RNA–Protein interactions for RNA: ENST00000484645.1

RAPGEF4-212, Transcript of Rap guanine nucleotide exchange factor 4, humanhuman

TSL 3

Gene RAPGEF4, Length 842 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF4-212ENST00000484645 AEBP2Q6ZN18 517 aaPredicted RBP28.83■■■□□ 2.21
RAPGEF4-212ENST00000484645 CHIC1Q5VXU3 224 aa28.04■■■□□ 2.08
RAPGEF4-212ENST00000484645 PHF23Q9BUL5 403 aaPredicted RBP24.6■■□□□ 1.53
RAPGEF4-212ENST00000484645 SENP3Q9H4L4 574 aaPredicted RBP24.58■■□□□ 1.53
RAPGEF4-212ENST00000484645 FOXD1Q16676 465 aa22.78■■□□□ 1.24
RAPGEF4-212ENST00000484645 PLPPR3Q6T4P5 718 aa22.74■■□□□ 1.23
RAPGEF4-212ENST00000484645 PPP6R1Q9UPN7 881 aa21.76■■□□□ 1.07
RAPGEF4-212ENST00000484645 ADRA2BP18089 450 aa21.75■■□□□ 1.07
RAPGEF4-212ENST00000484645 PIAS4Q8N2W9 510 aaPredicted RBP21.48■■□□□ 1.03
RAPGEF4-212ENST00000484645 MSH5O43196 834 aa21.15■□□□□ 0.98
RAPGEF4-212ENST00000484645 SCAF1Q9H7N4 1312 aaKnown RBP20■□□□□ 0.79
RAPGEF4-212ENST00000484645 PPP4R3CPQ6ZMV5 832 aa19.98■□□□□ 0.79
RAPGEF4-212ENST00000484645 MAPK8IP2Q13387 824 aaPredicted RBP19.77■□□□□ 0.76
RAPGEF4-212ENST00000484645 DMRT2Q9Y5R5 561 aa19.57■□□□□ 0.72
RAPGEF4-212ENST00000484645 POTEDQ86YR6 584 aa19.5■□□□□ 0.71
RAPGEF4-212ENST00000484645 CNKSR2Q8WXI2 1034 aa19.49■□□□□ 0.71
RAPGEF4-212ENST00000484645 NCBP3Q53F19 620 aaKnown RBP19.47■□□□□ 0.71
RAPGEF4-212ENST00000484645 KCNA4P22459 653 aa19.3■□□□□ 0.68
RAPGEF4-212ENST00000484645 RNF216Q9NWF9 866 aaPredicted RBP19.14■□□□□ 0.65
RAPGEF4-212ENST00000484645 NPM3O75607 178 aaKnown RBP19.11■□□□□ 0.65
RAPGEF4-212ENST00000484645 HOXD11P31277 338 aaPredicted RBP19.09■□□□□ 0.65
RAPGEF4-212ENST00000484645 DCAF8L1A6NGE4 600 aa18.77■□□□□ 0.6
RAPGEF4-212ENST00000484645 DNAJC5BQ9UF47 199 aa18.6■□□□□ 0.57
RAPGEF4-212ENST00000484645 SLC4A1APQ9BWU0 796 aaKnown RBP18.39■□□□□ 0.53
RAPGEF4-212ENST00000484645 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.23■□□□□ 0.51
RAPGEF4-212ENST00000484645 SLC4A2P04920 1241 aa18.06■□□□□ 0.48
RAPGEF4-212ENST00000484645 RNF39Q9H2S5 420 aa18.06■□□□□ 0.48
RAPGEF4-212ENST00000484645 C1QBPQ07021 282 aaKnown RBP17.87■□□□□ 0.45
RAPGEF4-212ENST00000484645 FOXD4L1Q9NU39 408 aa17.86■□□□□ 0.45
RAPGEF4-212ENST00000484645 U3KPZ7 1027 aaPredicted RBP17.86■□□□□ 0.45
RAPGEF4-212ENST00000484645 CACNB1Q02641 598 aaPredicted RBP17.75■□□□□ 0.43
RAPGEF4-212ENST00000484645 ZBTB22O15209 634 aa17.71■□□□□ 0.43
RAPGEF4-212ENST00000484645 MYCNP04198 464 aaPredicted RBP17.71■□□□□ 0.43
RAPGEF4-212ENST00000484645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.68■□□□□ 0.42
RAPGEF4-212ENST00000484645 HNRNPUL2Q1KMD3 747 aaKnown RBP17.68■□□□□ 0.42
RAPGEF4-212ENST00000484645 EHMT2Q96KQ7 1210 aa17.64■□□□□ 0.41
RAPGEF4-212ENST00000484645 SAMD1Q6SPF0 538 aaPredicted RBP17.58■□□□□ 0.4
RAPGEF4-212ENST00000484645 APLP2Q06481 763 aa17.56■□□□□ 0.4
RAPGEF4-212ENST00000484645 CSRNP3Q8WYN3 585 aa17.5■□□□□ 0.39
RAPGEF4-212ENST00000484645 CAPN15O75808 1086 aa17.41■□□□□ 0.38
RAPGEF4-212ENST00000484645 SPINK5Q9NQ38 1064 aaPredicted RBP17.41■□□□□ 0.38
RAPGEF4-212ENST00000484645 ZNF219Q9P2Y4 722 aaPredicted RBP17.3■□□□□ 0.36
RAPGEF4-212ENST00000484645 TRHP20396 242 aaPredicted RBP17.27■□□□□ 0.36
RAPGEF4-212ENST00000484645 ATXN8OSP0DMR3 200 aa17.26■□□□□ 0.35
RAPGEF4-212ENST00000484645 ATF5Q9Y2D1 282 aaPredicted RBP17.17■□□□□ 0.34
RAPGEF4-212ENST00000484645 DSG3P32926 999 aa17.12■□□□□ 0.33
RAPGEF4-212ENST00000484645 ABCB7O75027 752 aa17.03■□□□□ 0.32
RAPGEF4-212ENST00000484645 POLA2Q14181 598 aa16.94■□□□□ 0.3
RAPGEF4-212ENST00000484645 ZBTB12Q9Y330 459 aaPredicted RBP16.71■□□□□ 0.27
RAPGEF4-212ENST00000484645 FBLN2P98095 1184 aa16.56■□□□□ 0.24
RAPGEF4-212ENST00000484645 MKRN4PQ13434 485 aaPredicted RBP16.42■□□□□ 0.22
RAPGEF4-212ENST00000484645 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
RAPGEF4-212ENST00000484645 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
RAPGEF4-212ENST00000484645 SPDYE2BA6NHP3 402 aa16.22■□□□□ 0.19
RAPGEF4-212ENST00000484645 SPDYE6P0CI01 402 aa16.22■□□□□ 0.19
RAPGEF4-212ENST00000484645 SPDYE2Q495Y8 402 aa16.22■□□□□ 0.19
RAPGEF4-212ENST00000484645 ZNF692Q9BU19 519 aaPredicted RBP16.13■□□□□ 0.17
RAPGEF4-212ENST00000484645 AKT1S1Q96B36 256 aa16.12■□□□□ 0.17
RAPGEF4-212ENST00000484645 SSUH2Q9Y2M2 353 aa16.04■□□□□ 0.16
RAPGEF4-212ENST00000484645 SPDYE4A6NLX3 237 aa16.03■□□□□ 0.16
RAPGEF4-212ENST00000484645 REM2Q8IYK8 340 aaPredicted RBP15.94■□□□□ 0.14
RAPGEF4-212ENST00000484645 PABPN1Q86U42 306 aaKnown RBP eCLIP15.89■□□□□ 0.13
RAPGEF4-212ENST00000484645 FKBP8Q14318 412 aa15.87■□□□□ 0.13
RAPGEF4-212ENST00000484645 SPDYE1Q8NFV5 336 aaPredicted RBP15.79■□□□□ 0.12
RAPGEF4-212ENST00000484645 PITPNM1O00562 1244 aa15.75■□□□□ 0.11
RAPGEF4-212ENST00000484645 CHRDL2Q6WN34 429 aa15.73■□□□□ 0.11
RAPGEF4-212ENST00000484645 CLEC11AQ9Y240 323 aa15.72■□□□□ 0.11
RAPGEF4-212ENST00000484645 PROM2Q8N271 834 aa15.7■□□□□ 0.1
RAPGEF4-212ENST00000484645 STAG3Q9UJ98 1225 aa15.65■□□□□ 0.1
RAPGEF4-212ENST00000484645 PRR29P0C7W0 189 aa15.56■□□□□ 0.08
RAPGEF4-212ENST00000484645 FXR2P51116 673 aaKnown RBP eCLIP15.49■□□□□ 0.07
RAPGEF4-212ENST00000484645 PIP4P2Q8N4L2 257 aa15.48■□□□□ 0.07
RAPGEF4-212ENST00000484645 POTEHQ6S545 545 aa15.44■□□□□ 0.06
RAPGEF4-212ENST00000484645 FBXO3Q9UK99 471 aa15.41■□□□□ 0.06
RAPGEF4-212ENST00000484645 PRKAR2AP13861 404 aaKnown RBP15.37■□□□□ 0.05
RAPGEF4-212ENST00000484645 CHADLQ6NUI6 762 aa15.31■□□□□ 0.04
RAPGEF4-212ENST00000484645 CREBZFQ9NS37 354 aa15.28■□□□□ 0.04
RAPGEF4-212ENST00000484645 PLEKHG5O94827 1062 aa15.24■□□□□ 0.03
RAPGEF4-212ENST00000484645 MIER1Q8N108 512 aa15.24■□□□□ 0.03
RAPGEF4-212ENST00000484645 PLCD3Q8N3E9 789 aa15.21■□□□□ 0.03
RAPGEF4-212ENST00000484645 FARP1Q9Y4F1 1045 aaPredicted RBP15.17■□□□□ 0.02
RAPGEF4-212ENST00000484645 VASPP50552 380 aaPredicted RBP15.15■□□□□ 0.02
RAPGEF4-212ENST00000484645 NPM1P06748 294 aaKnown RBP eCLIP15.09■□□□□ 0.01
RAPGEF4-212ENST00000484645 ZBTB47Q9UFB7 747 aaPredicted RBP15.09■□□□□ 0.01
RAPGEF4-212ENST00000484645 MNX1P50219 401 aaPredicted RBP15.07■□□□□ 0
RAPGEF4-212ENST00000484645 HAX1O00165 279 aa15.06■□□□□ 0
RAPGEF4-212ENST00000484645 C19orf67A6NJJ6 358 aa14.97□□□□□ -0.01
RAPGEF4-212ENST00000484645 KLHL34Q8N239 644 aa14.97□□□□□ -0.01
RAPGEF4-212ENST00000484645 CD44P16070 742 aaKnown RBP14.93□□□□□ -0.02
RAPGEF4-212ENST00000484645 IFNLR1Q8IU57 520 aaPredicted RBP14.9□□□□□ -0.02
RAPGEF4-212ENST00000484645 PAK3O75914 559 aaPredicted RBP14.89□□□□□ -0.03
RAPGEF4-212ENST00000484645 EVX2Q03828 476 aa14.84□□□□□ -0.03
RAPGEF4-212ENST00000484645 NUBP1P53384 320 aa14.82□□□□□ -0.04
RAPGEF4-212ENST00000484645 ZRANB1Q9UGI0 708 aa14.82□□□□□ -0.04
RAPGEF4-212ENST00000484645 RASEFQ8IZ41 740 aa14.8□□□□□ -0.04
RAPGEF4-212ENST00000484645 SPOCK2Q92563 424 aa14.8□□□□□ -0.04
RAPGEF4-212ENST00000484645 TSPYL2Q9H2G4 693 aaPredicted RBP14.79□□□□□ -0.04
RAPGEF4-212ENST00000484645 SP7Q8TDD2 431 aaPredicted RBP14.77□□□□□ -0.05
RAPGEF4-212ENST00000484645 FAM212AQ96EL1 285 aa14.77□□□□□ -0.05
RAPGEF4-212ENST00000484645 ZNF579Q8NAF0 562 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms