RNA–Protein interactions for RNA: ENST00000470094.1

BRCA2-202, Transcript of BRCA2, DNA repair associated, humanhuman

TSL 5

Gene BRCA2, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA2-202ENST00000470094 AEBP2Q6ZN18 517 aaPredicted RBP21.76■■□□□ 1.07
BRCA2-202ENST00000470094 CHIC1Q5VXU3 224 aa21.29■■□□□ 1
BRCA2-202ENST00000470094 PHF23Q9BUL5 403 aaPredicted RBP18.68■□□□□ 0.58
BRCA2-202ENST00000470094 SENP3Q9H4L4 574 aaPredicted RBP18.53■□□□□ 0.56
BRCA2-202ENST00000470094 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
BRCA2-202ENST00000470094 FOXD1Q16676 465 aa17.16■□□□□ 0.34
BRCA2-202ENST00000470094 ADRA2BP18089 450 aa16.49■□□□□ 0.23
BRCA2-202ENST00000470094 PPP6R1Q9UPN7 881 aa16.49■□□□□ 0.23
BRCA2-202ENST00000470094 PIAS4Q8N2W9 510 aaPredicted RBP16.22■□□□□ 0.19
BRCA2-202ENST00000470094 MSH5O43196 834 aa15.87■□□□□ 0.13
BRCA2-202ENST00000470094 POTEDQ86YR6 584 aa15.85■□□□□ 0.13
BRCA2-202ENST00000470094 PPP4R3CPQ6ZMV5 832 aa15.23■□□□□ 0.03
BRCA2-202ENST00000470094 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
BRCA2-202ENST00000470094 MAPK8IP2Q13387 824 aaPredicted RBP14.95□□□□□ -0.02
BRCA2-202ENST00000470094 KCNA4P22459 653 aa14.87□□□□□ -0.03
BRCA2-202ENST00000470094 NCBP3Q53F19 620 aaKnown RBP14.87□□□□□ -0.03
BRCA2-202ENST00000470094 CNKSR2Q8WXI2 1034 aa14.82□□□□□ -0.04
BRCA2-202ENST00000470094 DMRT2Q9Y5R5 561 aa14.78□□□□□ -0.04
BRCA2-202ENST00000470094 NPM3O75607 178 aaKnown RBP14.61□□□□□ -0.07
BRCA2-202ENST00000470094 RNF216Q9NWF9 866 aaPredicted RBP14.52□□□□□ -0.09
BRCA2-202ENST00000470094 HOXD11P31277 338 aaPredicted RBP14.46□□□□□ -0.09
BRCA2-202ENST00000470094 SLC4A1APQ9BWU0 796 aaKnown RBP14.18□□□□□ -0.14
BRCA2-202ENST00000470094 DCAF8L1A6NGE4 600 aa14.17□□□□□ -0.14
BRCA2-202ENST00000470094 DNAJC5BQ9UF47 199 aa14.17□□□□□ -0.14
BRCA2-202ENST00000470094 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.82□□□□□ -0.2
BRCA2-202ENST00000470094 SLC4A2P04920 1241 aa13.78□□□□□ -0.2
BRCA2-202ENST00000470094 EHMT2Q96KQ7 1210 aa13.77□□□□□ -0.21
BRCA2-202ENST00000470094 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
BRCA2-202ENST00000470094 FOXD4L1Q9NU39 408 aa13.72□□□□□ -0.21
BRCA2-202ENST00000470094 ZBTB22O15209 634 aa13.65□□□□□ -0.22
BRCA2-202ENST00000470094 CSRNP3Q8WYN3 585 aa13.59□□□□□ -0.23
BRCA2-202ENST00000470094 RNF39Q9H2S5 420 aa13.57□□□□□ -0.24
BRCA2-202ENST00000470094 U3KPZ7 1027 aaPredicted RBP13.56□□□□□ -0.24
BRCA2-202ENST00000470094 MYCNP04198 464 aaPredicted RBP13.52□□□□□ -0.25
BRCA2-202ENST00000470094 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.44□□□□□ -0.26
BRCA2-202ENST00000470094 HNRNPUL2Q1KMD3 747 aaKnown RBP13.44□□□□□ -0.26
BRCA2-202ENST00000470094 C1QBPQ07021 282 aaKnown RBP13.43□□□□□ -0.26
BRCA2-202ENST00000470094 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
BRCA2-202ENST00000470094 APLP2Q06481 763 aa13.31□□□□□ -0.28
BRCA2-202ENST00000470094 ATXN8OSP0DMR3 200 aa13.23□□□□□ -0.29
BRCA2-202ENST00000470094 SPINK5Q9NQ38 1064 aaPredicted RBP13.17□□□□□ -0.3
BRCA2-202ENST00000470094 CAPN15O75808 1086 aa13.16□□□□□ -0.3
BRCA2-202ENST00000470094 ATF5Q9Y2D1 282 aaPredicted RBP13.11□□□□□ -0.31
BRCA2-202ENST00000470094 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
BRCA2-202ENST00000470094 TRHP20396 242 aaPredicted RBP13.09□□□□□ -0.31
BRCA2-202ENST00000470094 DSG3P32926 999 aa12.91□□□□□ -0.34
BRCA2-202ENST00000470094 ABCB7O75027 752 aa12.9□□□□□ -0.34
BRCA2-202ENST00000470094 POLA2Q14181 598 aa12.87□□□□□ -0.35
BRCA2-202ENST00000470094 ZBTB12Q9Y330 459 aaPredicted RBP12.7□□□□□ -0.38
BRCA2-202ENST00000470094 FBLN2P98095 1184 aa12.64□□□□□ -0.39
BRCA2-202ENST00000470094 MKRN4PQ13434 485 aaPredicted RBP12.55□□□□□ -0.4
BRCA2-202ENST00000470094 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
BRCA2-202ENST00000470094 POTEHQ6S545 545 aa12.4□□□□□ -0.42
BRCA2-202ENST00000470094 RBM42Q9BTD8 480 aaKnown RBP12.35□□□□□ -0.43
BRCA2-202ENST00000470094 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
BRCA2-202ENST00000470094 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
BRCA2-202ENST00000470094 FKBP8Q14318 412 aa12.32□□□□□ -0.44
BRCA2-202ENST00000470094 SPDYE2Q495Y8 402 aa12.32□□□□□ -0.44
BRCA2-202ENST00000470094 SPDYE4A6NLX3 237 aa12.31□□□□□ -0.44
BRCA2-202ENST00000470094 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
BRCA2-202ENST00000470094 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
BRCA2-202ENST00000470094 AKT1S1Q96B36 256 aa12.17□□□□□ -0.46
BRCA2-202ENST00000470094 PABPN1Q86U42 306 aaKnown RBP eCLIP12.11□□□□□ -0.47
BRCA2-202ENST00000470094 PROM2Q8N271 834 aa12.06□□□□□ -0.48
BRCA2-202ENST00000470094 REM2Q8IYK8 340 aaPredicted RBP12.04□□□□□ -0.48
BRCA2-202ENST00000470094 SPDYE1Q8NFV5 336 aaPredicted RBP11.98□□□□□ -0.49
BRCA2-202ENST00000470094 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
BRCA2-202ENST00000470094 CLEC11AQ9Y240 323 aa11.92□□□□□ -0.5
BRCA2-202ENST00000470094 FBXO3Q9UK99 471 aa11.91□□□□□ -0.5
BRCA2-202ENST00000470094 PITPNM1O00562 1244 aa11.9□□□□□ -0.5
BRCA2-202ENST00000470094 PRR29P0C7W0 189 aa11.81□□□□□ -0.52
BRCA2-202ENST00000470094 CHRDL2Q6WN34 429 aa11.81□□□□□ -0.52
BRCA2-202ENST00000470094 VASPP50552 380 aaPredicted RBP11.72□□□□□ -0.53
BRCA2-202ENST00000470094 MIER1Q8N108 512 aa11.68□□□□□ -0.54
BRCA2-202ENST00000470094 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
BRCA2-202ENST00000470094 PLEKHG5O94827 1062 aa11.67□□□□□ -0.54
BRCA2-202ENST00000470094 FXR2P51116 673 aaKnown RBP eCLIP11.67□□□□□ -0.54
BRCA2-202ENST00000470094 PIP4P2Q8N4L2 257 aa11.65□□□□□ -0.54
BRCA2-202ENST00000470094 PRKAR2AP13861 404 aaKnown RBP11.62□□□□□ -0.55
BRCA2-202ENST00000470094 CREBZFQ9NS37 354 aa11.62□□□□□ -0.55
BRCA2-202ENST00000470094 CHADLQ6NUI6 762 aa11.6□□□□□ -0.55
BRCA2-202ENST00000470094 ZBTB47Q9UFB7 747 aaPredicted RBP11.57□□□□□ -0.56
BRCA2-202ENST00000470094 KLHL34Q8N239 644 aa11.55□□□□□ -0.56
BRCA2-202ENST00000470094 IFNLR1Q8IU57 520 aaPredicted RBP11.53□□□□□ -0.56
BRCA2-202ENST00000470094 FARP1Q9Y4F1 1045 aaPredicted RBP11.5□□□□□ -0.57
BRCA2-202ENST00000470094 MNX1P50219 401 aaPredicted RBP11.49□□□□□ -0.57
BRCA2-202ENST00000470094 SP7Q8TDD2 431 aaPredicted RBP11.49□□□□□ -0.57
BRCA2-202ENST00000470094 NPM1P06748 294 aaKnown RBP eCLIP11.48□□□□□ -0.57
BRCA2-202ENST00000470094 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
BRCA2-202ENST00000470094 NUBP1P53384 320 aa11.35□□□□□ -0.59
BRCA2-202ENST00000470094 HAX1O00165 279 aa11.31□□□□□ -0.6
BRCA2-202ENST00000470094 PAK3O75914 559 aaPredicted RBP11.31□□□□□ -0.6
BRCA2-202ENST00000470094 RASEFQ8IZ41 740 aa11.31□□□□□ -0.6
BRCA2-202ENST00000470094 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
BRCA2-202ENST00000470094 CD44P16070 742 aaKnown RBP11.29□□□□□ -0.6
BRCA2-202ENST00000470094 DCAF8Q5TAQ9 597 aa11.28□□□□□ -0.6
BRCA2-202ENST00000470094 C19orf67A6NJJ6 358 aa11.27□□□□□ -0.61
BRCA2-202ENST00000470094 GSE1Q14687 1217 aa11.27□□□□□ -0.61
BRCA2-202ENST00000470094 TSPYL2Q9H2G4 693 aaPredicted RBP11.27□□□□□ -0.61
BRCA2-202ENST00000470094 CIZ1Q9ULV3 898 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 161.4 ms