RNA–Protein interactions for RNA: ENST00000472326.2

SGCE-210, Transcript of sarcoglycan epsilon, humanhuman

TSL 2

Gene SGCE, Length 453 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-210ENST00000472326 AEBP2Q6ZN18 517 aaPredicted RBP37.58■■■■□ 3.61
SGCE-210ENST00000472326 CHIC1Q5VXU3 224 aa36.66■■■■□ 3.46
SGCE-210ENST00000472326 PHF23Q9BUL5 403 aaPredicted RBP32.3■■■□□ 2.76
SGCE-210ENST00000472326 SENP3Q9H4L4 574 aaPredicted RBP31.79■■■□□ 2.68
SGCE-210ENST00000472326 PLPPR3Q6T4P5 718 aa29.75■■■□□ 2.35
SGCE-210ENST00000472326 FOXD1Q16676 465 aa29.57■■■□□ 2.32
SGCE-210ENST00000472326 PPP6R1Q9UPN7 881 aa28.52■■■□□ 2.16
SGCE-210ENST00000472326 ADRA2BP18089 450 aa28.5■■■□□ 2.15
SGCE-210ENST00000472326 PIAS4Q8N2W9 510 aaPredicted RBP27.89■■■□□ 2.06
SGCE-210ENST00000472326 MSH5O43196 834 aa27.17■■□□□ 1.94
SGCE-210ENST00000472326 PPP4R3CPQ6ZMV5 832 aa26.26■■□□□ 1.79
SGCE-210ENST00000472326 SCAF1Q9H7N4 1312 aaKnown RBP25.92■■□□□ 1.74
SGCE-210ENST00000472326 MAPK8IP2Q13387 824 aaPredicted RBP25.87■■□□□ 1.73
SGCE-210ENST00000472326 KCNA4P22459 653 aa25.73■■□□□ 1.71
SGCE-210ENST00000472326 NCBP3Q53F19 620 aaKnown RBP25.51■■□□□ 1.67
SGCE-210ENST00000472326 CNKSR2Q8WXI2 1034 aa25.47■■□□□ 1.67
SGCE-210ENST00000472326 DMRT2Q9Y5R5 561 aa25.4■■□□□ 1.66
SGCE-210ENST00000472326 NPM3O75607 178 aaKnown RBP25.23■■□□□ 1.63
SGCE-210ENST00000472326 RNF216Q9NWF9 866 aaPredicted RBP24.96■■□□□ 1.59
SGCE-210ENST00000472326 HOXD11P31277 338 aaPredicted RBP24.86■■□□□ 1.57
SGCE-210ENST00000472326 POTEDQ86YR6 584 aa24.79■■□□□ 1.56
SGCE-210ENST00000472326 SLC4A1APQ9BWU0 796 aaKnown RBP24.46■■□□□ 1.51
SGCE-210ENST00000472326 DCAF8L1A6NGE4 600 aa24.39■■□□□ 1.49
SGCE-210ENST00000472326 DNAJC5BQ9UF47 199 aa24.32■■□□□ 1.48
SGCE-210ENST00000472326 EHMT2Q96KQ7 1210 aa23.88■■□□□ 1.41
SGCE-210ENST00000472326 SLC4A2P04920 1241 aa23.82■■□□□ 1.4
SGCE-210ENST00000472326 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.75■■□□□ 1.39
SGCE-210ENST00000472326 ZBTB22O15209 634 aa23.69■■□□□ 1.38
SGCE-210ENST00000472326 FOXD4L1Q9NU39 408 aa23.61■■□□□ 1.37
SGCE-210ENST00000472326 CSRNP3Q8WYN3 585 aa23.55■■□□□ 1.36
SGCE-210ENST00000472326 U3KPZ7 1027 aaPredicted RBP23.37■■□□□ 1.33
SGCE-210ENST00000472326 RNF39Q9H2S5 420 aa23.32■■□□□ 1.32
SGCE-210ENST00000472326 MYCNP04198 464 aaPredicted RBP23.25■■□□□ 1.31
SGCE-210ENST00000472326 C1QBPQ07021 282 aaKnown RBP23.01■■□□□ 1.27
SGCE-210ENST00000472326 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.97■■□□□ 1.27
SGCE-210ENST00000472326 HNRNPUL2Q1KMD3 747 aaKnown RBP22.97■■□□□ 1.27
SGCE-210ENST00000472326 SAMD1Q6SPF0 538 aaPredicted RBP22.93■■□□□ 1.26
SGCE-210ENST00000472326 SPINK5Q9NQ38 1064 aaPredicted RBP22.76■■□□□ 1.23
SGCE-210ENST00000472326 CACNB1Q02641 598 aaPredicted RBP22.74■■□□□ 1.23
SGCE-210ENST00000472326 ATF5Q9Y2D1 282 aaPredicted RBP22.74■■□□□ 1.23
SGCE-210ENST00000472326 ATXN8OSP0DMR3 200 aa22.7■■□□□ 1.22
SGCE-210ENST00000472326 APLP2Q06481 763 aa22.7■■□□□ 1.22
SGCE-210ENST00000472326 CAPN15O75808 1086 aa22.64■■□□□ 1.21
SGCE-210ENST00000472326 TRHP20396 242 aaPredicted RBP22.56■■□□□ 1.2
SGCE-210ENST00000472326 ZNF219Q9P2Y4 722 aaPredicted RBP22.45■■□□□ 1.18
SGCE-210ENST00000472326 ABCB7O75027 752 aa22.26■■□□□ 1.15
SGCE-210ENST00000472326 DSG3P32926 999 aa22.23■■□□□ 1.15
SGCE-210ENST00000472326 POLA2Q14181 598 aa22.17■■□□□ 1.14
SGCE-210ENST00000472326 MKRN4PQ13434 485 aaPredicted RBP21.72■■□□□ 1.07
SGCE-210ENST00000472326 ZBTB12Q9Y330 459 aaPredicted RBP21.69■■□□□ 1.06
SGCE-210ENST00000472326 FBLN2P98095 1184 aa21.67■■□□□ 1.06
SGCE-210ENST00000472326 OSCARQ8IYS5 282 aa21.44■■□□□ 1.02
SGCE-210ENST00000472326 FKBP8Q14318 412 aa21.3■■□□□ 1
SGCE-210ENST00000472326 SPDYE4A6NLX3 237 aa21.21■□□□□ 0.99
SGCE-210ENST00000472326 SPDYE2BA6NHP3 402 aa21.15■□□□□ 0.98
SGCE-210ENST00000472326 SPDYE6P0CI01 402 aa21.15■□□□□ 0.98
SGCE-210ENST00000472326 SPDYE2Q495Y8 402 aa21.15■□□□□ 0.98
SGCE-210ENST00000472326 ZNF692Q9BU19 519 aaPredicted RBP21.12■□□□□ 0.97
SGCE-210ENST00000472326 RBM42Q9BTD8 480 aaKnown RBP21.1■□□□□ 0.97
SGCE-210ENST00000472326 SSUH2Q9Y2M2 353 aa21.01■□□□□ 0.95
SGCE-210ENST00000472326 PABPN1Q86U42 306 aaKnown RBP eCLIP20.87■□□□□ 0.93
SGCE-210ENST00000472326 AKT1S1Q96B36 256 aa20.87■□□□□ 0.93
SGCE-210ENST00000472326 PROM2Q8N271 834 aa20.81■□□□□ 0.92
SGCE-210ENST00000472326 REM2Q8IYK8 340 aaPredicted RBP20.73■□□□□ 0.91
SGCE-210ENST00000472326 SPDYE1Q8NFV5 336 aaPredicted RBP20.53■□□□□ 0.88
SGCE-210ENST00000472326 CLEC11AQ9Y240 323 aa20.53■□□□□ 0.88
SGCE-210ENST00000472326 PITPNM1O00562 1244 aa20.51■□□□□ 0.87
SGCE-210ENST00000472326 STAG3Q9UJ98 1225 aa20.42■□□□□ 0.86
SGCE-210ENST00000472326 FBXO3Q9UK99 471 aa20.42■□□□□ 0.86
SGCE-210ENST00000472326 PRR29P0C7W0 189 aa20.29■□□□□ 0.84
SGCE-210ENST00000472326 CHRDL2Q6WN34 429 aa20.29■□□□□ 0.84
SGCE-210ENST00000472326 VASPP50552 380 aaPredicted RBP20.22■□□□□ 0.83
SGCE-210ENST00000472326 MIER1Q8N108 512 aa20.12■□□□□ 0.81
SGCE-210ENST00000472326 PLCD3Q8N3E9 789 aa20.1■□□□□ 0.81
SGCE-210ENST00000472326 FXR2P51116 673 aaKnown RBP eCLIP20.07■□□□□ 0.8
SGCE-210ENST00000472326 PIP4P2Q8N4L2 257 aa20.06■□□□□ 0.8
SGCE-210ENST00000472326 CREBZFQ9NS37 354 aa20.06■□□□□ 0.8
SGCE-210ENST00000472326 CHADLQ6NUI6 762 aa20.05■□□□□ 0.8
SGCE-210ENST00000472326 PRKAR2AP13861 404 aaKnown RBP19.99■□□□□ 0.79
SGCE-210ENST00000472326 IFNLR1Q8IU57 520 aaPredicted RBP19.97■□□□□ 0.79
SGCE-210ENST00000472326 PLEKHG5O94827 1062 aa19.94■□□□□ 0.78
SGCE-210ENST00000472326 KLHL34Q8N239 644 aa19.89■□□□□ 0.77
SGCE-210ENST00000472326 MNX1P50219 401 aaPredicted RBP19.85■□□□□ 0.77
SGCE-210ENST00000472326 FARP1Q9Y4F1 1045 aaPredicted RBP19.79■□□□□ 0.76
SGCE-210ENST00000472326 ZBTB47Q9UFB7 747 aaPredicted RBP19.77■□□□□ 0.76
SGCE-210ENST00000472326 SPOCK2Q92563 424 aa19.69■□□□□ 0.74
SGCE-210ENST00000472326 NPM1P06748 294 aaKnown RBP eCLIP19.66■□□□□ 0.74
SGCE-210ENST00000472326 POTEHQ6S545 545 aa19.64■□□□□ 0.73
SGCE-210ENST00000472326 NUBP1P53384 320 aa19.6■□□□□ 0.73
SGCE-210ENST00000472326 RASEFQ8IZ41 740 aa19.54■□□□□ 0.72
SGCE-210ENST00000472326 TSPYL2Q9H2G4 693 aaPredicted RBP19.45■□□□□ 0.7
SGCE-210ENST00000472326 CIZ1Q9ULV3 898 aaPredicted RBP19.43■□□□□ 0.7
SGCE-210ENST00000472326 CD44P16070 742 aaKnown RBP19.42■□□□□ 0.7
SGCE-210ENST00000472326 DCAF8Q5TAQ9 597 aa19.42■□□□□ 0.7
SGCE-210ENST00000472326 HAX1O00165 279 aa19.41■□□□□ 0.7
SGCE-210ENST00000472326 FAM212AQ96EL1 285 aa19.41■□□□□ 0.7
SGCE-210ENST00000472326 RTN4Q9NQC3 1192 aaKnown RBP19.41■□□□□ 0.7
SGCE-210ENST00000472326 C19orf67A6NJJ6 358 aa19.39■□□□□ 0.69
SGCE-210ENST00000472326 AMER1Q5JTC6 1135 aaPredicted RBP19.35■□□□□ 0.69
SGCE-210ENST00000472326 PAK3O75914 559 aaPredicted RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms