RNA–Protein interactions for RNA: ENST00000468723.1

GPNMB-207, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 808 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-207ENST00000468723 AEBP2Q6ZN18 517 aaPredicted RBP22.71■■□□□ 1.23
GPNMB-207ENST00000468723 CHIC1Q5VXU3 224 aa22.03■■□□□ 1.12
GPNMB-207ENST00000468723 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
GPNMB-207ENST00000468723 SENP3Q9H4L4 574 aaPredicted RBP19.23■□□□□ 0.67
GPNMB-207ENST00000468723 FOXD1Q16676 465 aa17.92■□□□□ 0.46
GPNMB-207ENST00000468723 PLPPR3Q6T4P5 718 aa17.82■□□□□ 0.44
GPNMB-207ENST00000468723 PPP6R1Q9UPN7 881 aa17.18■□□□□ 0.34
GPNMB-207ENST00000468723 ADRA2BP18089 450 aa17.17■□□□□ 0.34
GPNMB-207ENST00000468723 PIAS4Q8N2W9 510 aaPredicted RBP16.87■□□□□ 0.29
GPNMB-207ENST00000468723 MSH5O43196 834 aa16.51■□□□□ 0.23
GPNMB-207ENST00000468723 POTEDQ86YR6 584 aa16.45■□□□□ 0.22
GPNMB-207ENST00000468723 PPP4R3CPQ6ZMV5 832 aa15.73■□□□□ 0.11
GPNMB-207ENST00000468723 MAPK8IP2Q13387 824 aaPredicted RBP15.63■□□□□ 0.09
GPNMB-207ENST00000468723 SCAF1Q9H7N4 1312 aaKnown RBP15.63■□□□□ 0.09
GPNMB-207ENST00000468723 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
GPNMB-207ENST00000468723 CNKSR2Q8WXI2 1034 aa15.28■□□□□ 0.04
GPNMB-207ENST00000468723 KCNA4P22459 653 aa15.26■□□□□ 0.03
GPNMB-207ENST00000468723 NCBP3Q53F19 620 aaKnown RBP15.25■□□□□ 0.03
GPNMB-207ENST00000468723 NPM3O75607 178 aaKnown RBP15.06■□□□□ 0
GPNMB-207ENST00000468723 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
GPNMB-207ENST00000468723 HOXD11P31277 338 aaPredicted RBP14.96□□□□□ -0.01
GPNMB-207ENST00000468723 DCAF8L1A6NGE4 600 aa14.79□□□□□ -0.04
GPNMB-207ENST00000468723 DNAJC5BQ9UF47 199 aa14.5□□□□□ -0.09
GPNMB-207ENST00000468723 SLC4A1APQ9BWU0 796 aaKnown RBP14.49□□□□□ -0.09
GPNMB-207ENST00000468723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.32□□□□□ -0.12
GPNMB-207ENST00000468723 SLC4A2P04920 1241 aa14.25□□□□□ -0.13
GPNMB-207ENST00000468723 RNF39Q9H2S5 420 aa14.15□□□□□ -0.14
GPNMB-207ENST00000468723 U3KPZ7 1027 aaPredicted RBP14.06□□□□□ -0.16
GPNMB-207ENST00000468723 ZBTB22O15209 634 aa14.03□□□□□ -0.16
GPNMB-207ENST00000468723 FOXD4L1Q9NU39 408 aa14.03□□□□□ -0.16
GPNMB-207ENST00000468723 EHMT2Q96KQ7 1210 aa14.02□□□□□ -0.17
GPNMB-207ENST00000468723 C1QBPQ07021 282 aaKnown RBP13.95□□□□□ -0.18
GPNMB-207ENST00000468723 CACNB1Q02641 598 aaPredicted RBP13.92□□□□□ -0.18
GPNMB-207ENST00000468723 MYCNP04198 464 aaPredicted RBP13.89□□□□□ -0.19
GPNMB-207ENST00000468723 CSRNP3Q8WYN3 585 aa13.86□□□□□ -0.19
GPNMB-207ENST00000468723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.78□□□□□ -0.2
GPNMB-207ENST00000468723 HNRNPUL2Q1KMD3 747 aaKnown RBP13.78□□□□□ -0.2
GPNMB-207ENST00000468723 SAMD1Q6SPF0 538 aaPredicted RBP13.75□□□□□ -0.21
GPNMB-207ENST00000468723 SPINK5Q9NQ38 1064 aaPredicted RBP13.74□□□□□ -0.21
GPNMB-207ENST00000468723 CAPN15O75808 1086 aa13.69□□□□□ -0.22
GPNMB-207ENST00000468723 APLP2Q06481 763 aa13.65□□□□□ -0.22
GPNMB-207ENST00000468723 TRHP20396 242 aaPredicted RBP13.62□□□□□ -0.23
GPNMB-207ENST00000468723 ATF5Q9Y2D1 282 aaPredicted RBP13.6□□□□□ -0.23
GPNMB-207ENST00000468723 ZNF219Q9P2Y4 722 aaPredicted RBP13.53□□□□□ -0.24
GPNMB-207ENST00000468723 ATXN8OSP0DMR3 200 aa13.5□□□□□ -0.25
GPNMB-207ENST00000468723 ABCB7O75027 752 aa13.45□□□□□ -0.26
GPNMB-207ENST00000468723 DSG3P32926 999 aa13.45□□□□□ -0.26
GPNMB-207ENST00000468723 POLA2Q14181 598 aa13.34□□□□□ -0.27
GPNMB-207ENST00000468723 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
GPNMB-207ENST00000468723 FBLN2P98095 1184 aa12.98□□□□□ -0.33
GPNMB-207ENST00000468723 MKRN4PQ13434 485 aaPredicted RBP12.97□□□□□ -0.33
GPNMB-207ENST00000468723 OSCARQ8IYS5 282 aa12.89□□□□□ -0.35
GPNMB-207ENST00000468723 RBM42Q9BTD8 480 aaKnown RBP12.78□□□□□ -0.36
GPNMB-207ENST00000468723 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
GPNMB-207ENST00000468723 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
GPNMB-207ENST00000468723 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
GPNMB-207ENST00000468723 POTEHQ6S545 545 aa12.68□□□□□ -0.38
GPNMB-207ENST00000468723 ZNF692Q9BU19 519 aaPredicted RBP12.68□□□□□ -0.38
GPNMB-207ENST00000468723 SPDYE4A6NLX3 237 aa12.62□□□□□ -0.39
GPNMB-207ENST00000468723 AKT1S1Q96B36 256 aa12.61□□□□□ -0.39
GPNMB-207ENST00000468723 SSUH2Q9Y2M2 353 aa12.58□□□□□ -0.4
GPNMB-207ENST00000468723 FKBP8Q14318 412 aa12.56□□□□□ -0.4
GPNMB-207ENST00000468723 REM2Q8IYK8 340 aaPredicted RBP12.52□□□□□ -0.41
GPNMB-207ENST00000468723 PABPN1Q86U42 306 aaKnown RBP eCLIP12.51□□□□□ -0.41
GPNMB-207ENST00000468723 CLEC11AQ9Y240 323 aa12.39□□□□□ -0.43
GPNMB-207ENST00000468723 PITPNM1O00562 1244 aa12.38□□□□□ -0.43
GPNMB-207ENST00000468723 SPDYE1Q8NFV5 336 aaPredicted RBP12.36□□□□□ -0.43
GPNMB-207ENST00000468723 CHRDL2Q6WN34 429 aa12.33□□□□□ -0.44
GPNMB-207ENST00000468723 PROM2Q8N271 834 aa12.32□□□□□ -0.44
GPNMB-207ENST00000468723 PRR29P0C7W0 189 aa12.22□□□□□ -0.45
GPNMB-207ENST00000468723 STAG3Q9UJ98 1225 aa12.21□□□□□ -0.45
GPNMB-207ENST00000468723 PIP4P2Q8N4L2 257 aa12.16□□□□□ -0.46
GPNMB-207ENST00000468723 FXR2P51116 673 aaKnown RBP eCLIP12.14□□□□□ -0.47
GPNMB-207ENST00000468723 CHADLQ6NUI6 762 aa12.1□□□□□ -0.47
GPNMB-207ENST00000468723 PRKAR2AP13861 404 aaKnown RBP12.09□□□□□ -0.47
GPNMB-207ENST00000468723 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
GPNMB-207ENST00000468723 CREBZFQ9NS37 354 aa12.03□□□□□ -0.48
GPNMB-207ENST00000468723 MIER1Q8N108 512 aa12.01□□□□□ -0.49
GPNMB-207ENST00000468723 PLCD3Q8N3E9 789 aa11.97□□□□□ -0.49
GPNMB-207ENST00000468723 VASPP50552 380 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-207ENST00000468723 FARP1Q9Y4F1 1045 aaPredicted RBP11.92□□□□□ -0.5
GPNMB-207ENST00000468723 PLEKHG5O94827 1062 aa11.91□□□□□ -0.5
GPNMB-207ENST00000468723 MNX1P50219 401 aaPredicted RBP11.87□□□□□ -0.51
GPNMB-207ENST00000468723 HAX1O00165 279 aa11.84□□□□□ -0.51
GPNMB-207ENST00000468723 KLHL34Q8N239 644 aa11.82□□□□□ -0.52
GPNMB-207ENST00000468723 NPM1P06748 294 aaKnown RBP eCLIP11.8□□□□□ -0.52
GPNMB-207ENST00000468723 IFNLR1Q8IU57 520 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-207ENST00000468723 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
GPNMB-207ENST00000468723 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
GPNMB-207ENST00000468723 EVX2Q03828 476 aa11.74□□□□□ -0.53
GPNMB-207ENST00000468723 CD44P16070 742 aaKnown RBP11.73□□□□□ -0.53
GPNMB-207ENST00000468723 RASEFQ8IZ41 740 aa11.68□□□□□ -0.54
GPNMB-207ENST00000468723 TSPYL2Q9H2G4 693 aaPredicted RBP11.68□□□□□ -0.54
GPNMB-207ENST00000468723 NUBP1P53384 320 aa11.67□□□□□ -0.54
GPNMB-207ENST00000468723 ZRANB1Q9UGI0 708 aa11.66□□□□□ -0.54
GPNMB-207ENST00000468723 SPOCK2Q92563 424 aa11.65□□□□□ -0.54
GPNMB-207ENST00000468723 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
GPNMB-207ENST00000468723 DCAF8Q5TAQ9 597 aa11.6□□□□□ -0.55
GPNMB-207ENST00000468723 FAM212AQ96EL1 285 aa11.57□□□□□ -0.56
GPNMB-207ENST00000468723 SP7Q8TDD2 431 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms