RNA–Protein interactions for RNA: ENST00000488255.1

VPS8-224, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 2

Gene VPS8, Length 564 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-224ENST00000488255 AEBP2Q6ZN18 517 aaPredicted RBP27.27■■□□□ 1.96
VPS8-224ENST00000488255 CHIC1Q5VXU3 224 aa26.5■■□□□ 1.83
VPS8-224ENST00000488255 PHF23Q9BUL5 403 aaPredicted RBP23.32■■□□□ 1.32
VPS8-224ENST00000488255 SENP3Q9H4L4 574 aaPredicted RBP23.12■■□□□ 1.29
VPS8-224ENST00000488255 FOXD1Q16676 465 aa21.51■■□□□ 1.03
VPS8-224ENST00000488255 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
VPS8-224ENST00000488255 ADRA2BP18089 450 aa20.66■□□□□ 0.9
VPS8-224ENST00000488255 PPP6R1Q9UPN7 881 aa20.65■□□□□ 0.9
VPS8-224ENST00000488255 PIAS4Q8N2W9 510 aaPredicted RBP20.3■□□□□ 0.84
VPS8-224ENST00000488255 MSH5O43196 834 aa19.83■□□□□ 0.77
VPS8-224ENST00000488255 PPP4R3CPQ6ZMV5 832 aa18.96■□□□□ 0.63
VPS8-224ENST00000488255 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
VPS8-224ENST00000488255 MAPK8IP2Q13387 824 aaPredicted RBP18.79■□□□□ 0.6
VPS8-224ENST00000488255 DMRT2Q9Y5R5 561 aa18.43■□□□□ 0.54
VPS8-224ENST00000488255 KCNA4P22459 653 aa18.42■□□□□ 0.54
VPS8-224ENST00000488255 NCBP3Q53F19 620 aaKnown RBP18.4■□□□□ 0.54
VPS8-224ENST00000488255 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
VPS8-224ENST00000488255 POTEDQ86YR6 584 aa18.29■□□□□ 0.52
VPS8-224ENST00000488255 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
VPS8-224ENST00000488255 RNF216Q9NWF9 866 aaPredicted RBP18.04■□□□□ 0.48
VPS8-224ENST00000488255 HOXD11P31277 338 aaPredicted RBP17.98■□□□□ 0.47
VPS8-224ENST00000488255 DCAF8L1A6NGE4 600 aa17.83■□□□□ 0.44
VPS8-224ENST00000488255 SLC4A1APQ9BWU0 796 aaKnown RBP17.53■□□□□ 0.4
VPS8-224ENST00000488255 DNAJC5BQ9UF47 199 aa17.42■□□□□ 0.38
VPS8-224ENST00000488255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS8-224ENST00000488255 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
VPS8-224ENST00000488255 EHMT2Q96KQ7 1210 aa17.01■□□□□ 0.31
VPS8-224ENST00000488255 RNF39Q9H2S5 420 aa16.98■□□□□ 0.31
VPS8-224ENST00000488255 FOXD4L1Q9NU39 408 aa16.94■□□□□ 0.3
VPS8-224ENST00000488255 ZBTB22O15209 634 aa16.93■□□□□ 0.3
VPS8-224ENST00000488255 U3KPZ7 1027 aaPredicted RBP16.91■□□□□ 0.3
VPS8-224ENST00000488255 C1QBPQ07021 282 aaKnown RBP16.76■□□□□ 0.27
VPS8-224ENST00000488255 MYCNP04198 464 aaPredicted RBP16.75■□□□□ 0.27
VPS8-224ENST00000488255 CSRNP3Q8WYN3 585 aa16.75■□□□□ 0.27
VPS8-224ENST00000488255 CACNB1Q02641 598 aaPredicted RBP16.71■□□□□ 0.27
VPS8-224ENST00000488255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.62■□□□□ 0.25
VPS8-224ENST00000488255 HNRNPUL2Q1KMD3 747 aaKnown RBP16.62■□□□□ 0.25
VPS8-224ENST00000488255 SAMD1Q6SPF0 538 aaPredicted RBP16.58■□□□□ 0.24
VPS8-224ENST00000488255 SPINK5Q9NQ38 1064 aaPredicted RBP16.52■□□□□ 0.24
VPS8-224ENST00000488255 CAPN15O75808 1086 aa16.49■□□□□ 0.23
VPS8-224ENST00000488255 APLP2Q06481 763 aa16.47■□□□□ 0.23
VPS8-224ENST00000488255 TRHP20396 242 aaPredicted RBP16.41■□□□□ 0.22
VPS8-224ENST00000488255 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
VPS8-224ENST00000488255 ATXN8OSP0DMR3 200 aa16.28■□□□□ 0.2
VPS8-224ENST00000488255 ZNF219Q9P2Y4 722 aaPredicted RBP16.28■□□□□ 0.2
VPS8-224ENST00000488255 ABCB7O75027 752 aa16.19■□□□□ 0.18
VPS8-224ENST00000488255 DSG3P32926 999 aa16.15■□□□□ 0.18
VPS8-224ENST00000488255 POLA2Q14181 598 aa16.07■□□□□ 0.16
VPS8-224ENST00000488255 ZBTB12Q9Y330 459 aaPredicted RBP15.7■□□□□ 0.1
VPS8-224ENST00000488255 FBLN2P98095 1184 aa15.67■□□□□ 0.1
VPS8-224ENST00000488255 MKRN4PQ13434 485 aaPredicted RBP15.62■□□□□ 0.09
VPS8-224ENST00000488255 OSCARQ8IYS5 282 aa15.54■□□□□ 0.08
VPS8-224ENST00000488255 RBM42Q9BTD8 480 aaKnown RBP15.37■□□□□ 0.05
VPS8-224ENST00000488255 SPDYE2BA6NHP3 402 aa15.29■□□□□ 0.04
VPS8-224ENST00000488255 SPDYE6P0CI01 402 aa15.29■□□□□ 0.04
VPS8-224ENST00000488255 SPDYE2Q495Y8 402 aa15.29■□□□□ 0.04
VPS8-224ENST00000488255 ZNF692Q9BU19 519 aaPredicted RBP15.29■□□□□ 0.04
VPS8-224ENST00000488255 SPDYE4A6NLX3 237 aa15.24■□□□□ 0.03
VPS8-224ENST00000488255 FKBP8Q14318 412 aa15.21■□□□□ 0.03
VPS8-224ENST00000488255 AKT1S1Q96B36 256 aa15.16■□□□□ 0.02
VPS8-224ENST00000488255 SSUH2Q9Y2M2 353 aa15.14■□□□□ 0.01
VPS8-224ENST00000488255 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS8-224ENST00000488255 REM2Q8IYK8 340 aaPredicted RBP15.06■□□□□ 0
VPS8-224ENST00000488255 CLEC11AQ9Y240 323 aa14.94□□□□□ -0.02
VPS8-224ENST00000488255 PITPNM1O00562 1244 aa14.9□□□□□ -0.02
VPS8-224ENST00000488255 SPDYE1Q8NFV5 336 aaPredicted RBP14.89□□□□□ -0.03
VPS8-224ENST00000488255 PROM2Q8N271 834 aa14.85□□□□□ -0.03
VPS8-224ENST00000488255 CHRDL2Q6WN34 429 aa14.81□□□□□ -0.04
VPS8-224ENST00000488255 STAG3Q9UJ98 1225 aa14.75□□□□□ -0.05
VPS8-224ENST00000488255 PRR29P0C7W0 189 aa14.73□□□□□ -0.05
VPS8-224ENST00000488255 PIP4P2Q8N4L2 257 aa14.61□□□□□ -0.07
VPS8-224ENST00000488255 FBXO3Q9UK99 471 aa14.61□□□□□ -0.07
VPS8-224ENST00000488255 FXR2P51116 673 aaKnown RBP eCLIP14.58□□□□□ -0.08
VPS8-224ENST00000488255 CHADLQ6NUI6 762 aa14.57□□□□□ -0.08
VPS8-224ENST00000488255 PRKAR2AP13861 404 aaKnown RBP14.55□□□□□ -0.08
VPS8-224ENST00000488255 MIER1Q8N108 512 aa14.52□□□□□ -0.09
VPS8-224ENST00000488255 PLCD3Q8N3E9 789 aa14.49□□□□□ -0.09
VPS8-224ENST00000488255 CREBZFQ9NS37 354 aa14.48□□□□□ -0.09
VPS8-224ENST00000488255 POTEHQ6S545 545 aa14.47□□□□□ -0.09
VPS8-224ENST00000488255 VASPP50552 380 aaPredicted RBP14.44□□□□□ -0.1
VPS8-224ENST00000488255 PLEKHG5O94827 1062 aa14.42□□□□□ -0.1
VPS8-224ENST00000488255 FARP1Q9Y4F1 1045 aaPredicted RBP14.35□□□□□ -0.11
VPS8-224ENST00000488255 KLHL34Q8N239 644 aa14.32□□□□□ -0.12
VPS8-224ENST00000488255 MNX1P50219 401 aaPredicted RBP14.27□□□□□ -0.13
VPS8-224ENST00000488255 IFNLR1Q8IU57 520 aaPredicted RBP14.25□□□□□ -0.13
VPS8-224ENST00000488255 NPM1P06748 294 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS8-224ENST00000488255 HAX1O00165 279 aa14.23□□□□□ -0.13
VPS8-224ENST00000488255 ZBTB47Q9UFB7 747 aaPredicted RBP14.23□□□□□ -0.13
VPS8-224ENST00000488255 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
VPS8-224ENST00000488255 C19orf67A6NJJ6 358 aa14.1□□□□□ -0.15
VPS8-224ENST00000488255 SPOCK2Q92563 424 aa14.1□□□□□ -0.15
VPS8-224ENST00000488255 TSPYL2Q9H2G4 693 aaPredicted RBP14.09□□□□□ -0.15
VPS8-224ENST00000488255 RASEFQ8IZ41 740 aa14.08□□□□□ -0.16
VPS8-224ENST00000488255 NUBP1P53384 320 aa14.07□□□□□ -0.16
VPS8-224ENST00000488255 EVX2Q03828 476 aa14.07□□□□□ -0.16
VPS8-224ENST00000488255 PAK3O75914 559 aaPredicted RBP14.05□□□□□ -0.16
VPS8-224ENST00000488255 ZRANB1Q9UGI0 708 aa14.05□□□□□ -0.16
VPS8-224ENST00000488255 DCAF8Q5TAQ9 597 aa14.02□□□□□ -0.17
VPS8-224ENST00000488255 FAM212AQ96EL1 285 aa14□□□□□ -0.17
VPS8-224ENST00000488255 CIZ1Q9ULV3 898 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms