RNA–Protein interactions for RNA: ENST00000471474.5

SEMA3A-206, Transcript of semaphorin 3A, humanhuman

TSL 5

Gene SEMA3A, Length 688 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-206ENST00000471474 AEBP2Q6ZN18 517 aaPredicted RBP26.05■■□□□ 1.76
SEMA3A-206ENST00000471474 CHIC1Q5VXU3 224 aa25.6■■□□□ 1.69
SEMA3A-206ENST00000471474 PHF23Q9BUL5 403 aaPredicted RBP22.4■■□□□ 1.18
SEMA3A-206ENST00000471474 SENP3Q9H4L4 574 aaPredicted RBP22.34■■□□□ 1.17
SEMA3A-206ENST00000471474 PLPPR3Q6T4P5 718 aa20.94■□□□□ 0.94
SEMA3A-206ENST00000471474 FOXD1Q16676 465 aa20.6■□□□□ 0.89
SEMA3A-206ENST00000471474 ADRA2BP18089 450 aa19.87■□□□□ 0.77
SEMA3A-206ENST00000471474 PPP6R1Q9UPN7 881 aa19.78■□□□□ 0.76
SEMA3A-206ENST00000471474 PIAS4Q8N2W9 510 aaPredicted RBP19.59■□□□□ 0.73
SEMA3A-206ENST00000471474 MSH5O43196 834 aa19.15■□□□□ 0.66
SEMA3A-206ENST00000471474 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
SEMA3A-206ENST00000471474 PPP4R3CPQ6ZMV5 832 aa18.4■□□□□ 0.54
SEMA3A-206ENST00000471474 NCBP3Q53F19 620 aaKnown RBP18.1■□□□□ 0.49
SEMA3A-206ENST00000471474 MAPK8IP2Q13387 824 aaPredicted RBP17.98■□□□□ 0.47
SEMA3A-206ENST00000471474 KCNA4P22459 653 aa17.95■□□□□ 0.46
SEMA3A-206ENST00000471474 POTEDQ86YR6 584 aa17.93■□□□□ 0.46
SEMA3A-206ENST00000471474 CNKSR2Q8WXI2 1034 aa17.91■□□□□ 0.46
SEMA3A-206ENST00000471474 DMRT2Q9Y5R5 561 aa17.75■□□□□ 0.43
SEMA3A-206ENST00000471474 NPM3O75607 178 aaKnown RBP17.61■□□□□ 0.41
SEMA3A-206ENST00000471474 RNF216Q9NWF9 866 aaPredicted RBP17.52■□□□□ 0.4
SEMA3A-206ENST00000471474 HOXD11P31277 338 aaPredicted RBP17.35■□□□□ 0.37
SEMA3A-206ENST00000471474 DCAF8L1A6NGE4 600 aa17.27■□□□□ 0.36
SEMA3A-206ENST00000471474 SLC4A1APQ9BWU0 796 aaKnown RBP17.23■□□□□ 0.35
SEMA3A-206ENST00000471474 DNAJC5BQ9UF47 199 aa16.94■□□□□ 0.3
SEMA3A-206ENST00000471474 EHMT2Q96KQ7 1210 aa16.81■□□□□ 0.28
SEMA3A-206ENST00000471474 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.28
SEMA3A-206ENST00000471474 FOXD4L1Q9NU39 408 aa16.59■□□□□ 0.25
SEMA3A-206ENST00000471474 SLC4A2P04920 1241 aa16.53■□□□□ 0.24
SEMA3A-206ENST00000471474 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
SEMA3A-206ENST00000471474 ZBTB22O15209 634 aa16.38■□□□□ 0.21
SEMA3A-206ENST00000471474 MYCNP04198 464 aaPredicted RBP16.38■□□□□ 0.21
SEMA3A-206ENST00000471474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
SEMA3A-206ENST00000471474 HNRNPUL2Q1KMD3 747 aaKnown RBP16.35■□□□□ 0.21
SEMA3A-206ENST00000471474 U3KPZ7 1027 aaPredicted RBP16.3■□□□□ 0.2
SEMA3A-206ENST00000471474 RNF39Q9H2S5 420 aa16.27■□□□□ 0.2
SEMA3A-206ENST00000471474 APLP2Q06481 763 aa16.24■□□□□ 0.19
SEMA3A-206ENST00000471474 SAMD1Q6SPF0 538 aaPredicted RBP16.23■□□□□ 0.19
SEMA3A-206ENST00000471474 C1QBPQ07021 282 aaKnown RBP16.19■□□□□ 0.18
SEMA3A-206ENST00000471474 CACNB1Q02641 598 aaPredicted RBP16.03■□□□□ 0.16
SEMA3A-206ENST00000471474 ATXN8OSP0DMR3 200 aa16■□□□□ 0.15
SEMA3A-206ENST00000471474 CAPN15O75808 1086 aa15.99■□□□□ 0.15
SEMA3A-206ENST00000471474 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
SEMA3A-206ENST00000471474 ZNF219Q9P2Y4 722 aaPredicted RBP15.88■□□□□ 0.13
SEMA3A-206ENST00000471474 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
SEMA3A-206ENST00000471474 ATF5Q9Y2D1 282 aaPredicted RBP15.76■□□□□ 0.11
SEMA3A-206ENST00000471474 ABCB7O75027 752 aa15.6■□□□□ 0.09
SEMA3A-206ENST00000471474 POLA2Q14181 598 aa15.58■□□□□ 0.08
SEMA3A-206ENST00000471474 DSG3P32926 999 aa15.51■□□□□ 0.07
SEMA3A-206ENST00000471474 ZBTB12Q9Y330 459 aaPredicted RBP15.42■□□□□ 0.06
SEMA3A-206ENST00000471474 FBLN2P98095 1184 aa15.41■□□□□ 0.06
SEMA3A-206ENST00000471474 MKRN4PQ13434 485 aaPredicted RBP15.06■□□□□ 0
SEMA3A-206ENST00000471474 FKBP8Q14318 412 aa15□□□□□ -0.01
SEMA3A-206ENST00000471474 OSCARQ8IYS5 282 aa15□□□□□ -0.01
SEMA3A-206ENST00000471474 RBM42Q9BTD8 480 aaKnown RBP14.97□□□□□ -0.01
SEMA3A-206ENST00000471474 SPDYE4A6NLX3 237 aa14.95□□□□□ -0.02
SEMA3A-206ENST00000471474 ZNF692Q9BU19 519 aaPredicted RBP14.94□□□□□ -0.02
SEMA3A-206ENST00000471474 SPDYE2BA6NHP3 402 aa14.91□□□□□ -0.02
SEMA3A-206ENST00000471474 SPDYE6P0CI01 402 aa14.91□□□□□ -0.02
SEMA3A-206ENST00000471474 SPDYE2Q495Y8 402 aa14.91□□□□□ -0.02
SEMA3A-206ENST00000471474 AKT1S1Q96B36 256 aa14.7□□□□□ -0.06
SEMA3A-206ENST00000471474 PABPN1Q86U42 306 aaKnown RBP eCLIP14.69□□□□□ -0.06
SEMA3A-206ENST00000471474 SSUH2Q9Y2M2 353 aa14.67□□□□□ -0.06
SEMA3A-206ENST00000471474 FBXO3Q9UK99 471 aa14.56□□□□□ -0.08
SEMA3A-206ENST00000471474 STAG3Q9UJ98 1225 aa14.53□□□□□ -0.08
SEMA3A-206ENST00000471474 CLEC11AQ9Y240 323 aa14.53□□□□□ -0.08
SEMA3A-206ENST00000471474 REM2Q8IYK8 340 aaPredicted RBP14.52□□□□□ -0.09
SEMA3A-206ENST00000471474 SPDYE1Q8NFV5 336 aaPredicted RBP14.52□□□□□ -0.09
SEMA3A-206ENST00000471474 PROM2Q8N271 834 aa14.45□□□□□ -0.1
SEMA3A-206ENST00000471474 PRR29P0C7W0 189 aa14.38□□□□□ -0.11
SEMA3A-206ENST00000471474 PLEKHG5O94827 1062 aa14.37□□□□□ -0.11
SEMA3A-206ENST00000471474 PITPNM1O00562 1244 aa14.34□□□□□ -0.11
SEMA3A-206ENST00000471474 PLCD3Q8N3E9 789 aa14.29□□□□□ -0.12
SEMA3A-206ENST00000471474 MIER1Q8N108 512 aa14.28□□□□□ -0.12
SEMA3A-206ENST00000471474 CHRDL2Q6WN34 429 aa14.24□□□□□ -0.13
SEMA3A-206ENST00000471474 VASPP50552 380 aaPredicted RBP14.22□□□□□ -0.13
SEMA3A-206ENST00000471474 KLHL34Q8N239 644 aa14.18□□□□□ -0.14
SEMA3A-206ENST00000471474 ZBTB47Q9UFB7 747 aaPredicted RBP14.15□□□□□ -0.14
SEMA3A-206ENST00000471474 PRKAR2AP13861 404 aaKnown RBP14.06□□□□□ -0.16
SEMA3A-206ENST00000471474 CHADLQ6NUI6 762 aa14.03□□□□□ -0.16
SEMA3A-206ENST00000471474 FXR2P51116 673 aaKnown RBP eCLIP14.02□□□□□ -0.17
SEMA3A-206ENST00000471474 PIP4P2Q8N4L2 257 aa14.01□□□□□ -0.17
SEMA3A-206ENST00000471474 NPM1P06748 294 aaKnown RBP eCLIP14□□□□□ -0.17
SEMA3A-206ENST00000471474 CREBZFQ9NS37 354 aa14□□□□□ -0.17
SEMA3A-206ENST00000471474 POTEHQ6S545 545 aa13.99□□□□□ -0.17
SEMA3A-206ENST00000471474 IFNLR1Q8IU57 520 aaPredicted RBP13.95□□□□□ -0.18
SEMA3A-206ENST00000471474 SPOCK2Q92563 424 aa13.92□□□□□ -0.18
SEMA3A-206ENST00000471474 FARP1Q9Y4F1 1045 aaPredicted RBP13.9□□□□□ -0.18
SEMA3A-206ENST00000471474 PAK3O75914 559 aaPredicted RBP13.84□□□□□ -0.19
SEMA3A-206ENST00000471474 CIZ1Q9ULV3 898 aaPredicted RBP13.8□□□□□ -0.2
SEMA3A-206ENST00000471474 DCAF8Q5TAQ9 597 aa13.79□□□□□ -0.2
SEMA3A-206ENST00000471474 FAM212AQ96EL1 285 aa13.79□□□□□ -0.2
SEMA3A-206ENST00000471474 MNX1P50219 401 aaPredicted RBP13.76□□□□□ -0.21
SEMA3A-206ENST00000471474 AMER1Q5JTC6 1135 aaPredicted RBP13.76□□□□□ -0.21
SEMA3A-206ENST00000471474 GSE1Q14687 1217 aa13.74□□□□□ -0.21
SEMA3A-206ENST00000471474 HAX1O00165 279 aa13.73□□□□□ -0.21
SEMA3A-206ENST00000471474 TSPYL2Q9H2G4 693 aaPredicted RBP13.72□□□□□ -0.21
SEMA3A-206ENST00000471474 CD44P16070 742 aaKnown RBP13.68□□□□□ -0.22
SEMA3A-206ENST00000471474 NUBP1P53384 320 aa13.67□□□□□ -0.22
SEMA3A-206ENST00000471474 RASEFQ8IZ41 740 aa13.65□□□□□ -0.22
SEMA3A-206ENST00000471474 ZRANB1Q9UGI0 708 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms