RNA–Protein interactions for RNA: ENST00000487539.1

CNN3-206, Transcript of calponin 3, humanhuman

TSL 2

Gene CNN3, Length 739 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-206ENST00000487539 AEBP2Q6ZN18 517 aaPredicted RBP27.66■■■□□ 2.02
CNN3-206ENST00000487539 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
CNN3-206ENST00000487539 SENP3Q9H4L4 574 aaPredicted RBP23.67■■□□□ 1.38
CNN3-206ENST00000487539 PHF23Q9BUL5 403 aaPredicted RBP23.3■■□□□ 1.32
CNN3-206ENST00000487539 FOXD1Q16676 465 aa22.2■■□□□ 1.14
CNN3-206ENST00000487539 POTEDQ86YR6 584 aa21.86■■□□□ 1.09
CNN3-206ENST00000487539 MSH5O43196 834 aa21.02■□□□□ 0.96
CNN3-206ENST00000487539 PIAS4Q8N2W9 510 aaPredicted RBP20.55■□□□□ 0.88
CNN3-206ENST00000487539 PPP6R1Q9UPN7 881 aa20.2■□□□□ 0.82
CNN3-206ENST00000487539 ADRA2BP18089 450 aa20.1■□□□□ 0.81
CNN3-206ENST00000487539 PLPPR3Q6T4P5 718 aa20.02■□□□□ 0.8
CNN3-206ENST00000487539 MAPK8IP2Q13387 824 aaPredicted RBP18.71■□□□□ 0.59
CNN3-206ENST00000487539 DMRT2Q9Y5R5 561 aa18.65■□□□□ 0.58
CNN3-206ENST00000487539 CACNB1Q02641 598 aaPredicted RBP18.57■□□□□ 0.56
CNN3-206ENST00000487539 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
CNN3-206ENST00000487539 DCAF8L1A6NGE4 600 aa18.02■□□□□ 0.48
CNN3-206ENST00000487539 RNF39Q9H2S5 420 aa17.88■□□□□ 0.45
CNN3-206ENST00000487539 HOXD11P31277 338 aaPredicted RBP17.66■□□□□ 0.42
CNN3-206ENST00000487539 C1QBPQ07021 282 aaKnown RBP17.57■□□□□ 0.4
CNN3-206ENST00000487539 PPP4R3CPQ6ZMV5 832 aa17.48■□□□□ 0.39
CNN3-206ENST00000487539 RNF216Q9NWF9 866 aaPredicted RBP17.32■□□□□ 0.36
CNN3-206ENST00000487539 CNKSR2Q8WXI2 1034 aa17.3■□□□□ 0.36
CNN3-206ENST00000487539 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
CNN3-206ENST00000487539 POTEHQ6S545 545 aa16.98■□□□□ 0.31
CNN3-206ENST00000487539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.89■□□□□ 0.293e-6■□□□□ 8.5
CNN3-206ENST00000487539 NCBP3Q53F19 620 aaKnown RBP16.55■□□□□ 0.24
CNN3-206ENST00000487539 DSG3P32926 999 aa16.5■□□□□ 0.23
CNN3-206ENST00000487539 CAPN15O75808 1086 aa16.45■□□□□ 0.22
CNN3-206ENST00000487539 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
CNN3-206ENST00000487539 U3KPZ7 1027 aaPredicted RBP16.41■□□□□ 0.22
CNN3-206ENST00000487539 NPM3O75607 178 aaKnown RBP16.33■□□□□ 0.2
CNN3-206ENST00000487539 ABCB7O75027 752 aa16.02■□□□□ 0.16
CNN3-206ENST00000487539 TRHP20396 242 aaPredicted RBP16.02■□□□□ 0.16
CNN3-206ENST00000487539 ZNF219Q9P2Y4 722 aaPredicted RBP15.88■□□□□ 0.13
CNN3-206ENST00000487539 APLP2Q06481 763 aa15.83■□□□□ 0.12
CNN3-206ENST00000487539 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
CNN3-206ENST00000487539 CHRDL2Q6WN34 429 aa15.73■□□□□ 0.11
CNN3-206ENST00000487539 RBM42Q9BTD8 480 aaKnown RBP15.73■□□□□ 0.11
CNN3-206ENST00000487539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.64■□□□□ 0.09
CNN3-206ENST00000487539 HNRNPUL2Q1KMD3 747 aaKnown RBP15.64■□□□□ 0.09
CNN3-206ENST00000487539 SP7Q8TDD2 431 aaPredicted RBP15.54■□□□□ 0.08
CNN3-206ENST00000487539 SAMD1Q6SPF0 538 aaPredicted RBP15.53■□□□□ 0.08
CNN3-206ENST00000487539 POLA2Q14181 598 aa15.4■□□□□ 0.06
CNN3-206ENST00000487539 KCNA4P22459 653 aa15.35■□□□□ 0.05
CNN3-206ENST00000487539 AKT1S1Q96B36 256 aa15.22■□□□□ 0.03
CNN3-206ENST00000487539 PIP4P2Q8N4L2 257 aa15.2■□□□□ 0.02
CNN3-206ENST00000487539 HAX1O00165 279 aa15.17■□□□□ 0.02
CNN3-206ENST00000487539 REM2Q8IYK8 340 aaPredicted RBP15.12■□□□□ 0.01
CNN3-206ENST00000487539 MYCNP04198 464 aaPredicted RBP15.09■□□□□ 0.01
CNN3-206ENST00000487539 FXR2P51116 673 aaKnown RBP eCLIP14.96□□□□□ -0.01
CNN3-206ENST00000487539 PITPNM1O00562 1244 aa14.95□□□□□ -0.02
CNN3-206ENST00000487539 ZBTB12Q9Y330 459 aaPredicted RBP14.95□□□□□ -0.02
CNN3-206ENST00000487539 EVX2Q03828 476 aa14.93□□□□□ -0.02
CNN3-206ENST00000487539 OSCARQ8IYS5 282 aa14.92□□□□□ -0.02
CNN3-206ENST00000487539 ATF5Q9Y2D1 282 aaPredicted RBP14.87□□□□□ -0.03
CNN3-206ENST00000487539 LHX8Q68G74 356 aa14.6□□□□□ -0.07
CNN3-206ENST00000487539 PRKAR2AP13861 404 aaKnown RBP14.58□□□□□ -0.08
CNN3-206ENST00000487539 FOXD4L1Q9NU39 408 aa14.53□□□□□ -0.08
CNN3-206ENST00000487539 GABBR2O75899 941 aa14.52□□□□□ -0.09
CNN3-206ENST00000487539 C19orf67A6NJJ6 358 aa14.51□□□□□ -0.09
CNN3-206ENST00000487539 CLEC11AQ9Y240 323 aa14.48□□□□□ -0.09
CNN3-206ENST00000487539 SPDYE2BA6NHP3 402 aa14.44□□□□□ -0.1
CNN3-206ENST00000487539 SPDYE6P0CI01 402 aa14.44□□□□□ -0.1
CNN3-206ENST00000487539 SPDYE2Q495Y8 402 aa14.44□□□□□ -0.1
CNN3-206ENST00000487539 SPDYE1Q8NFV5 336 aaPredicted RBP14.39□□□□□ -0.11
CNN3-206ENST00000487539 PLSCR2Q9NRY7 297 aa14.35□□□□□ -0.11
CNN3-206ENST00000487539 SLC4A1APQ9BWU0 796 aaKnown RBP14.33□□□□□ -0.12
CNN3-206ENST00000487539 FBLN2P98095 1184 aa14.3□□□□□ -0.12
CNN3-206ENST00000487539 CHADLQ6NUI6 762 aa14.28□□□□□ -0.12
CNN3-206ENST00000487539 POTEIP0CG38 1075 aa14.21□□□□□ -0.13
CNN3-206ENST00000487539 ZNF692Q9BU19 519 aaPredicted RBP14.2□□□□□ -0.14
CNN3-206ENST00000487539 SSUH2Q9Y2M2 353 aa14.16□□□□□ -0.14
CNN3-206ENST00000487539 ATXN8OSP0DMR3 200 aa14.13□□□□□ -0.15
CNN3-206ENST00000487539 MKRN4PQ13434 485 aaPredicted RBP14.11□□□□□ -0.15
CNN3-206ENST00000487539 ZBTB22O15209 634 aa14.1□□□□□ -0.15
CNN3-206ENST00000487539 PRR29P0C7W0 189 aa14.1□□□□□ -0.15
CNN3-206ENST00000487539 CD44P16070 742 aaKnown RBP14.06□□□□□ -0.16
CNN3-206ENST00000487539 PABPN1Q86U42 306 aaKnown RBP eCLIP13.97□□□□□ -0.17
CNN3-206ENST00000487539 DCBLD2Q96PD2 775 aa13.97□□□□□ -0.17
CNN3-206ENST00000487539 CLCN6P51797 869 aa13.95□□□□□ -0.18
CNN3-206ENST00000487539 FARP1Q9Y4F1 1045 aaPredicted RBP13.95□□□□□ -0.18
CNN3-206ENST00000487539 OTUD5Q96G74 571 aa13.83□□□□□ -0.2
CNN3-206ENST00000487539 POTEMA6NI47 508 aa13.78□□□□□ -0.2
CNN3-206ENST00000487539 ZNF579Q8NAF0 562 aaKnown RBP13.76□□□□□ -0.21
CNN3-206ENST00000487539 ZRANB1Q9UGI0 708 aa13.76□□□□□ -0.21
CNN3-206ENST00000487539 POTEB2H3BUK9 544 aa13.73□□□□□ -0.21
CNN3-206ENST00000487539 POTEGQ6S5H5 508 aa13.72□□□□□ -0.21
CNN3-206ENST00000487539 GALR2O43603 387 aaPredicted RBP13.7□□□□□ -0.22
CNN3-206ENST00000487539 CREBZFQ9NS37 354 aa13.55□□□□□ -0.24
CNN3-206ENST00000487539 PCDH10Q9P2E7 1040 aa13.55□□□□□ -0.24
CNN3-206ENST00000487539 PELP1Q8IZL8 1130 aaKnown RBP13.52□□□□□ -0.25
CNN3-206ENST00000487539 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
CNN3-206ENST00000487539 PAK3O75914 559 aaPredicted RBP13.45□□□□□ -0.26
CNN3-206ENST00000487539 POTEJP0CG39 1038 aa13.41□□□□□ -0.26
CNN3-206ENST00000487539 METRNQ9UJH8 293 aa13.39□□□□□ -0.27
CNN3-206ENST00000487539 FAM163AQ96GL9 167 aaPredicted RBP13.38□□□□□ -0.27
CNN3-206ENST00000487539 STAG3Q9UJ98 1225 aa13.38□□□□□ -0.27
CNN3-206ENST00000487539 LCE2DQ5TA82 110 aaPredicted RBP13.35□□□□□ -0.27
CNN3-206ENST00000487539 C7P10643 843 aa13.33□□□□□ -0.28
CNN3-206ENST00000487539 ASTLQ6HA08 431 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms