RNA–Protein interactions for RNA: ENST00000480032.4

SCN2A-205, Transcript of sodium voltage-gated channel alpha subunit 2, humanhuman

TSL 1 (best)

Gene SCN2A, Length 11,676 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2A-205ENST00000480032 MYT1Q01538 1121 aa7.82□□□□□ -1.16
SCN2A-205ENST00000480032 PELP1Q8IZL8 1130 aaKnown RBP7.61□□□□□ -1.19
SCN2A-205ENST00000480032 TTBK1Q5TCY1 1321 aaPredicted RBP7.49□□□□□ -1.21
SCN2A-205ENST00000480032 ERICH6Q7L0X2 663 aa6.92□□□□□ -1.3
SCN2A-205ENST00000480032 ZEB1P37275 1124 aaPredicted RBP6.71□□□□□ -1.34
SCN2A-205ENST00000480032 YTHDC1Q96MU7 727 aaKnown RBP6.7□□□□□ -1.34
SCN2A-205ENST00000480032 MYT1LQ9UL68 1186 aa6.66□□□□□ -1.34
SCN2A-205ENST00000480032 CLSPNQ9HAW4 1339 aa6.64□□□□□ -1.35
SCN2A-205ENST00000480032 CENPBP07199 599 aaPredicted RBP6.63□□□□□ -1.35
SCN2A-205ENST00000480032 CCER1Q8TC90 406 aaPredicted RBP6.63□□□□□ -1.35
SCN2A-205ENST00000480032 NISCHQ9Y2I1 1504 aa6.59□□□□□ -1.35
SCN2A-205ENST00000480032 EHMT2Q96KQ7 1210 aa6.52□□□□□ -1.37
SCN2A-205ENST00000480032 RANGAP1P46060 587 aaPredicted RBP6.39□□□□□ -1.39
SCN2A-205ENST00000480032 GLIPR1L2Q4G1C9 344 aa6.37□□□□□ -1.39
SCN2A-205ENST00000480032 SLC24A1O60721 1099 aa6.34□□□□□ -1.4
SCN2A-205ENST00000480032 HRCP23327 699 aa6.29□□□□□ -1.4
SCN2A-205ENST00000480032 DCAF8L2P0C7V8 631 aa6.21□□□□□ -1.42
SCN2A-205ENST00000480032 SHROOM4Q9ULL8 1493 aa6.2□□□□□ -1.42
SCN2A-205ENST00000480032 ARID4BQ4LE39 1312 aaPredicted RBP6.19□□□□□ -1.42
SCN2A-205ENST00000480032 DAXXQ9UER7 740 aaPredicted RBP6.19□□□□□ -1.42
SCN2A-205ENST00000480032 ERICH6BQ5W0A0 696 aa6.16□□□□□ -1.42
SCN2A-205ENST00000480032 FAM9AQ8IZU1 332 aaPredicted RBP6.15□□□□□ -1.42
SCN2A-205ENST00000480032 NEFLP07196 543 aa6.15□□□□□ -1.42
SCN2A-205ENST00000480032 NCLP19338 710 aaKnown RBP6.13□□□□□ -1.43
SCN2A-205ENST00000480032 ZNF326Q5BKZ1 582 aaKnown RBP6.09□□□□□ -1.43
SCN2A-205ENST00000480032 RTL5Q5HYW3 569 aaPredicted RBP6.09□□□□□ -1.44
SCN2A-205ENST00000480032 HMGB1P09429 215 aaKnown RBP6.05□□□□□ -1.44
SCN2A-205ENST00000480032 TRIM26Q12899 539 aaPredicted RBP6.04□□□□□ -1.44
SCN2A-205ENST00000480032 APLP2Q06481 763 aa6.01□□□□□ -1.45
SCN2A-205ENST00000480032 ANP32EQ9BTT0 268 aa6□□□□□ -1.45
SCN2A-205ENST00000480032 ANP32AP39687 249 aaKnown RBP5.99□□□□□ -1.45
SCN2A-205ENST00000480032 ACIN1Q9UKV3 1341 aaKnown RBP5.97□□□□□ -1.45
SCN2A-205ENST00000480032 DCAF1Q9Y4B6 1507 aa5.96□□□□□ -1.45
SCN2A-205ENST00000480032 EIF5BO60841 1220 aaKnown RBP5.96□□□□□ -1.46
SCN2A-205ENST00000480032 POLR3GLQ9BT43 218 aa5.95□□□□□ -1.46
SCN2A-205ENST00000480032 CDK11AQ9UQ88 783 aaPredicted RBP5.95□□□□□ -1.46
SCN2A-205ENST00000480032 CCDC180Q9P1Z9 1646 aa5.93□□□□□ -1.46
SCN2A-205ENST00000480032 TRIM44Q96DX7 344 aaPredicted RBP5.93□□□□□ -1.46
SCN2A-205ENST00000480032 PTMSP20962 102 aa5.92□□□□□ -1.46
SCN2A-205ENST00000480032 ARXQ96QS3 562 aa5.92□□□□□ -1.46
SCN2A-205ENST00000480032 NEUROD1Q13562 356 aa5.91□□□□□ -1.46
SCN2A-205ENST00000480032 LAS1LQ9Y4W2 734 aaKnown RBP5.9□□□□□ -1.47
SCN2A-205ENST00000480032 PCGF6Q9BYE7 350 aa5.89□□□□□ -1.47
SCN2A-205ENST00000480032 ANP32BQ92688 251 aaKnown RBP5.89□□□□□ -1.47
SCN2A-205ENST00000480032 MYO15BQ96JP2 1530 aa5.89□□□□□ -1.47
SCN2A-205ENST00000480032 TNNT2P45379 298 aaPredicted RBP5.88□□□□□ -1.47
SCN2A-205ENST00000480032 USP35Q9P2H5 1018 aa5.86□□□□□ -1.47
SCN2A-205ENST00000480032 ZNF316A6NFI3 1004 aaPredicted RBP5.85□□□□□ -1.47
SCN2A-205ENST00000480032 BCL11AQ9H165 835 aa5.83□□□□□ -1.48
SCN2A-205ENST00000480032 ARID3AQ99856 593 aa5.82□□□□□ -1.48
SCN2A-205ENST00000480032 DIEXFQ68CQ4 756 aaKnown RBP5.8□□□□□ -1.48
SCN2A-205ENST00000480032 RSPH6AQ9H0K4 717 aa5.8□□□□□ -1.48
SCN2A-205ENST00000480032 MTERF4Q7Z6M4 381 aaKnown RBP5.79□□□□□ -1.48
SCN2A-205ENST00000480032 GTF3C3Q9Y5Q9 886 aa5.78□□□□□ -1.48
SCN2A-205ENST00000480032 NCBP3Q53F19 620 aaKnown RBP5.78□□□□□ -1.48
SCN2A-205ENST00000480032 PPM1GO15355 546 aaPredicted RBP5.77□□□□□ -1.49
SCN2A-205ENST00000480032 AMER1Q5JTC6 1135 aaPredicted RBP5.76□□□□□ -1.49
SCN2A-205ENST00000480032 SCAF1Q9H7N4 1312 aaKnown RBP5.75□□□□□ -1.49
SCN2A-205ENST00000480032 MAP7D2Q96T17 732 aa5.75□□□□□ -1.49
SCN2A-205ENST00000480032 CALRP27797 417 aaKnown RBP5.74□□□□□ -1.49
SCN2A-205ENST00000480032 HOMEZQ8IX15 550 aa5.73□□□□□ -1.49
SCN2A-205ENST00000480032 ISY1Q9ULR0 285 aaKnown RBP5.71□□□□□ -1.5
SCN2A-205ENST00000480032 TAF3Q5VWG9 929 aa5.71□□□□□ -1.5
SCN2A-205ENST00000480032 NEFMP07197 916 aa5.7□□□□□ -1.5
SCN2A-205ENST00000480032 FBXO3Q9UK99 471 aa5.7□□□□□ -1.5
SCN2A-205ENST00000480032 A0A0U1RQG5 324 aaPredicted RBP5.7□□□□□ -1.5
SCN2A-205ENST00000480032 PRKCSHP14314 528 aaPredicted RBP5.69□□□□□ -1.5
SCN2A-205ENST00000480032 CDK11BP21127 795 aaKnown RBP5.69□□□□□ -1.5
SCN2A-205ENST00000480032 UBE2Q2Q8WVN8 375 aa5.69□□□□□ -1.5
SCN2A-205ENST00000480032 TIMELESSQ9UNS1 1208 aa5.69□□□□□ -1.5
SCN2A-205ENST00000480032 CNGB1Q14028 1251 aaPredicted RBP5.69□□□□□ -1.5
SCN2A-205ENST00000480032 SUPT5HO00267 1087 aaKnown RBP5.68□□□□□ -1.5
SCN2A-205ENST00000480032 PNNQ9H307 717 aaKnown RBP5.67□□□□□ -1.5
SCN2A-205ENST00000480032 DDRGK1Q96HY6 314 aa5.67□□□□□ -1.5
SCN2A-205ENST00000480032 FANCIQ9NVI1 1328 aa5.65□□□□□ -1.5
SCN2A-205ENST00000480032 NBR1Q14596 966 aa5.65□□□□□ -1.5
SCN2A-205ENST00000480032 HMGB1P1B2RPK0 211 aaPredicted RBP5.65□□□□□ -1.51
SCN2A-205ENST00000480032 TSPYL1Q9H0U9 437 aa5.65□□□□□ -1.51
SCN2A-205ENST00000480032 L1TD1Q5T7N2 865 aaKnown RBP5.64□□□□□ -1.51
SCN2A-205ENST00000480032 GOLGA6L3A6NEY3 463 aa5.64□□□□□ -1.51
SCN2A-205ENST00000480032 PKNOX2Q96KN3 472 aa5.62□□□□□ -1.51
SCN2A-205ENST00000480032 PTMAP06454 111 aaKnown RBP5.61□□□□□ -1.51
SCN2A-205ENST00000480032 RRP9O43818 475 aaKnown RBP5.6□□□□□ -1.51
SCN2A-205ENST00000480032 UPF2Q9HAU5 1272 aaKnown RBP5.6□□□□□ -1.51
SCN2A-205ENST00000480032 ZBTB47Q9UFB7 747 aaPredicted RBP5.6□□□□□ -1.51
SCN2A-205ENST00000480032 EEA1Q15075 1411 aa5.59□□□□□ -1.52
SCN2A-205ENST00000480032 ZCCHC6Q5VYS8 1495 aaKnown RBP5.58□□□□□ -1.52
SCN2A-205ENST00000480032 CFAP44Q96MT7 982 aa5.58□□□□□ -1.52
SCN2A-205ENST00000480032 CHIC1Q5VXU3 224 aa5.57□□□□□ -1.52
SCN2A-205ENST00000480032 GOLGA6L22H0YM25 854 aa5.57□□□□□ -1.52
SCN2A-205ENST00000480032 HSP90B1P14625 803 aaKnown RBP5.56□□□□□ -1.52
SCN2A-205ENST00000480032 BECN1Q14457 450 aa5.56□□□□□ -1.52
SCN2A-205ENST00000480032 IL27Q8NEV9 243 aa5.55□□□□□ -1.52
SCN2A-205ENST00000480032 CREBRFQ8IUR6 639 aa5.55□□□□□ -1.52
SCN2A-205ENST00000480032 BCANQ96GW7 911 aa5.55□□□□□ -1.52
SCN2A-205ENST00000480032 NACADO15069 1562 aa5.54□□□□□ -1.52
SCN2A-205ENST00000480032 PODXL2Q9NZ53 605 aa5.54□□□□□ -1.52
SCN2A-205ENST00000480032 BCCIPQ9P287 314 aaKnown RBP eCLIP5.54□□□□□ -1.52
SCN2A-205ENST00000480032 HSP90AA1P07900 732 aaKnown RBP5.54□□□□□ -1.52
SCN2A-205ENST00000480032 HSP90AA2PQ14568 343 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms