RNA–Protein interactions for RNA: ENST00000488023.1

HFM1-208, Transcript of HFM1, ATP dependent DNA helicase homolog, humanhuman

TSL 5

Gene HFM1, Length 1,699 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HFM1-208ENST00000488023 AEBP2Q6ZN18 517 aaPredicted RBP21.7■■□□□ 1.06
HFM1-208ENST00000488023 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
HFM1-208ENST00000488023 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
HFM1-208ENST00000488023 PHF23Q9BUL5 403 aaPredicted RBP18.25■□□□□ 0.51
HFM1-208ENST00000488023 POTEDQ86YR6 584 aa18.03■□□□□ 0.48
HFM1-208ENST00000488023 FOXD1Q16676 465 aa17.41■□□□□ 0.38
HFM1-208ENST00000488023 MSH5O43196 834 aa16.48■□□□□ 0.23
HFM1-208ENST00000488023 PIAS4Q8N2W9 510 aaPredicted RBP16.08■□□□□ 0.17
HFM1-208ENST00000488023 PPP6R1Q9UPN7 881 aa15.83■□□□□ 0.12
HFM1-208ENST00000488023 ADRA2BP18089 450 aa15.72■□□□□ 0.11
HFM1-208ENST00000488023 PLPPR3Q6T4P5 718 aa15.67■□□□□ 0.1
HFM1-208ENST00000488023 MAPK8IP2Q13387 824 aaPredicted RBP14.65□□□□□ -0.06
HFM1-208ENST00000488023 DMRT2Q9Y5R5 561 aa14.64□□□□□ -0.07
HFM1-208ENST00000488023 CACNB1Q02641 598 aaPredicted RBP14.52□□□□□ -0.08
HFM1-208ENST00000488023 SCAF1Q9H7N4 1312 aaKnown RBP14.33□□□□□ -0.11
HFM1-208ENST00000488023 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
HFM1-208ENST00000488023 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
HFM1-208ENST00000488023 HOXD11P31277 338 aaPredicted RBP13.87□□□□□ -0.19
HFM1-208ENST00000488023 POTEHQ6S545 545 aa13.78□□□□□ -0.2
HFM1-208ENST00000488023 C1QBPQ07021 282 aaKnown RBP13.77□□□□□ -0.21
HFM1-208ENST00000488023 PPP4R3CPQ6ZMV5 832 aa13.68□□□□□ -0.22
HFM1-208ENST00000488023 RNF216Q9NWF9 866 aaPredicted RBP13.59□□□□□ -0.23
HFM1-208ENST00000488023 CNKSR2Q8WXI2 1034 aa13.55□□□□□ -0.24
HFM1-208ENST00000488023 DNAJC5BQ9UF47 199 aa13.5□□□□□ -0.25
HFM1-208ENST00000488023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.18□□□□□ -0.3
HFM1-208ENST00000488023 DSG3P32926 999 aa12.94□□□□□ -0.34
HFM1-208ENST00000488023 NCBP3Q53F19 620 aaKnown RBP12.93□□□□□ -0.34
HFM1-208ENST00000488023 SPINK5Q9NQ38 1064 aaPredicted RBP12.87□□□□□ -0.35
HFM1-208ENST00000488023 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
HFM1-208ENST00000488023 CAPN15O75808 1086 aa12.84□□□□□ -0.35
HFM1-208ENST00000488023 NPM3O75607 178 aaKnown RBP12.78□□□□□ -0.36
HFM1-208ENST00000488023 ABCB7O75027 752 aa12.51□□□□□ -0.41
HFM1-208ENST00000488023 TRHP20396 242 aaPredicted RBP12.5□□□□□ -0.41
HFM1-208ENST00000488023 ZNF219Q9P2Y4 722 aaPredicted RBP12.43□□□□□ -0.42
HFM1-208ENST00000488023 SLC4A2P04920 1241 aa12.38□□□□□ -0.43
HFM1-208ENST00000488023 APLP2Q06481 763 aa12.38□□□□□ -0.43
HFM1-208ENST00000488023 CHRDL2Q6WN34 429 aa12.32□□□□□ -0.44
HFM1-208ENST00000488023 RBM42Q9BTD8 480 aaKnown RBP12.32□□□□□ -0.44
HFM1-208ENST00000488023 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.24□□□□□ -0.45
HFM1-208ENST00000488023 HNRNPUL2Q1KMD3 747 aaKnown RBP12.24□□□□□ -0.45
HFM1-208ENST00000488023 SP7Q8TDD2 431 aaPredicted RBP12.19□□□□□ -0.46
HFM1-208ENST00000488023 SAMD1Q6SPF0 538 aaPredicted RBP12.16□□□□□ -0.46
HFM1-208ENST00000488023 KCNA4P22459 653 aa12.03□□□□□ -0.48
HFM1-208ENST00000488023 POLA2Q14181 598 aa12.03□□□□□ -0.48
HFM1-208ENST00000488023 PLSCR2Q9NRY7 297 aa11.96□□□□□ -0.5
HFM1-208ENST00000488023 AKT1S1Q96B36 256 aa11.93□□□□□ -0.5
HFM1-208ENST00000488023 PIP4P2Q8N4L2 257 aa11.92□□□□□ -0.5
HFM1-208ENST00000488023 HAX1O00165 279 aa11.84□□□□□ -0.51
HFM1-208ENST00000488023 REM2Q8IYK8 340 aaPredicted RBP11.84□□□□□ -0.51
HFM1-208ENST00000488023 MYCNP04198 464 aaPredicted RBP11.81□□□□□ -0.52
HFM1-208ENST00000488023 FXR2P51116 673 aaKnown RBP eCLIP11.74□□□□□ -0.53
HFM1-208ENST00000488023 PITPNM1O00562 1244 aa11.72□□□□□ -0.53
HFM1-208ENST00000488023 ZBTB12Q9Y330 459 aaPredicted RBP11.71□□□□□ -0.54
HFM1-208ENST00000488023 EVX2Q03828 476 aa11.7□□□□□ -0.54
HFM1-208ENST00000488023 OSCARQ8IYS5 282 aa11.67□□□□□ -0.54
HFM1-208ENST00000488023 ATF5Q9Y2D1 282 aaPredicted RBP11.64□□□□□ -0.55
HFM1-208ENST00000488023 LHX8Q68G74 356 aa11.43□□□□□ -0.58
HFM1-208ENST00000488023 PRKAR2AP13861 404 aaKnown RBP11.4□□□□□ -0.58
HFM1-208ENST00000488023 C19orf67A6NJJ6 358 aa11.4□□□□□ -0.59
HFM1-208ENST00000488023 GABBR2O75899 941 aa11.37□□□□□ -0.59
HFM1-208ENST00000488023 FOXD4L1Q9NU39 408 aa11.37□□□□□ -0.59
HFM1-208ENST00000488023 SLC4A1APQ9BWU0 796 aaKnown RBP11.33□□□□□ -0.6
HFM1-208ENST00000488023 SPDYE2BA6NHP3 402 aa11.31□□□□□ -0.6
HFM1-208ENST00000488023 SPDYE6P0CI01 402 aa11.31□□□□□ -0.6
HFM1-208ENST00000488023 SPDYE2Q495Y8 402 aa11.31□□□□□ -0.6
HFM1-208ENST00000488023 CLEC11AQ9Y240 323 aa11.27□□□□□ -0.6
HFM1-208ENST00000488023 SPDYE1Q8NFV5 336 aaPredicted RBP11.26□□□□□ -0.61
HFM1-208ENST00000488023 FBLN2P98095 1184 aa11.16□□□□□ -0.62
HFM1-208ENST00000488023 POTEIP0CG38 1075 aa11.15□□□□□ -0.62
HFM1-208ENST00000488023 CHADLQ6NUI6 762 aa11.15□□□□□ -0.62
HFM1-208ENST00000488023 SSUH2Q9Y2M2 353 aa11.12□□□□□ -0.63
HFM1-208ENST00000488023 ZNF692Q9BU19 519 aaPredicted RBP11.08□□□□□ -0.64
HFM1-208ENST00000488023 ATXN8OSP0DMR3 200 aa11.08□□□□□ -0.64
HFM1-208ENST00000488023 MKRN4PQ13434 485 aaPredicted RBP11.07□□□□□ -0.64
HFM1-208ENST00000488023 ZBTB22O15209 634 aa11.06□□□□□ -0.64
HFM1-208ENST00000488023 PRR29P0C7W0 189 aa11.01□□□□□ -0.65
HFM1-208ENST00000488023 CD44P16070 742 aaKnown RBP10.99□□□□□ -0.65
HFM1-208ENST00000488023 CLCN6P51797 869 aa10.94□□□□□ -0.66
HFM1-208ENST00000488023 FARP1Q9Y4F1 1045 aaPredicted RBP10.92□□□□□ -0.66
HFM1-208ENST00000488023 PABPN1Q86U42 306 aaKnown RBP eCLIP10.91□□□□□ -0.66
HFM1-208ENST00000488023 DCBLD2Q96PD2 775 aa10.9□□□□□ -0.66
HFM1-208ENST00000488023 OTUD5Q96G74 571 aa10.84□□□□□ -0.67
HFM1-208ENST00000488023 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
HFM1-208ENST00000488023 POTEMA6NI47 508 aa10.79□□□□□ -0.68
HFM1-208ENST00000488023 POTEB2H3BUK9 544 aa10.76□□□□□ -0.69
HFM1-208ENST00000488023 PCDH10Q9P2E7 1040 aa10.76□□□□□ -0.69
HFM1-208ENST00000488023 POTEGQ6S5H5 508 aa10.75□□□□□ -0.69
HFM1-208ENST00000488023 ZRANB1Q9UGI0 708 aa10.75□□□□□ -0.69
HFM1-208ENST00000488023 GALR2O43603 387 aaPredicted RBP10.73□□□□□ -0.69
HFM1-208ENST00000488023 CREBZFQ9NS37 354 aa10.62□□□□□ -0.71
HFM1-208ENST00000488023 PELP1Q8IZL8 1130 aaKnown RBP10.6□□□□□ -0.71
HFM1-208ENST00000488023 PHF12Q96QT6 1004 aa10.57□□□□□ -0.72
HFM1-208ENST00000488023 POTEJP0CG39 1038 aa10.52□□□□□ -0.73
HFM1-208ENST00000488023 LCE2DQ5TA82 110 aaPredicted RBP10.5□□□□□ -0.73
HFM1-208ENST00000488023 PAK3O75914 559 aaPredicted RBP10.49□□□□□ -0.73
HFM1-208ENST00000488023 METRNQ9UJH8 293 aa10.48□□□□□ -0.73
HFM1-208ENST00000488023 STAG3Q9UJ98 1225 aa10.46□□□□□ -0.74
HFM1-208ENST00000488023 ASTLQ6HA08 431 aaPredicted RBP10.45□□□□□ -0.74
HFM1-208ENST00000488023 C7P10643 843 aa10.44□□□□□ -0.74
HFM1-208ENST00000488023 MAMSTRQ6ZN01 415 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms