RNA–Protein interactions for RNA: ENST00000467141.1

MSL3-209, Transcript of MSL complex subunit 3, humanhuman

TSL 3

Gene MSL3, Length 599 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-209ENST00000467141 AEBP2Q6ZN18 517 aaPredicted RBP23.13■■□□□ 1.29
MSL3-209ENST00000467141 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
MSL3-209ENST00000467141 SENP3Q9H4L4 574 aaPredicted RBP19.91■□□□□ 0.78
MSL3-209ENST00000467141 PHF23Q9BUL5 403 aaPredicted RBP19.53■□□□□ 0.72
MSL3-209ENST00000467141 POTEDQ86YR6 584 aa19.51■□□□□ 0.71
MSL3-209ENST00000467141 FOXD1Q16676 465 aa18.72■□□□□ 0.59
MSL3-209ENST00000467141 MSH5O43196 834 aa17.94■□□□□ 0.46
MSL3-209ENST00000467141 PIAS4Q8N2W9 510 aaPredicted RBP17.25■□□□□ 0.35
MSL3-209ENST00000467141 PPP6R1Q9UPN7 881 aa16.63■□□□□ 0.25
MSL3-209ENST00000467141 ADRA2BP18089 450 aa16.54■□□□□ 0.24
MSL3-209ENST00000467141 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
MSL3-209ENST00000467141 PLPPR3Q6T4P5 718 aa16.14■□□□□ 0.17
MSL3-209ENST00000467141 DMRT2Q9Y5R5 561 aa15.58■□□□□ 0.08
MSL3-209ENST00000467141 MAPK8IP2Q13387 824 aaPredicted RBP15.55■□□□□ 0.08
MSL3-209ENST00000467141 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
MSL3-209ENST00000467141 RNF39Q9H2S5 420 aa15.18■□□□□ 0.02
MSL3-209ENST00000467141 SCAF1Q9H7N4 1312 aaKnown RBP15.11■□□□□ 0.01
MSL3-209ENST00000467141 POTEHQ6S545 545 aa15.08■□□□□ 0
MSL3-209ENST00000467141 C1QBPQ07021 282 aaKnown RBP14.91□□□□□ -0.02
MSL3-209ENST00000467141 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
MSL3-209ENST00000467141 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
MSL3-209ENST00000467141 RNF216Q9NWF9 866 aaPredicted RBP14.14□□□□□ -0.15
MSL3-209ENST00000467141 PPP4R3CPQ6ZMV5 832 aa14.02□□□□□ -0.17
MSL3-209ENST00000467141 CNKSR2Q8WXI2 1034 aa14□□□□□ -0.17
MSL3-209ENST00000467141 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.97□□□□□ -0.17
MSL3-209ENST00000467141 DSG3P32926 999 aa13.86□□□□□ -0.19
MSL3-209ENST00000467141 CAPN15O75808 1086 aa13.75□□□□□ -0.21
MSL3-209ENST00000467141 SPINK5Q9NQ38 1064 aaPredicted RBP13.67□□□□□ -0.22
MSL3-209ENST00000467141 SP7Q8TDD2 431 aaPredicted RBP13.57□□□□□ -0.24
MSL3-209ENST00000467141 U3KPZ7 1027 aaPredicted RBP13.47□□□□□ -0.25
MSL3-209ENST00000467141 CHRDL2Q6WN34 429 aa13.44□□□□□ -0.26
MSL3-209ENST00000467141 ABCB7O75027 752 aa13.33□□□□□ -0.28
MSL3-209ENST00000467141 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
MSL3-209ENST00000467141 RBM42Q9BTD8 480 aaKnown RBP13.25□□□□□ -0.29
MSL3-209ENST00000467141 NCBP3Q53F19 620 aaKnown RBP13.12□□□□□ -0.31
MSL3-209ENST00000467141 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
MSL3-209ENST00000467141 HAX1O00165 279 aa13.04□□□□□ -0.32
MSL3-209ENST00000467141 PLSCR2Q9NRY7 297 aa13.02□□□□□ -0.33
MSL3-209ENST00000467141 APLP2Q06481 763 aa12.98□□□□□ -0.33
MSL3-209ENST00000467141 NPM3O75607 178 aaKnown RBP12.92□□□□□ -0.34
MSL3-209ENST00000467141 PIP4P2Q8N4L2 257 aa12.87□□□□□ -0.35
MSL3-209ENST00000467141 LHX8Q68G74 356 aa12.75□□□□□ -0.37
MSL3-209ENST00000467141 EVX2Q03828 476 aa12.73□□□□□ -0.37
MSL3-209ENST00000467141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.69□□□□□ -0.38
MSL3-209ENST00000467141 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
MSL3-209ENST00000467141 AKT1S1Q96B36 256 aa12.69□□□□□ -0.38
MSL3-209ENST00000467141 SLC4A2P04920 1241 aa12.62□□□□□ -0.39
MSL3-209ENST00000467141 POLA2Q14181 598 aa12.61□□□□□ -0.39
MSL3-209ENST00000467141 REM2Q8IYK8 340 aaPredicted RBP12.6□□□□□ -0.39
MSL3-209ENST00000467141 FXR2P51116 673 aaKnown RBP eCLIP12.57□□□□□ -0.4
MSL3-209ENST00000467141 SAMD1Q6SPF0 538 aaPredicted RBP12.55□□□□□ -0.4
MSL3-209ENST00000467141 PITPNM1O00562 1244 aa12.48□□□□□ -0.41
MSL3-209ENST00000467141 GABBR2O75899 941 aa12.37□□□□□ -0.43
MSL3-209ENST00000467141 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
MSL3-209ENST00000467141 C19orf67A6NJJ6 358 aa12.21□□□□□ -0.45
MSL3-209ENST00000467141 PRKAR2AP13861 404 aaKnown RBP12.19□□□□□ -0.46
MSL3-209ENST00000467141 ZBTB12Q9Y330 459 aaPredicted RBP12.18□□□□□ -0.46
MSL3-209ENST00000467141 POTEMA6NI47 508 aa12.08□□□□□ -0.48
MSL3-209ENST00000467141 POTEIP0CG38 1075 aa12.07□□□□□ -0.48
MSL3-209ENST00000467141 POTEGQ6S5H5 508 aa12□□□□□ -0.49
MSL3-209ENST00000467141 CLEC11AQ9Y240 323 aa11.97□□□□□ -0.49
MSL3-209ENST00000467141 MYCNP04198 464 aaPredicted RBP11.96□□□□□ -0.49
MSL3-209ENST00000467141 PCDH10Q9P2E7 1040 aa11.87□□□□□ -0.51
MSL3-209ENST00000467141 OTUD5Q96G74 571 aa11.86□□□□□ -0.51
MSL3-209ENST00000467141 CHADLQ6NUI6 762 aa11.84□□□□□ -0.51
MSL3-209ENST00000467141 DCBLD2Q96PD2 775 aa11.84□□□□□ -0.51
MSL3-209ENST00000467141 SPDYE1Q8NFV5 336 aaPredicted RBP11.83□□□□□ -0.52
MSL3-209ENST00000467141 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
MSL3-209ENST00000467141 SPDYE2BA6NHP3 402 aa11.72□□□□□ -0.53
MSL3-209ENST00000467141 SPDYE6P0CI01 402 aa11.72□□□□□ -0.53
MSL3-209ENST00000467141 CD44P16070 742 aaKnown RBP11.72□□□□□ -0.53
MSL3-209ENST00000467141 SPDYE2Q495Y8 402 aa11.72□□□□□ -0.53
MSL3-209ENST00000467141 CLCN6P51797 869 aa11.7□□□□□ -0.54
MSL3-209ENST00000467141 POTEB2H3BUK9 544 aa11.68□□□□□ -0.54
MSL3-209ENST00000467141 KCNA4P22459 653 aa11.67□□□□□ -0.54
MSL3-209ENST00000467141 PRR29P0C7W0 189 aa11.56□□□□□ -0.56
MSL3-209ENST00000467141 FAM163AQ96GL9 167 aaPredicted RBP11.5□□□□□ -0.57
MSL3-209ENST00000467141 FARP1Q9Y4F1 1045 aaPredicted RBP11.48□□□□□ -0.57
MSL3-209ENST00000467141 ZNF692Q9BU19 519 aaPredicted RBP11.47□□□□□ -0.57
MSL3-209ENST00000467141 FBLN2P98095 1184 aa11.45□□□□□ -0.58
MSL3-209ENST00000467141 LCE2DQ5TA82 110 aaPredicted RBP11.44□□□□□ -0.58
MSL3-209ENST00000467141 GALR2O43603 387 aaPredicted RBP11.43□□□□□ -0.58
MSL3-209ENST00000467141 ZNF579Q8NAF0 562 aaKnown RBP11.41□□□□□ -0.58
MSL3-209ENST00000467141 ZRANB1Q9UGI0 708 aa11.4□□□□□ -0.58
MSL3-209ENST00000467141 SSUH2Q9Y2M2 353 aa11.39□□□□□ -0.59
MSL3-209ENST00000467141 CDAN1Q8IWY9 1227 aa11.33□□□□□ -0.6
MSL3-209ENST00000467141 PELP1Q8IZL8 1130 aaKnown RBP11.3□□□□□ -0.6
MSL3-209ENST00000467141 POTEJP0CG39 1038 aa11.29□□□□□ -0.6
MSL3-209ENST00000467141 MAMSTRQ6ZN01 415 aa11.29□□□□□ -0.6
MSL3-209ENST00000467141 PABPN1Q86U42 306 aaKnown RBP eCLIP11.25□□□□□ -0.61
MSL3-209ENST00000467141 METRNQ9UJH8 293 aa11.23□□□□□ -0.61
MSL3-209ENST00000467141 FOXD4L1Q9NU39 408 aa11.22□□□□□ -0.61
MSL3-209ENST00000467141 SCUBE2Q9NQ36 999 aa11.19□□□□□ -0.62
MSL3-209ENST00000467141 MKRN4PQ13434 485 aaPredicted RBP11.18□□□□□ -0.62
MSL3-209ENST00000467141 MMRN1Q13201 1228 aa11.15□□□□□ -0.62
MSL3-209ENST00000467141 C7P10643 843 aa11.14□□□□□ -0.63
MSL3-209ENST00000467141 SLC39A7Q92504 469 aa11.13□□□□□ -0.63
MSL3-209ENST00000467141 PHF12Q96QT6 1004 aa11.12□□□□□ -0.63
MSL3-209ENST00000467141 PAK3O75914 559 aaPredicted RBP11.05□□□□□ -0.64
MSL3-209ENST00000467141 ASTLQ6HA08 431 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms