RNA–Protein interactions for RNA: ENST00000477434.5

PDZRN3-206, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 4

Gene PDZRN3, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-206ENST00000477434 AEBP2Q6ZN18 517 aaPredicted RBP21.7■■□□□ 1.06
PDZRN3-206ENST00000477434 CHIC1Q5VXU3 224 aa21.1■□□□□ 0.97
PDZRN3-206ENST00000477434 PHF23Q9BUL5 403 aaPredicted RBP18.52■□□□□ 0.56
PDZRN3-206ENST00000477434 SENP3Q9H4L4 574 aaPredicted RBP18.48■□□□□ 0.55
PDZRN3-206ENST00000477434 FOXD1Q16676 465 aa17.13■□□□□ 0.33
PDZRN3-206ENST00000477434 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
PDZRN3-206ENST00000477434 PPP6R1Q9UPN7 881 aa16.37■□□□□ 0.21
PDZRN3-206ENST00000477434 ADRA2BP18089 450 aa16.34■□□□□ 0.21
PDZRN3-206ENST00000477434 PIAS4Q8N2W9 510 aaPredicted RBP16.13■□□□□ 0.17
PDZRN3-206ENST00000477434 MSH5O43196 834 aa15.89■□□□□ 0.13
PDZRN3-206ENST00000477434 PPP4R3CPQ6ZMV5 832 aa15.02■□□□□ -0
PDZRN3-206ENST00000477434 SCAF1Q9H7N4 1312 aaKnown RBP15.01□□□□□ -0.01
PDZRN3-206ENST00000477434 MAPK8IP2Q13387 824 aaPredicted RBP14.86□□□□□ -0.03
PDZRN3-206ENST00000477434 DMRT2Q9Y5R5 561 aa14.72□□□□□ -0.05
PDZRN3-206ENST00000477434 POTEDQ86YR6 584 aa14.67□□□□□ -0.06
PDZRN3-206ENST00000477434 CNKSR2Q8WXI2 1034 aa14.65□□□□□ -0.06
PDZRN3-206ENST00000477434 NCBP3Q53F19 620 aaKnown RBP14.62□□□□□ -0.07
PDZRN3-206ENST00000477434 KCNA4P22459 653 aa14.5□□□□□ -0.09
PDZRN3-206ENST00000477434 RNF216Q9NWF9 866 aaPredicted RBP14.4□□□□□ -0.1
PDZRN3-206ENST00000477434 HOXD11P31277 338 aaPredicted RBP14.38□□□□□ -0.11
PDZRN3-206ENST00000477434 NPM3O75607 178 aaKnown RBP14.37□□□□□ -0.11
PDZRN3-206ENST00000477434 DCAF8L1A6NGE4 600 aa14.06□□□□□ -0.16
PDZRN3-206ENST00000477434 DNAJC5BQ9UF47 199 aa14.04□□□□□ -0.16
PDZRN3-206ENST00000477434 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
PDZRN3-206ENST00000477434 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.68□□□□□ -0.22
PDZRN3-206ENST00000477434 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
PDZRN3-206ENST00000477434 RNF39Q9H2S5 420 aa13.59□□□□□ -0.23
PDZRN3-206ENST00000477434 C1QBPQ07021 282 aaKnown RBP13.44□□□□□ -0.26
PDZRN3-206ENST00000477434 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
PDZRN3-206ENST00000477434 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
PDZRN3-206ENST00000477434 ZBTB22O15209 634 aa13.34□□□□□ -0.27
PDZRN3-206ENST00000477434 CACNB1Q02641 598 aaPredicted RBP13.32□□□□□ -0.28
PDZRN3-206ENST00000477434 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
PDZRN3-206ENST00000477434 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.27□□□□□ -0.29
PDZRN3-206ENST00000477434 HNRNPUL2Q1KMD3 747 aaKnown RBP13.27□□□□□ -0.29
PDZRN3-206ENST00000477434 EHMT2Q96KQ7 1210 aa13.22□□□□□ -0.29
PDZRN3-206ENST00000477434 SAMD1Q6SPF0 538 aaPredicted RBP13.2□□□□□ -0.3
PDZRN3-206ENST00000477434 APLP2Q06481 763 aa13.17□□□□□ -0.3
PDZRN3-206ENST00000477434 CSRNP3Q8WYN3 585 aa13.16□□□□□ -0.3
PDZRN3-206ENST00000477434 SPINK5Q9NQ38 1064 aaPredicted RBP13.09□□□□□ -0.31
PDZRN3-206ENST00000477434 CAPN15O75808 1086 aa13.05□□□□□ -0.32
PDZRN3-206ENST00000477434 ATXN8OSP0DMR3 200 aa12.99□□□□□ -0.33
PDZRN3-206ENST00000477434 ZNF219Q9P2Y4 722 aaPredicted RBP12.99□□□□□ -0.33
PDZRN3-206ENST00000477434 TRHP20396 242 aaPredicted RBP12.95□□□□□ -0.34
PDZRN3-206ENST00000477434 ATF5Q9Y2D1 282 aaPredicted RBP12.91□□□□□ -0.34
PDZRN3-206ENST00000477434 DSG3P32926 999 aa12.88□□□□□ -0.35
PDZRN3-206ENST00000477434 ABCB7O75027 752 aa12.78□□□□□ -0.36
PDZRN3-206ENST00000477434 POLA2Q14181 598 aa12.73□□□□□ -0.37
PDZRN3-206ENST00000477434 ZBTB12Q9Y330 459 aaPredicted RBP12.55□□□□□ -0.4
PDZRN3-206ENST00000477434 FBLN2P98095 1184 aa12.42□□□□□ -0.42
PDZRN3-206ENST00000477434 MKRN4PQ13434 485 aaPredicted RBP12.36□□□□□ -0.43
PDZRN3-206ENST00000477434 RBM42Q9BTD8 480 aaKnown RBP12.3□□□□□ -0.44
PDZRN3-206ENST00000477434 OSCARQ8IYS5 282 aa12.29□□□□□ -0.44
PDZRN3-206ENST00000477434 SPDYE2BA6NHP3 402 aa12.19□□□□□ -0.46
PDZRN3-206ENST00000477434 SPDYE6P0CI01 402 aa12.19□□□□□ -0.46
PDZRN3-206ENST00000477434 SPDYE2Q495Y8 402 aa12.19□□□□□ -0.46
PDZRN3-206ENST00000477434 AKT1S1Q96B36 256 aa12.12□□□□□ -0.47
PDZRN3-206ENST00000477434 ZNF692Q9BU19 519 aaPredicted RBP12.1□□□□□ -0.47
PDZRN3-206ENST00000477434 SSUH2Q9Y2M2 353 aa12.07□□□□□ -0.48
PDZRN3-206ENST00000477434 SPDYE4A6NLX3 237 aa12.03□□□□□ -0.48
PDZRN3-206ENST00000477434 REM2Q8IYK8 340 aaPredicted RBP11.98□□□□□ -0.49
PDZRN3-206ENST00000477434 PABPN1Q86U42 306 aaKnown RBP eCLIP11.93□□□□□ -0.5
PDZRN3-206ENST00000477434 FKBP8Q14318 412 aa11.9□□□□□ -0.5
PDZRN3-206ENST00000477434 SPDYE1Q8NFV5 336 aaPredicted RBP11.85□□□□□ -0.51
PDZRN3-206ENST00000477434 PITPNM1O00562 1244 aa11.84□□□□□ -0.51
PDZRN3-206ENST00000477434 PROM2Q8N271 834 aa11.84□□□□□ -0.51
PDZRN3-206ENST00000477434 CHRDL2Q6WN34 429 aa11.82□□□□□ -0.52
PDZRN3-206ENST00000477434 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.53
PDZRN3-206ENST00000477434 STAG3Q9UJ98 1225 aa11.74□□□□□ -0.53
PDZRN3-206ENST00000477434 PRR29P0C7W0 189 aa11.67□□□□□ -0.54
PDZRN3-206ENST00000477434 FXR2P51116 673 aaKnown RBP eCLIP11.66□□□□□ -0.54
PDZRN3-206ENST00000477434 PIP4P2Q8N4L2 257 aa11.63□□□□□ -0.55
PDZRN3-206ENST00000477434 POTEHQ6S545 545 aa11.6□□□□□ -0.55
PDZRN3-206ENST00000477434 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
PDZRN3-206ENST00000477434 PRKAR2AP13861 404 aaKnown RBP11.54□□□□□ -0.56
PDZRN3-206ENST00000477434 CHADLQ6NUI6 762 aa11.49□□□□□ -0.57
PDZRN3-206ENST00000477434 CREBZFQ9NS37 354 aa11.48□□□□□ -0.57
PDZRN3-206ENST00000477434 MIER1Q8N108 512 aa11.42□□□□□ -0.58
PDZRN3-206ENST00000477434 PLEKHG5O94827 1062 aa11.41□□□□□ -0.58
PDZRN3-206ENST00000477434 FARP1Q9Y4F1 1045 aaPredicted RBP11.4□□□□□ -0.58
PDZRN3-206ENST00000477434 PLCD3Q8N3E9 789 aa11.39□□□□□ -0.59
PDZRN3-206ENST00000477434 VASPP50552 380 aaPredicted RBP11.38□□□□□ -0.59
PDZRN3-206ENST00000477434 MNX1P50219 401 aaPredicted RBP11.35□□□□□ -0.59
PDZRN3-206ENST00000477434 NPM1P06748 294 aaKnown RBP eCLIP11.32□□□□□ -0.6
PDZRN3-206ENST00000477434 ZBTB47Q9UFB7 747 aaPredicted RBP11.32□□□□□ -0.6
PDZRN3-206ENST00000477434 HAX1O00165 279 aa11.29□□□□□ -0.6
PDZRN3-206ENST00000477434 C19orf67A6NJJ6 358 aa11.26□□□□□ -0.61
PDZRN3-206ENST00000477434 IFNLR1Q8IU57 520 aaPredicted RBP11.21□□□□□ -0.61
PDZRN3-206ENST00000477434 CD44P16070 742 aaKnown RBP11.2□□□□□ -0.62
PDZRN3-206ENST00000477434 KLHL34Q8N239 644 aa11.2□□□□□ -0.62
PDZRN3-206ENST00000477434 EVX2Q03828 476 aa11.16□□□□□ -0.62
PDZRN3-206ENST00000477434 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
PDZRN3-206ENST00000477434 NUBP1P53384 320 aa11.15□□□□□ -0.62
PDZRN3-206ENST00000477434 RASEFQ8IZ41 740 aa11.12□□□□□ -0.63
PDZRN3-206ENST00000477434 ZRANB1Q9UGI0 708 aa11.12□□□□□ -0.63
PDZRN3-206ENST00000477434 SPOCK2Q92563 424 aa11.11□□□□□ -0.63
PDZRN3-206ENST00000477434 SP7Q8TDD2 431 aaPredicted RBP11.1□□□□□ -0.63
PDZRN3-206ENST00000477434 TSPYL2Q9H2G4 693 aaPredicted RBP11.08□□□□□ -0.64
PDZRN3-206ENST00000477434 ZNF579Q8NAF0 562 aaKnown RBP11.07□□□□□ -0.64
PDZRN3-206ENST00000477434 FAM212AQ96EL1 285 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms