RNA–Protein interactions for RNA: ENST00000488937.1

PRPF4-203, Transcript of pre-mRNA processing factor 4, humanhuman

TSL 3

Gene PRPF4, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-203ENST00000488937 AEBP2Q6ZN18 517 aaPredicted RBP22.94■■□□□ 1.26
PRPF4-203ENST00000488937 CHIC1Q5VXU3 224 aa21.47■■□□□ 1.03
PRPF4-203ENST00000488937 SENP3Q9H4L4 574 aaPredicted RBP19.8■□□□□ 0.76
PRPF4-203ENST00000488937 PHF23Q9BUL5 403 aaPredicted RBP19.35■□□□□ 0.69
PRPF4-203ENST00000488937 POTEDQ86YR6 584 aa19.17■□□□□ 0.66
PRPF4-203ENST00000488937 FOXD1Q16676 465 aa18.54■□□□□ 0.56
PRPF4-203ENST00000488937 MSH5O43196 834 aa17.82■□□□□ 0.44
PRPF4-203ENST00000488937 PIAS4Q8N2W9 510 aaPredicted RBP17.06■□□□□ 0.32
PRPF4-203ENST00000488937 PPP6R1Q9UPN7 881 aa16.49■□□□□ 0.23
PRPF4-203ENST00000488937 ADRA2BP18089 450 aa16.36■□□□□ 0.21
PRPF4-203ENST00000488937 PLPPR3Q6T4P5 718 aa16.13■□□□□ 0.17
PRPF4-203ENST00000488937 CACNB1Q02641 598 aaPredicted RBP15.91■□□□□ 0.14
PRPF4-203ENST00000488937 DMRT2Q9Y5R5 561 aa15.52■□□□□ 0.08
PRPF4-203ENST00000488937 MAPK8IP2Q13387 824 aaPredicted RBP15.34■□□□□ 0.05
PRPF4-203ENST00000488937 RNF39Q9H2S5 420 aa15.09■□□□□ 0.01
PRPF4-203ENST00000488937 SCAF1Q9H7N4 1312 aaKnown RBP15.06■□□□□ 0
PRPF4-203ENST00000488937 DCAF8L1A6NGE4 600 aa14.87□□□□□ -0.03
PRPF4-203ENST00000488937 C1QBPQ07021 282 aaKnown RBP14.83□□□□□ -0.04
PRPF4-203ENST00000488937 POTEHQ6S545 545 aa14.83□□□□□ -0.04
PRPF4-203ENST00000488937 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
PRPF4-203ENST00000488937 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
PRPF4-203ENST00000488937 RNF216Q9NWF9 866 aaPredicted RBP14.15□□□□□ -0.14
PRPF4-203ENST00000488937 CNKSR2Q8WXI2 1034 aa13.98□□□□□ -0.17
PRPF4-203ENST00000488937 PPP4R3CPQ6ZMV5 832 aa13.96□□□□□ -0.17
PRPF4-203ENST00000488937 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.81□□□□□ -0.2
PRPF4-203ENST00000488937 DSG3P32926 999 aa13.75□□□□□ -0.21
PRPF4-203ENST00000488937 CAPN15O75808 1086 aa13.54□□□□□ -0.24
PRPF4-203ENST00000488937 SPINK5Q9NQ38 1064 aaPredicted RBP13.51□□□□□ -0.25
PRPF4-203ENST00000488937 SP7Q8TDD2 431 aaPredicted RBP13.4□□□□□ -0.26
PRPF4-203ENST00000488937 U3KPZ7 1027 aaPredicted RBP13.4□□□□□ -0.26
PRPF4-203ENST00000488937 CHRDL2Q6WN34 429 aa13.3□□□□□ -0.28
PRPF4-203ENST00000488937 RBM42Q9BTD8 480 aaKnown RBP13.19□□□□□ -0.3
PRPF4-203ENST00000488937 NCBP3Q53F19 620 aaKnown RBP13.14□□□□□ -0.31
PRPF4-203ENST00000488937 ABCB7O75027 752 aa13.1□□□□□ -0.31
PRPF4-203ENST00000488937 TRHP20396 242 aaPredicted RBP13.06□□□□□ -0.32
PRPF4-203ENST00000488937 ZNF219Q9P2Y4 722 aaPredicted RBP13.06□□□□□ -0.32
PRPF4-203ENST00000488937 APLP2Q06481 763 aa12.98□□□□□ -0.33
PRPF4-203ENST00000488937 NPM3O75607 178 aaKnown RBP12.91□□□□□ -0.34
PRPF4-203ENST00000488937 HAX1O00165 279 aa12.79□□□□□ -0.36
PRPF4-203ENST00000488937 PIP4P2Q8N4L2 257 aa12.74□□□□□ -0.37
PRPF4-203ENST00000488937 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.71□□□□□ -0.37
PRPF4-203ENST00000488937 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
PRPF4-203ENST00000488937 AKT1S1Q96B36 256 aa12.64□□□□□ -0.39
PRPF4-203ENST00000488937 SLC4A2P04920 1241 aa12.61□□□□□ -0.39
PRPF4-203ENST00000488937 PLSCR2Q9NRY7 297 aa12.61□□□□□ -0.39
PRPF4-203ENST00000488937 SAMD1Q6SPF0 538 aaPredicted RBP12.57□□□□□ -0.4
PRPF4-203ENST00000488937 LHX8Q68G74 356 aa12.54□□□□□ -0.4
PRPF4-203ENST00000488937 EVX2Q03828 476 aa12.53□□□□□ -0.4
PRPF4-203ENST00000488937 FXR2P51116 673 aaKnown RBP eCLIP12.5□□□□□ -0.41
PRPF4-203ENST00000488937 REM2Q8IYK8 340 aaPredicted RBP12.5□□□□□ -0.41
PRPF4-203ENST00000488937 POLA2Q14181 598 aa12.49□□□□□ -0.41
PRPF4-203ENST00000488937 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
PRPF4-203ENST00000488937 ZBTB12Q9Y330 459 aaPredicted RBP12.22□□□□□ -0.45
PRPF4-203ENST00000488937 GABBR2O75899 941 aa12.21□□□□□ -0.45
PRPF4-203ENST00000488937 C19orf67A6NJJ6 358 aa12.14□□□□□ -0.47
PRPF4-203ENST00000488937 OSCARQ8IYS5 282 aa12.11□□□□□ -0.47
PRPF4-203ENST00000488937 PRKAR2AP13861 404 aaKnown RBP12.03□□□□□ -0.48
PRPF4-203ENST00000488937 MYCNP04198 464 aaPredicted RBP11.99□□□□□ -0.49
PRPF4-203ENST00000488937 POTEIP0CG38 1075 aa11.93□□□□□ -0.5
PRPF4-203ENST00000488937 POTEMA6NI47 508 aa11.86□□□□□ -0.51
PRPF4-203ENST00000488937 PCDH10Q9P2E7 1040 aa11.81□□□□□ -0.52
PRPF4-203ENST00000488937 POTEGQ6S5H5 508 aa11.78□□□□□ -0.52
PRPF4-203ENST00000488937 SPDYE1Q8NFV5 336 aaPredicted RBP11.78□□□□□ -0.52
PRPF4-203ENST00000488937 CLEC11AQ9Y240 323 aa11.76□□□□□ -0.53
PRPF4-203ENST00000488937 CLCN6P51797 869 aa11.75□□□□□ -0.53
PRPF4-203ENST00000488937 ATF5Q9Y2D1 282 aaPredicted RBP11.74□□□□□ -0.53
PRPF4-203ENST00000488937 SPDYE2BA6NHP3 402 aa11.72□□□□□ -0.53
PRPF4-203ENST00000488937 SPDYE6P0CI01 402 aa11.72□□□□□ -0.53
PRPF4-203ENST00000488937 SPDYE2Q495Y8 402 aa11.72□□□□□ -0.53
PRPF4-203ENST00000488937 OTUD5Q96G74 571 aa11.71□□□□□ -0.53
PRPF4-203ENST00000488937 KCNA4P22459 653 aa11.69□□□□□ -0.54
PRPF4-203ENST00000488937 DCBLD2Q96PD2 775 aa11.67□□□□□ -0.54
PRPF4-203ENST00000488937 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
PRPF4-203ENST00000488937 CD44P16070 742 aaKnown RBP11.59□□□□□ -0.55
PRPF4-203ENST00000488937 POTEB2H3BUK9 544 aa11.51□□□□□ -0.57
PRPF4-203ENST00000488937 PRR29P0C7W0 189 aa11.45□□□□□ -0.58
PRPF4-203ENST00000488937 SSUH2Q9Y2M2 353 aa11.44□□□□□ -0.58
PRPF4-203ENST00000488937 FBLN2P98095 1184 aa11.41□□□□□ -0.58
PRPF4-203ENST00000488937 FARP1Q9Y4F1 1045 aaPredicted RBP11.4□□□□□ -0.58
PRPF4-203ENST00000488937 ZNF579Q8NAF0 562 aaKnown RBP11.39□□□□□ -0.59
PRPF4-203ENST00000488937 ZNF692Q9BU19 519 aaPredicted RBP11.38□□□□□ -0.59
PRPF4-203ENST00000488937 LCE2DQ5TA82 110 aaPredicted RBP11.33□□□□□ -0.6
PRPF4-203ENST00000488937 GALR2O43603 387 aaPredicted RBP11.29□□□□□ -0.6
PRPF4-203ENST00000488937 FOXD4L1Q9NU39 408 aa11.27□□□□□ -0.61
PRPF4-203ENST00000488937 ZRANB1Q9UGI0 708 aa11.25□□□□□ -0.61
PRPF4-203ENST00000488937 FAM163AQ96GL9 167 aaPredicted RBP11.23□□□□□ -0.61
PRPF4-203ENST00000488937 MAMSTRQ6ZN01 415 aa11.22□□□□□ -0.61
PRPF4-203ENST00000488937 PABPN1Q86U42 306 aaKnown RBP eCLIP11.17□□□□□ -0.62
PRPF4-203ENST00000488937 POTEJP0CG39 1038 aa11.16□□□□□ -0.62
PRPF4-203ENST00000488937 MKRN4PQ13434 485 aaPredicted RBP11.16□□□□□ -0.62
PRPF4-203ENST00000488937 PELP1Q8IZL8 1130 aaKnown RBP11.16□□□□□ -0.62
PRPF4-203ENST00000488937 CDAN1Q8IWY9 1227 aa11.13□□□□□ -0.63
PRPF4-203ENST00000488937 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
PRPF4-203ENST00000488937 C7P10643 843 aa11.09□□□□□ -0.63
PRPF4-203ENST00000488937 ATXN8OSP0DMR3 200 aa11.08□□□□□ -0.64
PRPF4-203ENST00000488937 SLC39A7Q92504 469 aa11.07□□□□□ -0.64
PRPF4-203ENST00000488937 SCUBE2Q9NQ36 999 aa11.07□□□□□ -0.64
PRPF4-203ENST00000488937 ASTLQ6HA08 431 aaPredicted RBP11.02□□□□□ -0.65
PRPF4-203ENST00000488937 PHF12Q96QT6 1004 aa10.98□□□□□ -0.65
PRPF4-203ENST00000488937 MMRN1Q13201 1228 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms