RNA–Protein interactions for RNA: ENST00000464313.1

PTPN12-210, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 4

Gene PTPN12, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-210ENST00000464313 AEBP2Q6ZN18 517 aaPredicted RBP27.96■■■□□ 2.07
PTPN12-210ENST00000464313 CHIC1Q5VXU3 224 aa26.13■■□□□ 1.77
PTPN12-210ENST00000464313 SENP3Q9H4L4 574 aaPredicted RBP23.97■■□□□ 1.43
PTPN12-210ENST00000464313 PHF23Q9BUL5 403 aaPredicted RBP23.57■■□□□ 1.36
PTPN12-210ENST00000464313 FOXD1Q16676 465 aa22.44■■□□□ 1.18
PTPN12-210ENST00000464313 POTEDQ86YR6 584 aa22.01■■□□□ 1.11
PTPN12-210ENST00000464313 MSH5O43196 834 aa21.28■■□□□ 1
PTPN12-210ENST00000464313 PIAS4Q8N2W9 510 aaPredicted RBP20.79■□□□□ 0.92
PTPN12-210ENST00000464313 PPP6R1Q9UPN7 881 aa20.42■□□□□ 0.86
PTPN12-210ENST00000464313 PLPPR3Q6T4P5 718 aa20.33■□□□□ 0.85
PTPN12-210ENST00000464313 ADRA2BP18089 450 aa20.32■□□□□ 0.84
PTPN12-210ENST00000464313 MAPK8IP2Q13387 824 aaPredicted RBP18.89■□□□□ 0.61
PTPN12-210ENST00000464313 DMRT2Q9Y5R5 561 aa18.89■□□□□ 0.61
PTPN12-210ENST00000464313 CACNB1Q02641 598 aaPredicted RBP18.72■□□□□ 0.59
PTPN12-210ENST00000464313 SCAF1Q9H7N4 1312 aaKnown RBP18.6■□□□□ 0.57
PTPN12-210ENST00000464313 DCAF8L1A6NGE4 600 aa18.18■□□□□ 0.5
PTPN12-210ENST00000464313 RNF39Q9H2S5 420 aa18.08■□□□□ 0.48
PTPN12-210ENST00000464313 HOXD11P31277 338 aaPredicted RBP17.91■□□□□ 0.46
PTPN12-210ENST00000464313 C1QBPQ07021 282 aaKnown RBP17.79■□□□□ 0.44
PTPN12-210ENST00000464313 PPP4R3CPQ6ZMV5 832 aa17.73■□□□□ 0.43
PTPN12-210ENST00000464313 RNF216Q9NWF9 866 aaPredicted RBP17.59■□□□□ 0.41
PTPN12-210ENST00000464313 CNKSR2Q8WXI2 1034 aa17.57■□□□□ 0.4
PTPN12-210ENST00000464313 DNAJC5BQ9UF47 199 aa17.44■□□□□ 0.38
PTPN12-210ENST00000464313 POTEHQ6S545 545 aa17.11■□□□□ 0.33
PTPN12-210ENST00000464313 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.09■□□□□ 0.33
PTPN12-210ENST00000464313 NCBP3Q53F19 620 aaKnown RBP16.84■□□□□ 0.29
PTPN12-210ENST00000464313 DSG3P32926 999 aa16.7■□□□□ 0.26
PTPN12-210ENST00000464313 CAPN15O75808 1086 aa16.63■□□□□ 0.25
PTPN12-210ENST00000464313 U3KPZ7 1027 aaPredicted RBP16.63■□□□□ 0.25
PTPN12-210ENST00000464313 SPINK5Q9NQ38 1064 aaPredicted RBP16.61■□□□□ 0.25
PTPN12-210ENST00000464313 NPM3O75607 178 aaKnown RBP16.58■□□□□ 0.24
PTPN12-210ENST00000464313 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
PTPN12-210ENST00000464313 ABCB7O75027 752 aa16.19■□□□□ 0.18
PTPN12-210ENST00000464313 ZNF219Q9P2Y4 722 aaPredicted RBP16.12■□□□□ 0.17
PTPN12-210ENST00000464313 APLP2Q06481 763 aa16.1■□□□□ 0.17
PTPN12-210ENST00000464313 KCNA4P22459 653 aa16.05■□□□□ 0.16
PTPN12-210ENST00000464313 SLC4A2P04920 1241 aa16.02■□□□□ 0.16
PTPN12-210ENST00000464313 RBM42Q9BTD8 480 aaKnown RBP15.95■□□□□ 0.14
PTPN12-210ENST00000464313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.91■□□□□ 0.14
PTPN12-210ENST00000464313 HNRNPUL2Q1KMD3 747 aaKnown RBP15.91■□□□□ 0.14
PTPN12-210ENST00000464313 CHRDL2Q6WN34 429 aa15.89■□□□□ 0.13
PTPN12-210ENST00000464313 SAMD1Q6SPF0 538 aaPredicted RBP15.78■□□□□ 0.12
PTPN12-210ENST00000464313 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
PTPN12-210ENST00000464313 POLA2Q14181 598 aa15.59■□□□□ 0.09
PTPN12-210ENST00000464313 AKT1S1Q96B36 256 aa15.43■□□□□ 0.06
PTPN12-210ENST00000464313 MYCNP04198 464 aaPredicted RBP15.36■□□□□ 0.05
PTPN12-210ENST00000464313 PIP4P2Q8N4L2 257 aa15.36■□□□□ 0.05
PTPN12-210ENST00000464313 HAX1O00165 279 aa15.3■□□□□ 0.04
PTPN12-210ENST00000464313 REM2Q8IYK8 340 aaPredicted RBP15.29■□□□□ 0.04
PTPN12-210ENST00000464313 ZBTB12Q9Y330 459 aaPredicted RBP15.2■□□□□ 0.02
PTPN12-210ENST00000464313 FXR2P51116 673 aaKnown RBP eCLIP15.15■□□□□ 0.02
PTPN12-210ENST00000464313 PITPNM1O00562 1244 aa15.13■□□□□ 0.01
PTPN12-210ENST00000464313 OSCARQ8IYS5 282 aa15.11■□□□□ 0.01
PTPN12-210ENST00000464313 SLC4A1APQ9BWU0 796 aaKnown RBP15.09■□□□□ 0.01
PTPN12-210ENST00000464313 ATF5Q9Y2D1 282 aaPredicted RBP15.06■□□□□ 0
PTPN12-210ENST00000464313 EVX2Q03828 476 aa15.04■□□□□ -0
PTPN12-210ENST00000464313 FOXD4L1Q9NU39 408 aa14.97□□□□□ -0.01
PTPN12-210ENST00000464313 ZBTB22O15209 634 aa14.77□□□□□ -0.05
PTPN12-210ENST00000464313 PRKAR2AP13861 404 aaKnown RBP14.74□□□□□ -0.05
PTPN12-210ENST00000464313 LHX8Q68G74 356 aa14.72□□□□□ -0.05
PTPN12-210ENST00000464313 C19orf67A6NJJ6 358 aa14.69□□□□□ -0.06
PTPN12-210ENST00000464313 SPDYE2BA6NHP3 402 aa14.68□□□□□ -0.06
PTPN12-210ENST00000464313 SPDYE6P0CI01 402 aa14.68□□□□□ -0.06
PTPN12-210ENST00000464313 SPDYE2Q495Y8 402 aa14.68□□□□□ -0.06
PTPN12-210ENST00000464313 GABBR2O75899 941 aa14.67□□□□□ -0.06
PTPN12-210ENST00000464313 CLEC11AQ9Y240 323 aa14.64□□□□□ -0.07
PTPN12-210ENST00000464313 SPDYE1Q8NFV5 336 aaPredicted RBP14.6□□□□□ -0.07
PTPN12-210ENST00000464313 FBLN2P98095 1184 aa14.53□□□□□ -0.08
PTPN12-210ENST00000464313 ATXN8OSP0DMR3 200 aa14.46□□□□□ -0.09
PTPN12-210ENST00000464313 CHADLQ6NUI6 762 aa14.43□□□□□ -0.1
PTPN12-210ENST00000464313 ZNF692Q9BU19 519 aaPredicted RBP14.4□□□□□ -0.1
PTPN12-210ENST00000464313 PLSCR2Q9NRY7 297 aa14.4□□□□□ -0.1
PTPN12-210ENST00000464313 SSUH2Q9Y2M2 353 aa14.39□□□□□ -0.11
PTPN12-210ENST00000464313 POTEIP0CG38 1075 aa14.34□□□□□ -0.11
PTPN12-210ENST00000464313 MKRN4PQ13434 485 aaPredicted RBP14.32□□□□□ -0.12
PTPN12-210ENST00000464313 PRR29P0C7W0 189 aa14.29□□□□□ -0.12
PTPN12-210ENST00000464313 CD44P16070 742 aaKnown RBP14.22□□□□□ -0.13
PTPN12-210ENST00000464313 CLCN6P51797 869 aa14.18□□□□□ -0.14
PTPN12-210ENST00000464313 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
PTPN12-210ENST00000464313 DCBLD2Q96PD2 775 aa14.13□□□□□ -0.15
PTPN12-210ENST00000464313 FARP1Q9Y4F1 1045 aaPredicted RBP14.13□□□□□ -0.15
PTPN12-210ENST00000464313 ZNF579Q8NAF0 562 aaKnown RBP13.96□□□□□ -0.17
PTPN12-210ENST00000464313 OTUD5Q96G74 571 aa13.95□□□□□ -0.18
PTPN12-210ENST00000464313 CSRNP3Q8WYN3 585 aa13.94□□□□□ -0.18
PTPN12-210ENST00000464313 ZRANB1Q9UGI0 708 aa13.92□□□□□ -0.18
PTPN12-210ENST00000464313 POTEMA6NI47 508 aa13.89□□□□□ -0.19
PTPN12-210ENST00000464313 POTEB2H3BUK9 544 aa13.86□□□□□ -0.19
PTPN12-210ENST00000464313 GALR2O43603 387 aaPredicted RBP13.85□□□□□ -0.19
PTPN12-210ENST00000464313 POTEGQ6S5H5 508 aa13.83□□□□□ -0.2
PTPN12-210ENST00000464313 CREBZFQ9NS37 354 aa13.74□□□□□ -0.21
PTPN12-210ENST00000464313 EHMT2Q96KQ7 1210 aa13.72□□□□□ -0.21
PTPN12-210ENST00000464313 PCDH10Q9P2E7 1040 aa13.71□□□□□ -0.21
PTPN12-210ENST00000464313 PAK3O75914 559 aaPredicted RBP13.65□□□□□ -0.22
PTPN12-210ENST00000464313 PELP1Q8IZL8 1130 aaKnown RBP13.65□□□□□ -0.22
PTPN12-210ENST00000464313 PHF12Q96QT6 1004 aa13.65□□□□□ -0.22
PTPN12-210ENST00000464313 STAG3Q9UJ98 1225 aa13.62□□□□□ -0.23
PTPN12-210ENST00000464313 METRNQ9UJH8 293 aa13.55□□□□□ -0.24
PTPN12-210ENST00000464313 POTEJP0CG39 1038 aa13.53□□□□□ -0.24
PTPN12-210ENST00000464313 ASTLQ6HA08 431 aaPredicted RBP13.52□□□□□ -0.25
PTPN12-210ENST00000464313 C7P10643 843 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms