RNA–Protein interactions for RNA: ENST00000487711.5

TTC3-220, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 5

Gene TTC3, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-220ENST00000487711 AEBP2Q6ZN18 517 aaPredicted RBP21.73■■□□□ 1.07
TTC3-220ENST00000487711 CHIC1Q5VXU3 224 aa21.28■■□□□ 1
TTC3-220ENST00000487711 PHF23Q9BUL5 403 aaPredicted RBP18.7■□□□□ 0.58
TTC3-220ENST00000487711 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
TTC3-220ENST00000487711 PLPPR3Q6T4P5 718 aa17.33■□□□□ 0.36
TTC3-220ENST00000487711 FOXD1Q16676 465 aa17.11■□□□□ 0.33
TTC3-220ENST00000487711 ADRA2BP18089 450 aa16.51■□□□□ 0.23
TTC3-220ENST00000487711 PPP6R1Q9UPN7 881 aa16.5■□□□□ 0.23
TTC3-220ENST00000487711 PIAS4Q8N2W9 510 aaPredicted RBP16.18■□□□□ 0.18
TTC3-220ENST00000487711 MSH5O43196 834 aa15.78■□□□□ 0.12
TTC3-220ENST00000487711 PPP4R3CPQ6ZMV5 832 aa15.27■□□□□ 0.04
TTC3-220ENST00000487711 SCAF1Q9H7N4 1312 aaKnown RBP15.13■□□□□ 0.01
TTC3-220ENST00000487711 KCNA4P22459 653 aa14.98□□□□□ -0.01
TTC3-220ENST00000487711 MAPK8IP2Q13387 824 aaPredicted RBP14.96□□□□□ -0.01
TTC3-220ENST00000487711 NCBP3Q53F19 620 aaKnown RBP14.91□□□□□ -0.02
TTC3-220ENST00000487711 CNKSR2Q8WXI2 1034 aa14.83□□□□□ -0.04
TTC3-220ENST00000487711 DMRT2Q9Y5R5 561 aa14.73□□□□□ -0.05
TTC3-220ENST00000487711 NPM3O75607 178 aaKnown RBP14.66□□□□□ -0.06
TTC3-220ENST00000487711 RNF216Q9NWF9 866 aaPredicted RBP14.51□□□□□ -0.09
TTC3-220ENST00000487711 HOXD11P31277 338 aaPredicted RBP14.43□□□□□ -0.1
TTC3-220ENST00000487711 SLC4A1APQ9BWU0 796 aaKnown RBP14.29□□□□□ -0.12
TTC3-220ENST00000487711 POTEDQ86YR6 584 aa14.27□□□□□ -0.13
TTC3-220ENST00000487711 DCAF8L1A6NGE4 600 aa14.17□□□□□ -0.14
TTC3-220ENST00000487711 DNAJC5BQ9UF47 199 aa14.17□□□□□ -0.14
TTC3-220ENST00000487711 EHMT2Q96KQ7 1210 aa13.96□□□□□ -0.17
TTC3-220ENST00000487711 SLC4A2P04920 1241 aa13.81□□□□□ -0.2
TTC3-220ENST00000487711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.81□□□□□ -0.23e-7■■□□□ 12.8
TTC3-220ENST00000487711 FOXD4L1Q9NU39 408 aa13.77□□□□□ -0.21
TTC3-220ENST00000487711 ZBTB22O15209 634 aa13.76□□□□□ -0.21
TTC3-220ENST00000487711 CSRNP3Q8WYN3 585 aa13.73□□□□□ -0.21
TTC3-220ENST00000487711 MYCNP04198 464 aaPredicted RBP13.56□□□□□ -0.24
TTC3-220ENST00000487711 U3KPZ7 1027 aaPredicted RBP13.55□□□□□ -0.24
TTC3-220ENST00000487711 RNF39Q9H2S5 420 aa13.5□□□□□ -0.25
TTC3-220ENST00000487711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.43□□□□□ -0.26
TTC3-220ENST00000487711 HNRNPUL2Q1KMD3 747 aaKnown RBP13.43□□□□□ -0.26
TTC3-220ENST00000487711 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
TTC3-220ENST00000487711 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
TTC3-220ENST00000487711 APLP2Q06481 763 aa13.29□□□□□ -0.28
TTC3-220ENST00000487711 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
TTC3-220ENST00000487711 SPINK5Q9NQ38 1064 aaPredicted RBP13.17□□□□□ -0.3
TTC3-220ENST00000487711 ATF5Q9Y2D1 282 aaPredicted RBP13.17□□□□□ -0.3
TTC3-220ENST00000487711 CACNB1Q02641 598 aaPredicted RBP13.16□□□□□ -0.3
TTC3-220ENST00000487711 CAPN15O75808 1086 aa13.15□□□□□ -0.3
TTC3-220ENST00000487711 TRHP20396 242 aaPredicted RBP13.1□□□□□ -0.31
TTC3-220ENST00000487711 ZNF219Q9P2Y4 722 aaPredicted RBP13.09□□□□□ -0.31
TTC3-220ENST00000487711 ABCB7O75027 752 aa12.9□□□□□ -0.34
TTC3-220ENST00000487711 POLA2Q14181 598 aa12.88□□□□□ -0.35
TTC3-220ENST00000487711 DSG3P32926 999 aa12.87□□□□□ -0.35
TTC3-220ENST00000487711 ZBTB12Q9Y330 459 aaPredicted RBP12.68□□□□□ -0.38
TTC3-220ENST00000487711 FBLN2P98095 1184 aa12.67□□□□□ -0.38
TTC3-220ENST00000487711 MKRN4PQ13434 485 aaPredicted RBP12.6□□□□□ -0.39
TTC3-220ENST00000487711 FKBP8Q14318 412 aa12.45□□□□□ -0.42
TTC3-220ENST00000487711 OSCARQ8IYS5 282 aa12.45□□□□□ -0.42
TTC3-220ENST00000487711 SPDYE4A6NLX3 237 aa12.38□□□□□ -0.43
TTC3-220ENST00000487711 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
TTC3-220ENST00000487711 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
TTC3-220ENST00000487711 SPDYE2Q495Y8 402 aa12.32□□□□□ -0.44
TTC3-220ENST00000487711 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
TTC3-220ENST00000487711 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
TTC3-220ENST00000487711 SSUH2Q9Y2M2 353 aa12.22□□□□□ -0.45
TTC3-220ENST00000487711 PABPN1Q86U42 306 aaKnown RBP eCLIP12.14□□□□□ -0.47
TTC3-220ENST00000487711 AKT1S1Q96B36 256 aa12.14□□□□□ -0.47
TTC3-220ENST00000487711 PROM2Q8N271 834 aa12.12□□□□□ -0.47
TTC3-220ENST00000487711 REM2Q8IYK8 340 aaPredicted RBP12.02□□□□□ -0.49
TTC3-220ENST00000487711 FBXO3Q9UK99 471 aa12□□□□□ -0.49
TTC3-220ENST00000487711 SPDYE1Q8NFV5 336 aaPredicted RBP11.97□□□□□ -0.49
TTC3-220ENST00000487711 STAG3Q9UJ98 1225 aa11.95□□□□□ -0.5
TTC3-220ENST00000487711 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
TTC3-220ENST00000487711 PITPNM1O00562 1244 aa11.89□□□□□ -0.51
TTC3-220ENST00000487711 PRR29P0C7W0 189 aa11.82□□□□□ -0.52
TTC3-220ENST00000487711 VASPP50552 380 aaPredicted RBP11.82□□□□□ -0.52
TTC3-220ENST00000487711 CHRDL2Q6WN34 429 aa11.76□□□□□ -0.53
TTC3-220ENST00000487711 MIER1Q8N108 512 aa11.75□□□□□ -0.53
TTC3-220ENST00000487711 PLCD3Q8N3E9 789 aa11.75□□□□□ -0.53
TTC3-220ENST00000487711 PLEKHG5O94827 1062 aa11.71□□□□□ -0.53
TTC3-220ENST00000487711 CREBZFQ9NS37 354 aa11.65□□□□□ -0.54
TTC3-220ENST00000487711 FXR2P51116 673 aaKnown RBP eCLIP11.64□□□□□ -0.558e-7■■□□□ 12.9
TTC3-220ENST00000487711 IFNLR1Q8IU57 520 aaPredicted RBP11.64□□□□□ -0.55
TTC3-220ENST00000487711 KLHL34Q8N239 644 aa11.64□□□□□ -0.55
TTC3-220ENST00000487711 CHADLQ6NUI6 762 aa11.61□□□□□ -0.55
TTC3-220ENST00000487711 PIP4P2Q8N4L2 257 aa11.61□□□□□ -0.55
TTC3-220ENST00000487711 PRKAR2AP13861 404 aaKnown RBP11.6□□□□□ -0.55
TTC3-220ENST00000487711 ZBTB47Q9UFB7 747 aaPredicted RBP11.6□□□□□ -0.55
TTC3-220ENST00000487711 SPOCK2Q92563 424 aa11.52□□□□□ -0.57
TTC3-220ENST00000487711 MNX1P50219 401 aaPredicted RBP11.51□□□□□ -0.57
TTC3-220ENST00000487711 FARP1Q9Y4F1 1045 aaPredicted RBP11.5□□□□□ -0.57
TTC3-220ENST00000487711 NPM1P06748 294 aaKnown RBP eCLIP11.49□□□□□ -0.57
TTC3-220ENST00000487711 AMER1Q5JTC6 1135 aaPredicted RBP11.43□□□□□ -0.58
TTC3-220ENST00000487711 NUBP1P53384 320 aa11.4□□□□□ -0.58
TTC3-220ENST00000487711 RTN4Q9NQC3 1192 aaKnown RBP11.38□□□□□ -0.59
TTC3-220ENST00000487711 CIZ1Q9ULV3 898 aaPredicted RBP11.36□□□□□ -0.59
TTC3-220ENST00000487711 RASEFQ8IZ41 740 aa11.35□□□□□ -0.59
TTC3-220ENST00000487711 FAM212AQ96EL1 285 aa11.35□□□□□ -0.59
TTC3-220ENST00000487711 DCAF8Q5TAQ9 597 aa11.34□□□□□ -0.59
TTC3-220ENST00000487711 POTEHQ6S545 545 aa11.32□□□□□ -0.6
TTC3-220ENST00000487711 GSE1Q14687 1217 aa11.31□□□□□ -0.6
TTC3-220ENST00000487711 TSPYL2Q9H2G4 693 aaPredicted RBP11.31□□□□□ -0.6
TTC3-220ENST00000487711 PAK3O75914 559 aaPredicted RBP11.3□□□□□ -0.6
TTC3-220ENST00000487711 CD44P16070 742 aaKnown RBP11.28□□□□□ -0.6
TTC3-220ENST00000487711 HAX1O00165 279 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms