RNA–Protein interactions for RNA: ENST00000485024.1

VPS8-223, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 2

Gene VPS8, Length 477 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-223ENST00000485024 AEBP2Q6ZN18 517 aaPredicted RBP32.51■■■□□ 2.79
VPS8-223ENST00000485024 CHIC1Q5VXU3 224 aa30.22■■■□□ 2.43
VPS8-223ENST00000485024 SENP3Q9H4L4 574 aaPredicted RBP27.72■■■□□ 2.03
VPS8-223ENST00000485024 PHF23Q9BUL5 403 aaPredicted RBP27.29■■□□□ 1.96
VPS8-223ENST00000485024 FOXD1Q16676 465 aa26.01■■□□□ 1.75
VPS8-223ENST00000485024 POTEDQ86YR6 584 aa25.31■■□□□ 1.64
VPS8-223ENST00000485024 MSH5O43196 834 aa24.53■■□□□ 1.52
VPS8-223ENST00000485024 PIAS4Q8N2W9 510 aaPredicted RBP24.08■■□□□ 1.45
VPS8-223ENST00000485024 PPP6R1Q9UPN7 881 aa23.78■■□□□ 1.4
VPS8-223ENST00000485024 ADRA2BP18089 450 aa23.63■■□□□ 1.37
VPS8-223ENST00000485024 PLPPR3Q6T4P5 718 aa23.62■■□□□ 1.37
VPS8-223ENST00000485024 MAPK8IP2Q13387 824 aaPredicted RBP21.96■■□□□ 1.11
VPS8-223ENST00000485024 DMRT2Q9Y5R5 561 aa21.9■■□□□ 1.1
VPS8-223ENST00000485024 CACNB1Q02641 598 aaPredicted RBP21.53■■□□□ 1.04
VPS8-223ENST00000485024 SCAF1Q9H7N4 1312 aaKnown RBP21.46■■□□□ 1.03
VPS8-223ENST00000485024 DCAF8L1A6NGE4 600 aa21.01■□□□□ 0.95
VPS8-223ENST00000485024 RNF39Q9H2S5 420 aa20.93■□□□□ 0.94
VPS8-223ENST00000485024 HOXD11P31277 338 aaPredicted RBP20.79■□□□□ 0.92
VPS8-223ENST00000485024 PPP4R3CPQ6ZMV5 832 aa20.65■□□□□ 0.9
VPS8-223ENST00000485024 C1QBPQ07021 282 aaKnown RBP20.51■□□□□ 0.87
VPS8-223ENST00000485024 RNF216Q9NWF9 866 aaPredicted RBP20.41■□□□□ 0.86
VPS8-223ENST00000485024 CNKSR2Q8WXI2 1034 aa20.39■□□□□ 0.85
VPS8-223ENST00000485024 DNAJC5BQ9UF47 199 aa20.16■□□□□ 0.82
VPS8-223ENST00000485024 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.77■□□□□ 0.76
VPS8-223ENST00000485024 POTEHQ6S545 545 aa19.66■□□□□ 0.74
VPS8-223ENST00000485024 NCBP3Q53F19 620 aaKnown RBP19.53■□□□□ 0.72
VPS8-223ENST00000485024 NPM3O75607 178 aaKnown RBP19.37■□□□□ 0.69
VPS8-223ENST00000485024 DSG3P32926 999 aa19.35■□□□□ 0.69
VPS8-223ENST00000485024 U3KPZ7 1027 aaPredicted RBP19.35■□□□□ 0.69
VPS8-223ENST00000485024 SPINK5Q9NQ38 1064 aaPredicted RBP19.31■□□□□ 0.68
VPS8-223ENST00000485024 CAPN15O75808 1086 aa19.24■□□□□ 0.67
VPS8-223ENST00000485024 ABCB7O75027 752 aa18.79■□□□□ 0.6
VPS8-223ENST00000485024 TRHP20396 242 aaPredicted RBP18.76■□□□□ 0.59
VPS8-223ENST00000485024 SLC4A2P04920 1241 aa18.73■□□□□ 0.59
VPS8-223ENST00000485024 ZNF219Q9P2Y4 722 aaPredicted RBP18.65■□□□□ 0.58
VPS8-223ENST00000485024 APLP2Q06481 763 aa18.55■□□□□ 0.56
VPS8-223ENST00000485024 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.39■□□□□ 0.53
VPS8-223ENST00000485024 HNRNPUL2Q1KMD3 747 aaKnown RBP18.39■□□□□ 0.53
VPS8-223ENST00000485024 RBM42Q9BTD8 480 aaKnown RBP18.38■□□□□ 0.53
VPS8-223ENST00000485024 KCNA4P22459 653 aa18.35■□□□□ 0.53
VPS8-223ENST00000485024 CHRDL2Q6WN34 429 aa18.35■□□□□ 0.53
VPS8-223ENST00000485024 SAMD1Q6SPF0 538 aaPredicted RBP18.29■□□□□ 0.52
VPS8-223ENST00000485024 POLA2Q14181 598 aa18.09■□□□□ 0.49
VPS8-223ENST00000485024 SP7Q8TDD2 431 aaPredicted RBP18.07■□□□□ 0.48
VPS8-223ENST00000485024 MYCNP04198 464 aaPredicted RBP17.87■□□□□ 0.45
VPS8-223ENST00000485024 AKT1S1Q96B36 256 aa17.83■□□□□ 0.44
VPS8-223ENST00000485024 PIP4P2Q8N4L2 257 aa17.78■□□□□ 0.44
VPS8-223ENST00000485024 REM2Q8IYK8 340 aaPredicted RBP17.71■□□□□ 0.43
VPS8-223ENST00000485024 ATF5Q9Y2D1 282 aaPredicted RBP17.64■□□□□ 0.41
VPS8-223ENST00000485024 HAX1O00165 279 aa17.61■□□□□ 0.41
VPS8-223ENST00000485024 OSCARQ8IYS5 282 aa17.59■□□□□ 0.41
VPS8-223ENST00000485024 ZBTB12Q9Y330 459 aaPredicted RBP17.58■□□□□ 0.4
VPS8-223ENST00000485024 PITPNM1O00562 1244 aa17.56■□□□□ 0.4
VPS8-223ENST00000485024 FXR2P51116 673 aaKnown RBP eCLIP17.54■□□□□ 0.4
VPS8-223ENST00000485024 EVX2Q03828 476 aa17.45■□□□□ 0.38
VPS8-223ENST00000485024 FOXD4L1Q9NU39 408 aa17.3■□□□□ 0.36
VPS8-223ENST00000485024 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
VPS8-223ENST00000485024 PRKAR2AP13861 404 aaKnown RBP17.06■□□□□ 0.32
VPS8-223ENST00000485024 SPDYE2BA6NHP3 402 aa17.02■□□□□ 0.32
VPS8-223ENST00000485024 SPDYE6P0CI01 402 aa17.02■□□□□ 0.32
VPS8-223ENST00000485024 SPDYE2Q495Y8 402 aa17.02■□□□□ 0.32
VPS8-223ENST00000485024 C19orf67A6NJJ6 358 aa17.01■□□□□ 0.31
VPS8-223ENST00000485024 GABBR2O75899 941 aa16.94■□□□□ 0.3
VPS8-223ENST00000485024 CLEC11AQ9Y240 323 aa16.94■□□□□ 0.3
VPS8-223ENST00000485024 LHX8Q68G74 356 aa16.93■□□□□ 0.3
VPS8-223ENST00000485024 ZBTB22O15209 634 aa16.92■□□□□ 0.3
VPS8-223ENST00000485024 SPDYE1Q8NFV5 336 aaPredicted RBP16.9■□□□□ 0.3
VPS8-223ENST00000485024 FBLN2P98095 1184 aa16.85■□□□□ 0.29
VPS8-223ENST00000485024 ATXN8OSP0DMR3 200 aa16.79■□□□□ 0.28
VPS8-223ENST00000485024 MKRN4PQ13434 485 aaPredicted RBP16.78■□□□□ 0.28
VPS8-223ENST00000485024 SSUH2Q9Y2M2 353 aa16.77■□□□□ 0.28
VPS8-223ENST00000485024 CHADLQ6NUI6 762 aa16.76■□□□□ 0.27
VPS8-223ENST00000485024 ZNF692Q9BU19 519 aaPredicted RBP16.7■□□□□ 0.26
VPS8-223ENST00000485024 POTEIP0CG38 1075 aa16.64■□□□□ 0.25
VPS8-223ENST00000485024 PRR29P0C7W0 189 aa16.52■□□□□ 0.24
VPS8-223ENST00000485024 CD44P16070 742 aaKnown RBP16.47■□□□□ 0.23
VPS8-223ENST00000485024 PLSCR2Q9NRY7 297 aa16.47■□□□□ 0.23
VPS8-223ENST00000485024 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS8-223ENST00000485024 FARP1Q9Y4F1 1045 aaPredicted RBP16.39■□□□□ 0.21
VPS8-223ENST00000485024 CLCN6P51797 869 aa16.27■□□□□ 0.2
VPS8-223ENST00000485024 DCBLD2Q96PD2 775 aa16.26■□□□□ 0.19
VPS8-223ENST00000485024 ZNF579Q8NAF0 562 aaKnown RBP16.19■□□□□ 0.18
VPS8-223ENST00000485024 OTUD5Q96G74 571 aa16.14■□□□□ 0.17
VPS8-223ENST00000485024 ZRANB1Q9UGI0 708 aa16.12■□□□□ 0.17
VPS8-223ENST00000485024 GALR2O43603 387 aaPredicted RBP16.09■□□□□ 0.17
VPS8-223ENST00000485024 POTEB2H3BUK9 544 aa16.08■□□□□ 0.16
VPS8-223ENST00000485024 CREBZFQ9NS37 354 aa16.02■□□□□ 0.16
VPS8-223ENST00000485024 POTEMA6NI47 508 aa15.99■□□□□ 0.15
VPS8-223ENST00000485024 POTEGQ6S5H5 508 aa15.92■□□□□ 0.14
VPS8-223ENST00000485024 PHF12Q96QT6 1004 aa15.89■□□□□ 0.13
VPS8-223ENST00000485024 PELP1Q8IZL8 1130 aaKnown RBP15.87■□□□□ 0.13
VPS8-223ENST00000485024 STAG3Q9UJ98 1225 aa15.76■□□□□ 0.11
VPS8-223ENST00000485024 PAK3O75914 559 aaPredicted RBP15.74■□□□□ 0.11
VPS8-223ENST00000485024 POTEJP0CG39 1038 aa15.74■□□□□ 0.11
VPS8-223ENST00000485024 METRNQ9UJH8 293 aa15.7■□□□□ 0.1
VPS8-223ENST00000485024 MNX1P50219 401 aaPredicted RBP15.67■□□□□ 0.1
VPS8-223ENST00000485024 LCE2DQ5TA82 110 aaPredicted RBP15.67■□□□□ 0.1
VPS8-223ENST00000485024 ASTLQ6HA08 431 aaPredicted RBP15.67■□□□□ 0.1
VPS8-223ENST00000485024 PCDH10Q9P2E7 1040 aa15.66■□□□□ 0.1
VPS8-223ENST00000485024 MS4A3Q96HJ5 214 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms