RNA–Protein interactions for RNA: ENST00000481522.1

COPA-204, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 578 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-204ENST00000481522 AEBP2Q6ZN18 517 aaPredicted RBP30.27■■■□□ 2.44
COPA-204ENST00000481522 CHIC1Q5VXU3 224 aa28.09■■■□□ 2.09
COPA-204ENST00000481522 SENP3Q9H4L4 574 aaPredicted RBP25.9■■□□□ 1.74
COPA-204ENST00000481522 PHF23Q9BUL5 403 aaPredicted RBP25.39■■□□□ 1.66
COPA-204ENST00000481522 POTEDQ86YR6 584 aa25.05■■□□□ 1.6
COPA-204ENST00000481522 FOXD1Q16676 465 aa24.37■■□□□ 1.49
COPA-204ENST00000481522 MSH5O43196 834 aa23.24■■□□□ 1.31
COPA-204ENST00000481522 PIAS4Q8N2W9 510 aaPredicted RBP22.38■■□□□ 1.17
COPA-204ENST00000481522 PPP6R1Q9UPN7 881 aa21.78■■□□□ 1.08
COPA-204ENST00000481522 ADRA2BP18089 450 aa21.58■■□□□ 1.05
COPA-204ENST00000481522 PLPPR3Q6T4P5 718 aa21.19■□□□□ 0.98
COPA-204ENST00000481522 CACNB1Q02641 598 aaPredicted RBP20.73■□□□□ 0.91
COPA-204ENST00000481522 DMRT2Q9Y5R5 561 aa20.38■□□□□ 0.85
COPA-204ENST00000481522 MAPK8IP2Q13387 824 aaPredicted RBP20.25■□□□□ 0.83
COPA-204ENST00000481522 RNF39Q9H2S5 420 aa19.77■□□□□ 0.76
COPA-204ENST00000481522 SCAF1Q9H7N4 1312 aaKnown RBP19.6■□□□□ 0.73
COPA-204ENST00000481522 DCAF8L1A6NGE4 600 aa19.47■□□□□ 0.71
COPA-204ENST00000481522 C1QBPQ07021 282 aaKnown RBP19.34■□□□□ 0.69
COPA-204ENST00000481522 POTEHQ6S545 545 aa19.32■□□□□ 0.68
COPA-204ENST00000481522 HOXD11P31277 338 aaPredicted RBP19.11■□□□□ 0.65
COPA-204ENST00000481522 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
COPA-204ENST00000481522 RNF216Q9NWF9 866 aaPredicted RBP18.56■□□□□ 0.56
COPA-204ENST00000481522 PPP4R3CPQ6ZMV5 832 aa18.42■□□□□ 0.54
COPA-204ENST00000481522 CNKSR2Q8WXI2 1034 aa18.36■□□□□ 0.53
COPA-204ENST00000481522 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.09■□□□□ 0.49
COPA-204ENST00000481522 DSG3P32926 999 aa18.06■□□□□ 0.48
COPA-204ENST00000481522 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
COPA-204ENST00000481522 CAPN15O75808 1086 aa17.74■□□□□ 0.43
COPA-204ENST00000481522 U3KPZ7 1027 aaPredicted RBP17.68■□□□□ 0.42
COPA-204ENST00000481522 SP7Q8TDD2 431 aaPredicted RBP17.48■□□□□ 0.39
COPA-204ENST00000481522 CHRDL2Q6WN34 429 aa17.38■□□□□ 0.37
COPA-204ENST00000481522 ABCB7O75027 752 aa17.28■□□□□ 0.36
COPA-204ENST00000481522 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
COPA-204ENST00000481522 RBM42Q9BTD8 480 aaKnown RBP17.16■□□□□ 0.34
COPA-204ENST00000481522 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
COPA-204ENST00000481522 NPM3O75607 178 aaKnown RBP17.1■□□□□ 0.33
COPA-204ENST00000481522 ZNF219Q9P2Y4 722 aaPredicted RBP17.07■□□□□ 0.32
COPA-204ENST00000481522 APLP2Q06481 763 aa16.86■□□□□ 0.29
COPA-204ENST00000481522 SLC4A2P04920 1241 aa16.72■□□□□ 0.27
COPA-204ENST00000481522 PIP4P2Q8N4L2 257 aa16.71■□□□□ 0.27
COPA-204ENST00000481522 HAX1O00165 279 aa16.67■□□□□ 0.26
COPA-204ENST00000481522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.55■□□□□ 0.24
COPA-204ENST00000481522 HNRNPUL2Q1KMD3 747 aaKnown RBP16.55■□□□□ 0.24
COPA-204ENST00000481522 AKT1S1Q96B36 256 aa16.53■□□□□ 0.24
COPA-204ENST00000481522 EVX2Q03828 476 aa16.51■□□□□ 0.23
COPA-204ENST00000481522 SAMD1Q6SPF0 538 aaPredicted RBP16.44■□□□□ 0.22
COPA-204ENST00000481522 FXR2P51116 673 aaKnown RBP eCLIP16.41■□□□□ 0.229e-7■■■■□ 25.1
COPA-204ENST00000481522 POLA2Q14181 598 aa16.4■□□□□ 0.22
COPA-204ENST00000481522 REM2Q8IYK8 340 aaPredicted RBP16.4■□□□□ 0.22
COPA-204ENST00000481522 PLSCR2Q9NRY7 297 aa16.38■□□□□ 0.21
COPA-204ENST00000481522 LHX8Q68G74 356 aa16.35■□□□□ 0.21
COPA-204ENST00000481522 PITPNM1O00562 1244 aa16.27■□□□□ 0.2
COPA-204ENST00000481522 OSCARQ8IYS5 282 aa16■□□□□ 0.15
COPA-204ENST00000481522 GABBR2O75899 941 aa15.99■□□□□ 0.15
COPA-204ENST00000481522 C19orf67A6NJJ6 358 aa15.93■□□□□ 0.14
COPA-204ENST00000481522 ZBTB12Q9Y330 459 aaPredicted RBP15.91■□□□□ 0.14
COPA-204ENST00000481522 MYCNP04198 464 aaPredicted RBP15.79■□□□□ 0.12
COPA-204ENST00000481522 PRKAR2AP13861 404 aaKnown RBP15.78■□□□□ 0.12
COPA-204ENST00000481522 POTEIP0CG38 1075 aa15.73■□□□□ 0.11
COPA-204ENST00000481522 ATF5Q9Y2D1 282 aaPredicted RBP15.64■□□□□ 0.09
COPA-204ENST00000481522 KCNA4P22459 653 aa15.58■□□□□ 0.08
COPA-204ENST00000481522 POTEMA6NI47 508 aa15.48■□□□□ 0.07
COPA-204ENST00000481522 CLEC11AQ9Y240 323 aa15.41■□□□□ 0.06
COPA-204ENST00000481522 SPDYE1Q8NFV5 336 aaPredicted RBP15.4■□□□□ 0.06
COPA-204ENST00000481522 POTEGQ6S5H5 508 aa15.38■□□□□ 0.05
COPA-204ENST00000481522 SPDYE2BA6NHP3 402 aa15.36■□□□□ 0.05
COPA-204ENST00000481522 SPDYE6P0CI01 402 aa15.36■□□□□ 0.05
COPA-204ENST00000481522 SPDYE2Q495Y8 402 aa15.36■□□□□ 0.05
COPA-204ENST00000481522 OTUD5Q96G74 571 aa15.36■□□□□ 0.05
COPA-204ENST00000481522 CHADLQ6NUI6 762 aa15.35■□□□□ 0.05
COPA-204ENST00000481522 PCDH10Q9P2E7 1040 aa15.24■□□□□ 0.03
COPA-204ENST00000481522 CD44P16070 742 aaKnown RBP15.2■□□□□ 0.02
COPA-204ENST00000481522 CLCN6P51797 869 aa15.19■□□□□ 0.02
COPA-204ENST00000481522 POTEB2H3BUK9 544 aa15.18■□□□□ 0.02
COPA-204ENST00000481522 DCBLD2Q96PD2 775 aa15.18■□□□□ 0.02
COPA-204ENST00000481522 SSUH2Q9Y2M2 353 aa15.09■□□□□ 0.01
COPA-204ENST00000481522 PRR29P0C7W0 189 aa14.96□□□□□ -0.01
COPA-204ENST00000481522 LCE2DQ5TA82 110 aaPredicted RBP14.96□□□□□ -0.01
COPA-204ENST00000481522 ZNF579Q8NAF0 562 aaKnown RBP14.96□□□□□ -0.01
COPA-204ENST00000481522 FARP1Q9Y4F1 1045 aaPredicted RBP14.96□□□□□ -0.01
COPA-204ENST00000481522 FBLN2P98095 1184 aa14.94□□□□□ -0.02
COPA-204ENST00000481522 ZNF692Q9BU19 519 aaPredicted RBP14.92□□□□□ -0.02
COPA-204ENST00000481522 FOXD4L1Q9NU39 408 aa14.92□□□□□ -0.02
COPA-204ENST00000481522 GALR2O43603 387 aaPredicted RBP14.87□□□□□ -0.03
COPA-204ENST00000481522 MKRN4PQ13434 485 aaPredicted RBP14.84□□□□□ -0.03
COPA-204ENST00000481522 POTEJP0CG39 1038 aa14.76□□□□□ -0.05
COPA-204ENST00000481522 ZRANB1Q9UGI0 708 aa14.75□□□□□ -0.05
COPA-204ENST00000481522 PELP1Q8IZL8 1130 aaKnown RBP14.73□□□□□ -0.05
COPA-204ENST00000481522 PABPN1Q86U42 306 aaKnown RBP eCLIP14.7□□□□□ -0.06
COPA-204ENST00000481522 FAM163AQ96GL9 167 aaPredicted RBP14.65□□□□□ -0.06
COPA-204ENST00000481522 METRNQ9UJH8 293 aa14.58□□□□□ -0.08
COPA-204ENST00000481522 ATXN8OSP0DMR3 200 aa14.57□□□□□ -0.08
COPA-204ENST00000481522 MAMSTRQ6ZN01 415 aa14.55□□□□□ -0.08
COPA-204ENST00000481522 CDAN1Q8IWY9 1227 aa14.52□□□□□ -0.09
COPA-204ENST00000481522 PHF12Q96QT6 1004 aa14.5□□□□□ -0.09
COPA-204ENST00000481522 ASTLQ6HA08 431 aaPredicted RBP14.47□□□□□ -0.09
COPA-204ENST00000481522 C7P10643 843 aa14.45□□□□□ -0.1
COPA-204ENST00000481522 SLC39A7Q92504 469 aa14.45□□□□□ -0.1
COPA-204ENST00000481522 ATMINO43313 823 aaPredicted RBP14.4□□□□□ -0.1
COPA-204ENST00000481522 SCUBE2Q9NQ36 999 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms