RNA–Protein interactions for RNA: ENST00000473480.5

A1CF-209, Transcript of APOBEC1 complementation factor, humanhuman

TSL 3

Gene A1CF, Length 813 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
A1CF-209ENST00000473480 AEBP2Q6ZN18 517 aaPredicted RBP33.99■■■■□ 3.03
A1CF-209ENST00000473480 CHIC1Q5VXU3 224 aa33.1■■■□□ 2.89
A1CF-209ENST00000473480 PHF23Q9BUL5 403 aaPredicted RBP29.05■■■□□ 2.24
A1CF-209ENST00000473480 SENP3Q9H4L4 574 aaPredicted RBP28.95■■■□□ 2.22
A1CF-209ENST00000473480 PLPPR3Q6T4P5 718 aa26.85■■□□□ 1.89
A1CF-209ENST00000473480 FOXD1Q16676 465 aa26.83■■□□□ 1.89
A1CF-209ENST00000473480 PPP6R1Q9UPN7 881 aa25.68■■□□□ 1.7
A1CF-209ENST00000473480 ADRA2BP18089 450 aa25.66■■□□□ 1.7
A1CF-209ENST00000473480 PIAS4Q8N2W9 510 aaPredicted RBP25.3■■□□□ 1.64
A1CF-209ENST00000473480 MSH5O43196 834 aa24.86■■□□□ 1.57
A1CF-209ENST00000473480 PPP4R3CPQ6ZMV5 832 aa23.61■■□□□ 1.37
A1CF-209ENST00000473480 SCAF1Q9H7N4 1312 aaKnown RBP23.58■■□□□ 1.36
A1CF-209ENST00000473480 MAPK8IP2Q13387 824 aaPredicted RBP23.31■■□□□ 1.32
A1CF-209ENST00000473480 DMRT2Q9Y5R5 561 aa23.07■■□□□ 1.28
A1CF-209ENST00000473480 CNKSR2Q8WXI2 1034 aa23.01■■□□□ 1.27
A1CF-209ENST00000473480 NCBP3Q53F19 620 aaKnown RBP23■■□□□ 1.27
A1CF-209ENST00000473480 KCNA4P22459 653 aa22.88■■□□□ 1.25
A1CF-209ENST00000473480 POTEDQ86YR6 584 aa22.84■■□□□ 1.25
A1CF-209ENST00000473480 NPM3O75607 178 aaKnown RBP22.6■■□□□ 1.21
A1CF-209ENST00000473480 RNF216Q9NWF9 866 aaPredicted RBP22.59■■□□□ 1.21
A1CF-209ENST00000473480 HOXD11P31277 338 aaPredicted RBP22.53■■□□□ 1.2
A1CF-209ENST00000473480 DCAF8L1A6NGE4 600 aa22.08■■□□□ 1.13
A1CF-209ENST00000473480 DNAJC5BQ9UF47 199 aa22.01■■□□□ 1.11
A1CF-209ENST00000473480 SLC4A1APQ9BWU0 796 aaKnown RBP21.79■■□□□ 1.08
A1CF-209ENST00000473480 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.49■■□□□ 1.032e-6■■□□□ 13.2
A1CF-209ENST00000473480 SLC4A2P04920 1241 aa21.36■■□□□ 1.01
A1CF-209ENST00000473480 RNF39Q9H2S5 420 aa21.26■□□□□ 0.99
A1CF-209ENST00000473480 FOXD4L1Q9NU39 408 aa21.13■□□□□ 0.97
A1CF-209ENST00000473480 U3KPZ7 1027 aaPredicted RBP21.09■□□□□ 0.97
A1CF-209ENST00000473480 C1QBPQ07021 282 aaKnown RBP21.03■□□□□ 0.96
A1CF-209ENST00000473480 ZBTB22O15209 634 aa21.02■□□□□ 0.96
A1CF-209ENST00000473480 EHMT2Q96KQ7 1210 aa20.97■□□□□ 0.95
A1CF-209ENST00000473480 MYCNP04198 464 aaPredicted RBP20.93■□□□□ 0.94
A1CF-209ENST00000473480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.85■□□□□ 0.93
A1CF-209ENST00000473480 HNRNPUL2Q1KMD3 747 aaKnown RBP20.85■□□□□ 0.93
A1CF-209ENST00000473480 CACNB1Q02641 598 aaPredicted RBP20.82■□□□□ 0.92
A1CF-209ENST00000473480 CSRNP3Q8WYN3 585 aa20.8■□□□□ 0.92
A1CF-209ENST00000473480 SAMD1Q6SPF0 538 aaPredicted RBP20.75■□□□□ 0.91
A1CF-209ENST00000473480 APLP2Q06481 763 aa20.68■□□□□ 0.9
A1CF-209ENST00000473480 SPINK5Q9NQ38 1064 aaPredicted RBP20.53■□□□□ 0.88
A1CF-209ENST00000473480 CAPN15O75808 1086 aa20.49■□□□□ 0.87
A1CF-209ENST00000473480 ATXN8OSP0DMR3 200 aa20.44■□□□□ 0.86
A1CF-209ENST00000473480 ZNF219Q9P2Y4 722 aaPredicted RBP20.38■□□□□ 0.85
A1CF-209ENST00000473480 TRHP20396 242 aaPredicted RBP20.35■□□□□ 0.85
A1CF-209ENST00000473480 ATF5Q9Y2D1 282 aaPredicted RBP20.31■□□□□ 0.84
A1CF-209ENST00000473480 DSG3P32926 999 aa20.17■□□□□ 0.82
A1CF-209ENST00000473480 ABCB7O75027 752 aa20.06■□□□□ 0.8
A1CF-209ENST00000473480 POLA2Q14181 598 aa19.99■□□□□ 0.79
A1CF-209ENST00000473480 ZBTB12Q9Y330 459 aaPredicted RBP19.71■□□□□ 0.75
A1CF-209ENST00000473480 FBLN2P98095 1184 aa19.56■□□□□ 0.72
A1CF-209ENST00000473480 MKRN4PQ13434 485 aaPredicted RBP19.43■□□□□ 0.7
A1CF-209ENST00000473480 OSCARQ8IYS5 282 aa19.3■□□□□ 0.68
A1CF-209ENST00000473480 RBM42Q9BTD8 480 aaKnown RBP19.28■□□□□ 0.68
A1CF-209ENST00000473480 SPDYE2BA6NHP3 402 aa19.14■□□□□ 0.65
A1CF-209ENST00000473480 SPDYE6P0CI01 402 aa19.14■□□□□ 0.65
A1CF-209ENST00000473480 SPDYE2Q495Y8 402 aa19.14■□□□□ 0.65
A1CF-209ENST00000473480 ZNF692Q9BU19 519 aaPredicted RBP19.03■□□□□ 0.64
A1CF-209ENST00000473480 AKT1S1Q96B36 256 aa18.99■□□□□ 0.63
A1CF-209ENST00000473480 SPDYE4A6NLX3 237 aa18.97■□□□□ 0.63
A1CF-209ENST00000473480 SSUH2Q9Y2M2 353 aa18.95■□□□□ 0.62
A1CF-209ENST00000473480 FKBP8Q14318 412 aa18.83■□□□□ 0.6
A1CF-209ENST00000473480 REM2Q8IYK8 340 aaPredicted RBP18.78■□□□□ 0.6
A1CF-209ENST00000473480 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
A1CF-209ENST00000473480 PROM2Q8N271 834 aa18.62■□□□□ 0.57
A1CF-209ENST00000473480 SPDYE1Q8NFV5 336 aaPredicted RBP18.61■□□□□ 0.57
A1CF-209ENST00000473480 PITPNM1O00562 1244 aa18.56■□□□□ 0.56
A1CF-209ENST00000473480 CLEC11AQ9Y240 323 aa18.51■□□□□ 0.55
A1CF-209ENST00000473480 CHRDL2Q6WN34 429 aa18.5■□□□□ 0.55
A1CF-209ENST00000473480 STAG3Q9UJ98 1225 aa18.47■□□□□ 0.55
A1CF-209ENST00000473480 PRR29P0C7W0 189 aa18.34■□□□□ 0.53
A1CF-209ENST00000473480 FBXO3Q9UK99 471 aa18.27■□□□□ 0.52
A1CF-209ENST00000473480 FXR2P51116 673 aaKnown RBP eCLIP18.25■□□□□ 0.51
A1CF-209ENST00000473480 PIP4P2Q8N4L2 257 aa18.22■□□□□ 0.51
A1CF-209ENST00000473480 PRKAR2AP13861 404 aaKnown RBP18.1■□□□□ 0.49
A1CF-209ENST00000473480 POTEHQ6S545 545 aa18.08■□□□□ 0.48
A1CF-209ENST00000473480 CHADLQ6NUI6 762 aa18.04■□□□□ 0.48
A1CF-209ENST00000473480 CREBZFQ9NS37 354 aa18.04■□□□□ 0.48
A1CF-209ENST00000473480 MIER1Q8N108 512 aa18.01■□□□□ 0.47
A1CF-209ENST00000473480 PLEKHG5O94827 1062 aa17.99■□□□□ 0.47
A1CF-209ENST00000473480 PLCD3Q8N3E9 789 aa17.98■□□□□ 0.47
A1CF-209ENST00000473480 VASPP50552 380 aaPredicted RBP17.97■□□□□ 0.47
A1CF-209ENST00000473480 FARP1Q9Y4F1 1045 aaPredicted RBP17.89■□□□□ 0.45
A1CF-209ENST00000473480 ZBTB47Q9UFB7 747 aaPredicted RBP17.83■□□□□ 0.44
A1CF-209ENST00000473480 MNX1P50219 401 aaPredicted RBP17.82■□□□□ 0.44
A1CF-209ENST00000473480 NPM1P06748 294 aaKnown RBP eCLIP17.8■□□□□ 0.44
A1CF-209ENST00000473480 KLHL34Q8N239 644 aa17.72■□□□□ 0.43
A1CF-209ENST00000473480 IFNLR1Q8IU57 520 aaPredicted RBP17.7■□□□□ 0.42
A1CF-209ENST00000473480 HAX1O00165 279 aa17.69■□□□□ 0.42
A1CF-209ENST00000473480 C19orf67A6NJJ6 358 aa17.63■□□□□ 0.41
A1CF-209ENST00000473480 CD44P16070 742 aaKnown RBP17.59■□□□□ 0.41
A1CF-209ENST00000473480 SPOCK2Q92563 424 aa17.55■□□□□ 0.4
A1CF-209ENST00000473480 PAK3O75914 559 aaPredicted RBP17.54■□□□□ 0.4
A1CF-209ENST00000473480 NUBP1P53384 320 aa17.54■□□□□ 0.4
A1CF-209ENST00000473480 RASEFQ8IZ41 740 aa17.49■□□□□ 0.39
A1CF-209ENST00000473480 EVX2Q03828 476 aa17.47■□□□□ 0.39
A1CF-209ENST00000473480 ZRANB1Q9UGI0 708 aa17.46■□□□□ 0.39
A1CF-209ENST00000473480 FAM212AQ96EL1 285 aa17.45■□□□□ 0.38
A1CF-209ENST00000473480 TSPYL2Q9H2G4 693 aaPredicted RBP17.45■□□□□ 0.38
A1CF-209ENST00000473480 DCAF8Q5TAQ9 597 aa17.37■□□□□ 0.37
A1CF-209ENST00000473480 GSE1Q14687 1217 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms