RNA–Protein interactions for RNA: ENST00000470243.5

SRRM1-208, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 5

Gene SRRM1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-208ENST00000470243 AEBP2Q6ZN18 517 aaPredicted RBP21.83■■□□□ 1.09
SRRM1-208ENST00000470243 CHIC1Q5VXU3 224 aa20.42■□□□□ 0.86
SRRM1-208ENST00000470243 SENP3Q9H4L4 574 aaPredicted RBP18.59■□□□□ 0.57
SRRM1-208ENST00000470243 PHF23Q9BUL5 403 aaPredicted RBP18.37■□□□□ 0.53
SRRM1-208ENST00000470243 FOXD1Q16676 465 aa17.42■□□□□ 0.38
SRRM1-208ENST00000470243 POTEDQ86YR6 584 aa16.48■□□□□ 0.23
SRRM1-208ENST00000470243 MSH5O43196 834 aa16.34■□□□□ 0.21
SRRM1-208ENST00000470243 PIAS4Q8N2W9 510 aaPredicted RBP16.22■□□□□ 0.19
SRRM1-208ENST00000470243 PLPPR3Q6T4P5 718 aa16.18■□□□□ 0.18
SRRM1-208ENST00000470243 PPP6R1Q9UPN7 881 aa16.12■□□□□ 0.17
SRRM1-208ENST00000470243 ADRA2BP18089 450 aa16.06■□□□□ 0.16
SRRM1-208ENST00000470243 MAPK8IP2Q13387 824 aaPredicted RBP14.86□□□□□ -0.03
SRRM1-208ENST00000470243 DMRT2Q9Y5R5 561 aa14.7□□□□□ -0.06
SRRM1-208ENST00000470243 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
SRRM1-208ENST00000470243 CACNB1Q02641 598 aaPredicted RBP14.27□□□□□ -0.13
SRRM1-208ENST00000470243 DCAF8L1A6NGE4 600 aa14.24□□□□□ -0.13
SRRM1-208ENST00000470243 PPP4R3CPQ6ZMV5 832 aa14.19□□□□□ -0.14
SRRM1-208ENST00000470243 HOXD11P31277 338 aaPredicted RBP14.04□□□□□ -0.16
SRRM1-208ENST00000470243 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
SRRM1-208ENST00000470243 RNF39Q9H2S5 420 aa13.94□□□□□ -0.18
SRRM1-208ENST00000470243 RNF216Q9NWF9 866 aaPredicted RBP13.87□□□□□ -0.19
SRRM1-208ENST00000470243 C1QBPQ07021 282 aaKnown RBP13.7□□□□□ -0.22
SRRM1-208ENST00000470243 DNAJC5BQ9UF47 199 aa13.52□□□□□ -0.25
SRRM1-208ENST00000470243 KCNA4P22459 653 aa13.51□□□□□ -0.25
SRRM1-208ENST00000470243 NCBP3Q53F19 620 aaKnown RBP13.51□□□□□ -0.25
SRRM1-208ENST00000470243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.46□□□□□ -0.252e-7■■■□□ 15.6
SRRM1-208ENST00000470243 NPM3O75607 178 aaKnown RBP13.36□□□□□ -0.27
SRRM1-208ENST00000470243 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
SRRM1-208ENST00000470243 SPINK5Q9NQ38 1064 aaPredicted RBP13.06□□□□□ -0.32
SRRM1-208ENST00000470243 CAPN15O75808 1086 aa13.05□□□□□ -0.32
SRRM1-208ENST00000470243 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
SRRM1-208ENST00000470243 DSG3P32926 999 aa12.98□□□□□ -0.33
SRRM1-208ENST00000470243 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
SRRM1-208ENST00000470243 POTEHQ6S545 545 aa12.86□□□□□ -0.35
SRRM1-208ENST00000470243 SLC4A2P04920 1241 aa12.84□□□□□ -0.35
SRRM1-208ENST00000470243 TRHP20396 242 aaPredicted RBP12.79□□□□□ -0.36
SRRM1-208ENST00000470243 ABCB7O75027 752 aa12.75□□□□□ -0.37
SRRM1-208ENST00000470243 ZNF219Q9P2Y4 722 aaPredicted RBP12.66□□□□□ -0.38
SRRM1-208ENST00000470243 APLP2Q06481 763 aa12.64□□□□□ -0.39
SRRM1-208ENST00000470243 CSRNP3Q8WYN3 585 aa12.64□□□□□ -0.39
SRRM1-208ENST00000470243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
SRRM1-208ENST00000470243 HNRNPUL2Q1KMD3 747 aaKnown RBP12.58□□□□□ -0.4
SRRM1-208ENST00000470243 SAMD1Q6SPF0 538 aaPredicted RBP12.52□□□□□ -0.41
SRRM1-208ENST00000470243 ZBTB22O15209 634 aa12.47□□□□□ -0.41
SRRM1-208ENST00000470243 POLA2Q14181 598 aa12.36□□□□□ -0.43
SRRM1-208ENST00000470243 RBM42Q9BTD8 480 aaKnown RBP12.35□□□□□ -0.43
SRRM1-208ENST00000470243 MYCNP04198 464 aaPredicted RBP12.33□□□□□ -0.44
SRRM1-208ENST00000470243 FOXD4L1Q9NU39 408 aa12.3□□□□□ -0.44
SRRM1-208ENST00000470243 CHRDL2Q6WN34 429 aa12.24□□□□□ -0.45
SRRM1-208ENST00000470243 ATF5Q9Y2D1 282 aaPredicted RBP12.15□□□□□ -0.46
SRRM1-208ENST00000470243 AKT1S1Q96B36 256 aa12.02□□□□□ -0.49
SRRM1-208ENST00000470243 ZBTB12Q9Y330 459 aaPredicted RBP11.98□□□□□ -0.49
SRRM1-208ENST00000470243 OSCARQ8IYS5 282 aa11.97□□□□□ -0.49
SRRM1-208ENST00000470243 REM2Q8IYK8 340 aaPredicted RBP11.95□□□□□ -0.5
SRRM1-208ENST00000470243 SP7Q8TDD2 431 aaPredicted RBP11.91□□□□□ -0.5
SRRM1-208ENST00000470243 PIP4P2Q8N4L2 257 aa11.89□□□□□ -0.51
SRRM1-208ENST00000470243 PITPNM1O00562 1244 aa11.83□□□□□ -0.52
SRRM1-208ENST00000470243 HAX1O00165 279 aa11.79□□□□□ -0.52
SRRM1-208ENST00000470243 ATXN8OSP0DMR3 200 aa11.78□□□□□ -0.52
SRRM1-208ENST00000470243 FXR2P51116 673 aaKnown RBP eCLIP11.74□□□□□ -0.53
SRRM1-208ENST00000470243 EVX2Q03828 476 aa11.64□□□□□ -0.55
SRRM1-208ENST00000470243 SPDYE2BA6NHP3 402 aa11.62□□□□□ -0.55
SRRM1-208ENST00000470243 SPDYE6P0CI01 402 aa11.62□□□□□ -0.55
SRRM1-208ENST00000470243 FBLN2P98095 1184 aa11.62□□□□□ -0.55
SRRM1-208ENST00000470243 SPDYE2Q495Y8 402 aa11.62□□□□□ -0.55
SRRM1-208ENST00000470243 CLEC11AQ9Y240 323 aa11.59□□□□□ -0.55
SRRM1-208ENST00000470243 MKRN4PQ13434 485 aaPredicted RBP11.55□□□□□ -0.56
SRRM1-208ENST00000470243 PRKAR2AP13861 404 aaKnown RBP11.54□□□□□ -0.56
SRRM1-208ENST00000470243 ZNF692Q9BU19 519 aaPredicted RBP11.5□□□□□ -0.57
SRRM1-208ENST00000470243 SPDYE1Q8NFV5 336 aaPredicted RBP11.49□□□□□ -0.57
SRRM1-208ENST00000470243 SSUH2Q9Y2M2 353 aa11.44□□□□□ -0.58
SRRM1-208ENST00000470243 FKBP8Q14318 412 aa11.41□□□□□ -0.58
SRRM1-208ENST00000470243 CHADLQ6NUI6 762 aa11.41□□□□□ -0.58
SRRM1-208ENST00000470243 C19orf67A6NJJ6 358 aa11.38□□□□□ -0.59
SRRM1-208ENST00000470243 GABBR2O75899 941 aa11.32□□□□□ -0.6
SRRM1-208ENST00000470243 PABPN1Q86U42 306 aaKnown RBP eCLIP11.32□□□□□ -0.6
SRRM1-208ENST00000470243 PRR29P0C7W0 189 aa11.31□□□□□ -0.6
SRRM1-208ENST00000470243 LHX8Q68G74 356 aa11.19□□□□□ -0.62
SRRM1-208ENST00000470243 CD44P16070 742 aaKnown RBP11.15□□□□□ -0.62
SRRM1-208ENST00000470243 FARP1Q9Y4F1 1045 aaPredicted RBP11.14□□□□□ -0.63
SRRM1-208ENST00000470243 POTEIP0CG38 1075 aa11.09□□□□□ -0.63
SRRM1-208ENST00000470243 SPDYE4A6NLX3 237 aa11.04□□□□□ -0.64
SRRM1-208ENST00000470243 RTN4Q9NQC3 1192 aaKnown RBP11.02□□□□□ -0.65
SRRM1-208ENST00000470243 AMER1Q5JTC6 1135 aaPredicted RBP10.97□□□□□ -0.65
SRRM1-208ENST00000470243 DCBLD2Q96PD2 775 aa10.97□□□□□ -0.65
SRRM1-208ENST00000470243 ZRANB1Q9UGI0 708 aa10.97□□□□□ -0.65
SRRM1-208ENST00000470243 CREBZFQ9NS37 354 aa10.95□□□□□ -0.66
SRRM1-208ENST00000470243 CLCN6P51797 869 aa10.91□□□□□ -0.66
SRRM1-208ENST00000470243 ZNF579Q8NAF0 562 aaKnown RBP10.91□□□□□ -0.66
SRRM1-208ENST00000470243 PROM2Q8N271 834 aa10.9□□□□□ -0.66
SRRM1-208ENST00000470243 STAG3Q9UJ98 1225 aa10.89□□□□□ -0.67
SRRM1-208ENST00000470243 GALR2O43603 387 aaPredicted RBP10.87□□□□□ -0.67
SRRM1-208ENST00000470243 FBXO3Q9UK99 471 aa10.83□□□□□ -0.68
SRRM1-208ENST00000470243 PHF12Q96QT6 1004 aa10.81□□□□□ -0.68
SRRM1-208ENST00000470243 PAK3O75914 559 aaPredicted RBP10.77□□□□□ -0.69
SRRM1-208ENST00000470243 PLSCR2Q9NRY7 297 aa10.77□□□□□ -0.69
SRRM1-208ENST00000470243 POTEB2H3BUK9 544 aa10.74□□□□□ -0.69
SRRM1-208ENST00000470243 VASPP50552 380 aaPredicted RBP10.74□□□□□ -0.69
SRRM1-208ENST00000470243 OTUD5Q96G74 571 aa10.73□□□□□ -0.69
SRRM1-208ENST00000470243 MNX1P50219 401 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms