RNA–Protein interactions for RNA: ENST00000484441.1

CCDC66-219, Transcript of coiled-coil domain containing 66, humanhuman

TSL 1 (best)

Gene CCDC66, Length 302 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-219ENST00000484441 AEBP2Q6ZN18 517 aaPredicted RBP29.57■■■□□ 2.32
CCDC66-219ENST00000484441 CHIC1Q5VXU3 224 aa28.74■■■□□ 2.19
CCDC66-219ENST00000484441 PHF23Q9BUL5 403 aaPredicted RBP25.25■■□□□ 1.63
CCDC66-219ENST00000484441 SENP3Q9H4L4 574 aaPredicted RBP25.1■■□□□ 1.61
CCDC66-219ENST00000484441 FOXD1Q16676 465 aa23.3■■□□□ 1.32
CCDC66-219ENST00000484441 PLPPR3Q6T4P5 718 aa23.24■■□□□ 1.31
CCDC66-219ENST00000484441 PPP6R1Q9UPN7 881 aa22.31■■□□□ 1.16
CCDC66-219ENST00000484441 ADRA2BP18089 450 aa22.23■■□□□ 1.15
CCDC66-219ENST00000484441 PIAS4Q8N2W9 510 aaPredicted RBP21.9■■□□□ 1.1
CCDC66-219ENST00000484441 MSH5O43196 834 aa21.55■■□□□ 1.04
CCDC66-219ENST00000484441 PPP4R3CPQ6ZMV5 832 aa20.44■□□□□ 0.86
CCDC66-219ENST00000484441 SCAF1Q9H7N4 1312 aaKnown RBP20.34■□□□□ 0.85
CCDC66-219ENST00000484441 MAPK8IP2Q13387 824 aaPredicted RBP20.2■□□□□ 0.82
CCDC66-219ENST00000484441 DMRT2Q9Y5R5 561 aa20.03■□□□□ 0.8
CCDC66-219ENST00000484441 CNKSR2Q8WXI2 1034 aa19.92■□□□□ 0.78
CCDC66-219ENST00000484441 POTEDQ86YR6 584 aa19.88■□□□□ 0.77
CCDC66-219ENST00000484441 NCBP3Q53F19 620 aaKnown RBP19.84■□□□□ 0.77
CCDC66-219ENST00000484441 KCNA4P22459 653 aa19.8■□□□□ 0.76
CCDC66-219ENST00000484441 NPM3O75607 178 aaKnown RBP19.59■□□□□ 0.73
CCDC66-219ENST00000484441 RNF216Q9NWF9 866 aaPredicted RBP19.59■□□□□ 0.73
CCDC66-219ENST00000484441 HOXD11P31277 338 aaPredicted RBP19.58■□□□□ 0.72
CCDC66-219ENST00000484441 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
CCDC66-219ENST00000484441 DCAF8L1A6NGE4 600 aa18.99■□□□□ 0.63
CCDC66-219ENST00000484441 SLC4A1APQ9BWU0 796 aaKnown RBP18.8■□□□□ 0.6
CCDC66-219ENST00000484441 SLC4A2P04920 1241 aa18.56■□□□□ 0.56
CCDC66-219ENST00000484441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.53■□□□□ 0.56
CCDC66-219ENST00000484441 RNF39Q9H2S5 420 aa18.48■□□□□ 0.55
CCDC66-219ENST00000484441 U3KPZ7 1027 aaPredicted RBP18.3■□□□□ 0.52
CCDC66-219ENST00000484441 FOXD4L1Q9NU39 408 aa18.28■□□□□ 0.52
CCDC66-219ENST00000484441 ZBTB22O15209 634 aa18.25■□□□□ 0.51
CCDC66-219ENST00000484441 C1QBPQ07021 282 aaKnown RBP18.24■□□□□ 0.51
CCDC66-219ENST00000484441 MYCNP04198 464 aaPredicted RBP18.11■□□□□ 0.49
CCDC66-219ENST00000484441 EHMT2Q96KQ7 1210 aa18.02■□□□□ 0.48
CCDC66-219ENST00000484441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
CCDC66-219ENST00000484441 CACNB1Q02641 598 aaPredicted RBP18■□□□□ 0.47
CCDC66-219ENST00000484441 HNRNPUL2Q1KMD3 747 aaKnown RBP18■□□□□ 0.47
CCDC66-219ENST00000484441 CSRNP3Q8WYN3 585 aa18■□□□□ 0.47
CCDC66-219ENST00000484441 SAMD1Q6SPF0 538 aaPredicted RBP17.93■□□□□ 0.46
CCDC66-219ENST00000484441 APLP2Q06481 763 aa17.83■□□□□ 0.44
CCDC66-219ENST00000484441 SPINK5Q9NQ38 1064 aaPredicted RBP17.79■□□□□ 0.44
CCDC66-219ENST00000484441 ATXN8OSP0DMR3 200 aa17.69■□□□□ 0.42
CCDC66-219ENST00000484441 CAPN15O75808 1086 aa17.67■□□□□ 0.42
CCDC66-219ENST00000484441 ZNF219Q9P2Y4 722 aaPredicted RBP17.63■□□□□ 0.41
CCDC66-219ENST00000484441 ATF5Q9Y2D1 282 aaPredicted RBP17.62■□□□□ 0.41
CCDC66-219ENST00000484441 TRHP20396 242 aaPredicted RBP17.55■□□□□ 0.4
CCDC66-219ENST00000484441 DSG3P32926 999 aa17.52■□□□□ 0.4
CCDC66-219ENST00000484441 ABCB7O75027 752 aa17.33■□□□□ 0.36
CCDC66-219ENST00000484441 POLA2Q14181 598 aa17.27■□□□□ 0.36
CCDC66-219ENST00000484441 ZBTB12Q9Y330 459 aaPredicted RBP17.02■□□□□ 0.32
CCDC66-219ENST00000484441 MKRN4PQ13434 485 aaPredicted RBP16.87■□□□□ 0.29
CCDC66-219ENST00000484441 FBLN2P98095 1184 aa16.84■□□□□ 0.29
CCDC66-219ENST00000484441 OSCARQ8IYS5 282 aa16.72■□□□□ 0.27
CCDC66-219ENST00000484441 RBM42Q9BTD8 480 aaKnown RBP16.68■□□□□ 0.26
CCDC66-219ENST00000484441 SPDYE2BA6NHP3 402 aa16.57■□□□□ 0.24
CCDC66-219ENST00000484441 SPDYE6P0CI01 402 aa16.57■□□□□ 0.24
CCDC66-219ENST00000484441 SPDYE2Q495Y8 402 aa16.57■□□□□ 0.24
CCDC66-219ENST00000484441 SSUH2Q9Y2M2 353 aa16.46■□□□□ 0.23
CCDC66-219ENST00000484441 AKT1S1Q96B36 256 aa16.45■□□□□ 0.22
CCDC66-219ENST00000484441 ZNF692Q9BU19 519 aaPredicted RBP16.41■□□□□ 0.22
CCDC66-219ENST00000484441 SPDYE4A6NLX3 237 aa16.37■□□□□ 0.21
CCDC66-219ENST00000484441 REM2Q8IYK8 340 aaPredicted RBP16.27■□□□□ 0.2
CCDC66-219ENST00000484441 FKBP8Q14318 412 aa16.22■□□□□ 0.19
CCDC66-219ENST00000484441 PROM2Q8N271 834 aa16.21■□□□□ 0.19
CCDC66-219ENST00000484441 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
CCDC66-219ENST00000484441 PITPNM1O00562 1244 aa16.09■□□□□ 0.17
CCDC66-219ENST00000484441 SPDYE1Q8NFV5 336 aaPredicted RBP16.08■□□□□ 0.16
CCDC66-219ENST00000484441 CHRDL2Q6WN34 429 aa16.03■□□□□ 0.16
CCDC66-219ENST00000484441 CLEC11AQ9Y240 323 aa15.93■□□□□ 0.14
CCDC66-219ENST00000484441 STAG3Q9UJ98 1225 aa15.92■□□□□ 0.14
CCDC66-219ENST00000484441 FXR2P51116 673 aaKnown RBP eCLIP15.86■□□□□ 0.13
CCDC66-219ENST00000484441 PRR29P0C7W0 189 aa15.81■□□□□ 0.12
CCDC66-219ENST00000484441 PIP4P2Q8N4L2 257 aa15.8■□□□□ 0.12
CCDC66-219ENST00000484441 FBXO3Q9UK99 471 aa15.71■□□□□ 0.11
CCDC66-219ENST00000484441 POTEHQ6S545 545 aa15.7■□□□□ 0.1
CCDC66-219ENST00000484441 PRKAR2AP13861 404 aaKnown RBP15.65■□□□□ 0.1
CCDC66-219ENST00000484441 CREBZFQ9NS37 354 aa15.64■□□□□ 0.09
CCDC66-219ENST00000484441 CHADLQ6NUI6 762 aa15.6■□□□□ 0.09
CCDC66-219ENST00000484441 VASPP50552 380 aaPredicted RBP15.52■□□□□ 0.08
CCDC66-219ENST00000484441 MNX1P50219 401 aaPredicted RBP15.51■□□□□ 0.07
CCDC66-219ENST00000484441 FARP1Q9Y4F1 1045 aaPredicted RBP15.48■□□□□ 0.07
CCDC66-219ENST00000484441 MIER1Q8N108 512 aa15.47■□□□□ 0.07
CCDC66-219ENST00000484441 PLCD3Q8N3E9 789 aa15.44■□□□□ 0.06
CCDC66-219ENST00000484441 PLEKHG5O94827 1062 aa15.41■□□□□ 0.06
CCDC66-219ENST00000484441 ZBTB47Q9UFB7 747 aaPredicted RBP15.34■□□□□ 0.05
CCDC66-219ENST00000484441 NPM1P06748 294 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC66-219ENST00000484441 C19orf67A6NJJ6 358 aa15.31■□□□□ 0.04
CCDC66-219ENST00000484441 IFNLR1Q8IU57 520 aaPredicted RBP15.3■□□□□ 0.04
CCDC66-219ENST00000484441 HAX1O00165 279 aa15.25■□□□□ 0.03
CCDC66-219ENST00000484441 CD44P16070 742 aaKnown RBP15.2■□□□□ 0.02
CCDC66-219ENST00000484441 NUBP1P53384 320 aa15.2■□□□□ 0.02
CCDC66-219ENST00000484441 EVX2Q03828 476 aa15.19■□□□□ 0.02
CCDC66-219ENST00000484441 KLHL34Q8N239 644 aa15.17■□□□□ 0.02
CCDC66-219ENST00000484441 RASEFQ8IZ41 740 aa15.14■□□□□ 0.01
CCDC66-219ENST00000484441 SPOCK2Q92563 424 aa15.11■□□□□ 0.01
CCDC66-219ENST00000484441 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
CCDC66-219ENST00000484441 ZNF579Q8NAF0 562 aaKnown RBP15.07■□□□□ 0
CCDC66-219ENST00000484441 ZRANB1Q9UGI0 708 aa15.07■□□□□ 0
CCDC66-219ENST00000484441 SP7Q8TDD2 431 aaPredicted RBP15.05■□□□□ -0
CCDC66-219ENST00000484441 FAM212AQ96EL1 285 aa15.03■□□□□ -0
CCDC66-219ENST00000484441 TSPYL2Q9H2G4 693 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms