RNA–Protein interactions for RNA: ENST00000476824.1

ITGA4-208, Transcript of integrin subunit alpha 4, humanhuman

TSL 1 (best)

Gene ITGA4, Length 1,004 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-208ENST00000476824 AEBP2Q6ZN18 517 aaPredicted RBP20.63■□□□□ 0.89
ITGA4-208ENST00000476824 CHIC1Q5VXU3 224 aa20.01■□□□□ 0.79
ITGA4-208ENST00000476824 PHF23Q9BUL5 403 aaPredicted RBP17.65■□□□□ 0.42
ITGA4-208ENST00000476824 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
ITGA4-208ENST00000476824 FOXD1Q16676 465 aa16.24■□□□□ 0.19
ITGA4-208ENST00000476824 PLPPR3Q6T4P5 718 aa16.18■□□□□ 0.18
ITGA4-208ENST00000476824 PPP6R1Q9UPN7 881 aa15.62■□□□□ 0.09
ITGA4-208ENST00000476824 ADRA2BP18089 450 aa15.59■□□□□ 0.09
ITGA4-208ENST00000476824 PIAS4Q8N2W9 510 aaPredicted RBP15.28■□□□□ 0.04
ITGA4-208ENST00000476824 MSH5O43196 834 aa14.9□□□□□ -0.02
ITGA4-208ENST00000476824 PPP4R3CPQ6ZMV5 832 aa14.3□□□□□ -0.12
ITGA4-208ENST00000476824 MAPK8IP2Q13387 824 aaPredicted RBP14.19□□□□□ -0.14
ITGA4-208ENST00000476824 SCAF1Q9H7N4 1312 aaKnown RBP14.13□□□□□ -0.15
ITGA4-208ENST00000476824 KCNA4P22459 653 aa13.94□□□□□ -0.18
ITGA4-208ENST00000476824 DMRT2Q9Y5R5 561 aa13.91□□□□□ -0.18
ITGA4-208ENST00000476824 CNKSR2Q8WXI2 1034 aa13.87□□□□□ -0.19
ITGA4-208ENST00000476824 NCBP3Q53F19 620 aaKnown RBP13.82□□□□□ -0.2
ITGA4-208ENST00000476824 POTEDQ86YR6 584 aa13.78□□□□□ -0.2
ITGA4-208ENST00000476824 NPM3O75607 178 aaKnown RBP13.71□□□□□ -0.21
ITGA4-208ENST00000476824 RNF216Q9NWF9 866 aaPredicted RBP13.6□□□□□ -0.23
ITGA4-208ENST00000476824 HOXD11P31277 338 aaPredicted RBP13.58□□□□□ -0.24
ITGA4-208ENST00000476824 DCAF8L1A6NGE4 600 aa13.36□□□□□ -0.27
ITGA4-208ENST00000476824 SLC4A1APQ9BWU0 796 aaKnown RBP13.22□□□□□ -0.29
ITGA4-208ENST00000476824 DNAJC5BQ9UF47 199 aa13.2□□□□□ -0.3
ITGA4-208ENST00000476824 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
ITGA4-208ENST00000476824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.96□□□□□ -0.33
ITGA4-208ENST00000476824 ZBTB22O15209 634 aa12.86□□□□□ -0.35
ITGA4-208ENST00000476824 EHMT2Q96KQ7 1210 aa12.83□□□□□ -0.36
ITGA4-208ENST00000476824 RNF39Q9H2S5 420 aa12.82□□□□□ -0.36
ITGA4-208ENST00000476824 FOXD4L1Q9NU39 408 aa12.78□□□□□ -0.36
ITGA4-208ENST00000476824 U3KPZ7 1027 aaPredicted RBP12.78□□□□□ -0.36
ITGA4-208ENST00000476824 CSRNP3Q8WYN3 585 aa12.68□□□□□ -0.38
ITGA4-208ENST00000476824 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
ITGA4-208ENST00000476824 C1QBPQ07021 282 aaKnown RBP12.61□□□□□ -0.39
ITGA4-208ENST00000476824 CACNB1Q02641 598 aaPredicted RBP12.54□□□□□ -0.4
ITGA4-208ENST00000476824 SPINK5Q9NQ38 1064 aaPredicted RBP12.48□□□□□ -0.41
ITGA4-208ENST00000476824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.41
ITGA4-208ENST00000476824 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
ITGA4-208ENST00000476824 SAMD1Q6SPF0 538 aaPredicted RBP12.45□□□□□ -0.42
ITGA4-208ENST00000476824 ATF5Q9Y2D1 282 aaPredicted RBP12.4□□□□□ -0.42
ITGA4-208ENST00000476824 CAPN15O75808 1086 aa12.38□□□□□ -0.43
ITGA4-208ENST00000476824 TRHP20396 242 aaPredicted RBP12.33□□□□□ -0.44
ITGA4-208ENST00000476824 APLP2Q06481 763 aa12.33□□□□□ -0.44
ITGA4-208ENST00000476824 ATXN8OSP0DMR3 200 aa12.28□□□□□ -0.44
ITGA4-208ENST00000476824 ZNF219Q9P2Y4 722 aaPredicted RBP12.23□□□□□ -0.45
ITGA4-208ENST00000476824 ABCB7O75027 752 aa12.2□□□□□ -0.46
ITGA4-208ENST00000476824 DSG3P32926 999 aa12.18□□□□□ -0.46
ITGA4-208ENST00000476824 POLA2Q14181 598 aa12.1□□□□□ -0.47
ITGA4-208ENST00000476824 MKRN4PQ13434 485 aaPredicted RBP11.83□□□□□ -0.52
ITGA4-208ENST00000476824 ZBTB12Q9Y330 459 aaPredicted RBP11.79□□□□□ -0.52
ITGA4-208ENST00000476824 FBLN2P98095 1184 aa11.76□□□□□ -0.53
ITGA4-208ENST00000476824 OSCARQ8IYS5 282 aa11.71□□□□□ -0.53
ITGA4-208ENST00000476824 RBM42Q9BTD8 480 aaKnown RBP11.53□□□□□ -0.56
ITGA4-208ENST00000476824 SPDYE2BA6NHP3 402 aa11.51□□□□□ -0.57
ITGA4-208ENST00000476824 SPDYE6P0CI01 402 aa11.51□□□□□ -0.57
ITGA4-208ENST00000476824 SPDYE2Q495Y8 402 aa11.51□□□□□ -0.57
ITGA4-208ENST00000476824 ZNF692Q9BU19 519 aaPredicted RBP11.49□□□□□ -0.57
ITGA4-208ENST00000476824 SPDYE4A6NLX3 237 aa11.48□□□□□ -0.57
ITGA4-208ENST00000476824 FKBP8Q14318 412 aa11.46□□□□□ -0.57
ITGA4-208ENST00000476824 SSUH2Q9Y2M2 353 aa11.44□□□□□ -0.58
ITGA4-208ENST00000476824 AKT1S1Q96B36 256 aa11.4□□□□□ -0.58
ITGA4-208ENST00000476824 PABPN1Q86U42 306 aaKnown RBP eCLIP11.36□□□□□ -0.59
ITGA4-208ENST00000476824 REM2Q8IYK8 340 aaPredicted RBP11.35□□□□□ -0.59
ITGA4-208ENST00000476824 PROM2Q8N271 834 aa11.26□□□□□ -0.61
ITGA4-208ENST00000476824 PITPNM1O00562 1244 aa11.24□□□□□ -0.61
ITGA4-208ENST00000476824 CLEC11AQ9Y240 323 aa11.2□□□□□ -0.62
ITGA4-208ENST00000476824 SPDYE1Q8NFV5 336 aaPredicted RBP11.18□□□□□ -0.62
ITGA4-208ENST00000476824 CHRDL2Q6WN34 429 aa11.15□□□□□ -0.62
ITGA4-208ENST00000476824 STAG3Q9UJ98 1225 aa11.06□□□□□ -0.64
ITGA4-208ENST00000476824 PRR29P0C7W0 189 aa11.05□□□□□ -0.64
ITGA4-208ENST00000476824 PIP4P2Q8N4L2 257 aa11.02□□□□□ -0.65
ITGA4-208ENST00000476824 FXR2P51116 673 aaKnown RBP eCLIP11□□□□□ -0.65
ITGA4-208ENST00000476824 CHADLQ6NUI6 762 aa10.98□□□□□ -0.65
ITGA4-208ENST00000476824 FBXO3Q9UK99 471 aa10.97□□□□□ -0.65
ITGA4-208ENST00000476824 PRKAR2AP13861 404 aaKnown RBP10.94□□□□□ -0.66
ITGA4-208ENST00000476824 CREBZFQ9NS37 354 aa10.93□□□□□ -0.66
ITGA4-208ENST00000476824 VASPP50552 380 aaPredicted RBP10.9□□□□□ -0.66
ITGA4-208ENST00000476824 MIER1Q8N108 512 aa10.9□□□□□ -0.66
ITGA4-208ENST00000476824 POTEHQ6S545 545 aa10.87□□□□□ -0.67
ITGA4-208ENST00000476824 PLCD3Q8N3E9 789 aa10.87□□□□□ -0.67
ITGA4-208ENST00000476824 MNX1P50219 401 aaPredicted RBP10.81□□□□□ -0.68
ITGA4-208ENST00000476824 FARP1Q9Y4F1 1045 aaPredicted RBP10.81□□□□□ -0.68
ITGA4-208ENST00000476824 IFNLR1Q8IU57 520 aaPredicted RBP10.78□□□□□ -0.68
ITGA4-208ENST00000476824 PLEKHG5O94827 1062 aa10.76□□□□□ -0.69
ITGA4-208ENST00000476824 KLHL34Q8N239 644 aa10.73□□□□□ -0.69
ITGA4-208ENST00000476824 HAX1O00165 279 aa10.67□□□□□ -0.7
ITGA4-208ENST00000476824 NPM1P06748 294 aaKnown RBP eCLIP10.67□□□□□ -0.7
ITGA4-208ENST00000476824 ZBTB47Q9UFB7 747 aaPredicted RBP10.66□□□□□ -0.7
ITGA4-208ENST00000476824 EVX2Q03828 476 aa10.65□□□□□ -0.7
ITGA4-208ENST00000476824 C19orf67A6NJJ6 358 aa10.64□□□□□ -0.71
ITGA4-208ENST00000476824 NUBP1P53384 320 aa10.64□□□□□ -0.71
ITGA4-208ENST00000476824 RASEFQ8IZ41 740 aa10.64□□□□□ -0.71
ITGA4-208ENST00000476824 CD44P16070 742 aaKnown RBP10.62□□□□□ -0.71
ITGA4-208ENST00000476824 SPOCK2Q92563 424 aa10.61□□□□□ -0.71
ITGA4-208ENST00000476824 TSPYL2Q9H2G4 693 aaPredicted RBP10.59□□□□□ -0.71
ITGA4-208ENST00000476824 ZRANB1Q9UGI0 708 aa10.55□□□□□ -0.72
ITGA4-208ENST00000476824 DCAF8Q5TAQ9 597 aa10.53□□□□□ -0.72
ITGA4-208ENST00000476824 PAK3O75914 559 aaPredicted RBP10.51□□□□□ -0.73
ITGA4-208ENST00000476824 FAM212AQ96EL1 285 aa10.51□□□□□ -0.73
ITGA4-208ENST00000476824 PHF12Q96QT6 1004 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms