPN1Q86U42 306 aaKnown RBP eCLIP8.47□□□□□ -1.05
CALD1-221ENST00000489019 PITPNM1O00562 1244 aa8.44□□□□□ -1.06
CALD1-221ENST00000489019 FKBP8Q14318 412 aa8.44□□□□□ -1.06
CALD1-221ENST00000489019 CHRDL2Q6WN34 429 aa8.4□□□□□ -1.06
CALD1-221ENST00000489019 PROM2Q8N271 834 aa8.39□□□□□ -1.07
CALD1-221ENST00000489019 SPDYE1Q8NFV5 336 aaPredicted RBP8.38□□□□□ -1.07
CALD1-221ENST00000489019 CLEC11AQ9Y240 323 aa8.37□□□□□ -1.07
CALD1-221ENST00000489019 FXR2P51116 673 aaKnown RBP eCLIP8.3□□□□□ -1.08
CALD1-221ENST00000489019 PIP4P2Q8N4L2 257 aa8.3□□□□□ -1.08
CALD1-221ENST00000489019 POTEHQ6S545 545 aa8.28□□□□□ -1.08
CALD1-221ENST00000489019 PRR29P0C7W0 189 aa8.27□□□□□ -1.09
CALD1-221ENST00000489019 STAG3Q9UJ98 1225 aa8.25□□□□□ -1.09
CALD1-221ENST00000489019 PRKAR2AP13861 404 aaKnown RBP8.21□□□□□ -1.1
CALD1-221ENST00000489019 CHADLQ6NUI6 762 aa8.21□□□□□ -1.1
CALD1-221ENST00000489019 CREBZFQ9NS37 354 aa8.17□□□□□ -1.1
CALD1-221ENST00000489019 FBXO3Q9UK99 471 aa8.12□□□□□ -1.11
CALD1-221ENST00000489019 MNX1P50219 401 aaPredicted RBP8.1□□□□□ -1.11
CALD1-221ENST00000489019 FARP1Q9Y4F1 1045 aaPredicted RBP8.09□□□□□ -1.11
CALD1-221ENST00000489019 MIER1Q8N108 512 aa8.08□□□□□ -1.12
CALD1-221ENST00000489019 VASPP50552 380 aaPredicted RBP8.05□□□□□ -1.12
CALD1-221ENST00000489019 PLCD3Q8N3E9 789 aa8.04□□□□□ -1.12
CALD1-221ENST00000489019 HAX1O00165 279 aa8.03□□□□□ -1.12
CALD1-221ENST00000489019 EVX2Q03828 476 aa8.03□□□□□ -1.12
CALD1-221ENST00000489019 C19orf67A6NJJ6 358 aa8.01□□□□□ -1.13
CALD1-221ENST00000489019 PLEKHG5O94827 1062 aa7.99□□□□□ -1.13
CALD1-221ENST00000489019 NPM1P06748 294 aaKnown RBP eCLIP7.97□□□□□ -1.13
CALD1-221ENST00000489019 IFNLR1Q8IU57 520 aaPredicted RBP7.97□□□□□ -1.13
CALD1-221ENST00000489019 CD44P16070 742 aaKnown RBP7.96□□□□□ -1.14
CALD1-221ENST00000489019 ZBTB47Q9UFB7 747 aaPredicted RBP7.93□□□□□ -1.14
CALD1-221ENST00000489019 NUBP1P53384 320 aa7.92□□□□□ -1.14
CALD1-221ENST00000489019 RASEFQ8IZ41 740 aa7.92□□□□□ -1.14
CALD1-221ENST00000489019 KLHL34Q8N239 644 aa7.91□□□□□ -1.14
CALD1-221ENST00000489019 SP7Q8TDD2 431 aaPredicted RBP7.9□□□□□ -1.14
CALD1-221ENST00000489019 ZRANB1Q9UGI0 708 aa7.9□□□□□ -1.14
CALD1-221ENST00000489019 TSPYL2Q9H2G4 693 aaPredicted RBP7.88□□□□□ -1.15
CALD1-221ENST00000489019 PAK3O75914 559 aaPredicted RBP7.85□□□□□ -1.15
CALD1-221ENST00000489019 ZNF579Q8NAF0 562 aaKnown RBP7.85□□□□□ -1.15
CALD1-221ENST00000489019 CCDC61Q9Y6R9 512 aa7.85□□□□□ -1.15
CALD1-221ENST00000489019 SPOCK2Q92563 424 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms