RNA–Protein interactions for RNA: ENST00000443638.1

TM9SF3-202, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 3

Gene TM9SF3, Length 868 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-202ENST00000443638 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
TM9SF3-202ENST00000443638 CHIC1Q5VXU3 224 aa18.14■□□□□ 0.49
TM9SF3-202ENST00000443638 SENP3Q9H4L4 574 aaPredicted RBP16.49■□□□□ 0.23
TM9SF3-202ENST00000443638 PHF23Q9BUL5 403 aaPredicted RBP16.2■□□□□ 0.18
TM9SF3-202ENST00000443638 FOXD1Q16676 465 aa15.33■□□□□ 0.04
TM9SF3-202ENST00000443638 PLPPR3Q6T4P5 718 aa14.53□□□□□ -0.08
TM9SF3-202ENST00000443638 MSH5O43196 834 aa14.47□□□□□ -0.09
TM9SF3-202ENST00000443638 POTEDQ86YR6 584 aa14.34□□□□□ -0.11
TM9SF3-202ENST00000443638 PIAS4Q8N2W9 510 aaPredicted RBP14.3□□□□□ -0.12
TM9SF3-202ENST00000443638 PPP6R1Q9UPN7 881 aa14.19□□□□□ -0.14
TM9SF3-202ENST00000443638 ADRA2BP18089 450 aa14.13□□□□□ -0.15
TM9SF3-202ENST00000443638 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
TM9SF3-202ENST00000443638 KCNA4P22459 653 aa13.71□□□□□ -0.21
TM9SF3-202ENST00000443638 CSRNP3Q8WYN3 585 aa13.32□□□□□ -0.28
TM9SF3-202ENST00000443638 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
TM9SF3-202ENST00000443638 DMRT2Q9Y5R5 561 aa13.04□□□□□ -0.32
TM9SF3-202ENST00000443638 SCAF1Q9H7N4 1312 aaKnown RBP13.02□□□□□ -0.33
TM9SF3-202ENST00000443638 MAPK8IP2Q13387 824 aaPredicted RBP13.01□□□□□ -0.33
TM9SF3-202ENST00000443638 PPP4R3CPQ6ZMV5 832 aa12.94□□□□□ -0.34
TM9SF3-202ENST00000443638 NCBP3Q53F19 620 aaKnown RBP12.8□□□□□ -0.36
TM9SF3-202ENST00000443638 SLC24A1O60721 1099 aa12.75□□□□□ -0.37
TM9SF3-202ENST00000443638 NPM3O75607 178 aaKnown RBP12.71□□□□□ -0.37
TM9SF3-202ENST00000443638 ZBTB22O15209 634 aa12.7□□□□□ -0.38
TM9SF3-202ENST00000443638 RTN4Q9NQC3 1192 aaKnown RBP12.53□□□□□ -0.4
TM9SF3-202ENST00000443638 HOXD11P31277 338 aaPredicted RBP12.5□□□□□ -0.41
TM9SF3-202ENST00000443638 CACNB1Q02641 598 aaPredicted RBP12.47□□□□□ -0.41
TM9SF3-202ENST00000443638 AMER1Q5JTC6 1135 aaPredicted RBP12.46□□□□□ -0.41
TM9SF3-202ENST00000443638 DCAF8L1A6NGE4 600 aa12.45□□□□□ -0.42
TM9SF3-202ENST00000443638 CNKSR2Q8WXI2 1034 aa12.43□□□□□ -0.42
TM9SF3-202ENST00000443638 RNF216Q9NWF9 866 aaPredicted RBP12.37□□□□□ -0.43
TM9SF3-202ENST00000443638 DNAJC5BQ9UF47 199 aa12.33□□□□□ -0.44
TM9SF3-202ENST00000443638 FOXD4L1Q9NU39 408 aa12.32□□□□□ -0.44
TM9SF3-202ENST00000443638 RNF39Q9H2S5 420 aa12.31□□□□□ -0.44
TM9SF3-202ENST00000443638 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
TM9SF3-202ENST00000443638 FKBP8Q14318 412 aa11.9□□□□□ -0.5
TM9SF3-202ENST00000443638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.88□□□□□ -0.511e-6■□□□□ 9.2
TM9SF3-202ENST00000443638 ATXN8OSP0DMR3 200 aa11.84□□□□□ -0.51
TM9SF3-202ENST00000443638 SLC4A2P04920 1241 aa11.82□□□□□ -0.52
TM9SF3-202ENST00000443638 MYCNP04198 464 aaPredicted RBP11.69□□□□□ -0.54
TM9SF3-202ENST00000443638 U3KPZ7 1027 aaPredicted RBP11.61□□□□□ -0.55
TM9SF3-202ENST00000443638 PLCB2Q00722 1185 aa11.49□□□□□ -0.57
TM9SF3-202ENST00000443638 CAPN15O75808 1086 aa11.47□□□□□ -0.57
TM9SF3-202ENST00000443638 DSG3P32926 999 aa11.46□□□□□ -0.57
TM9SF3-202ENST00000443638 SPINK5Q9NQ38 1064 aaPredicted RBP11.46□□□□□ -0.57
TM9SF3-202ENST00000443638 ATF5Q9Y2D1 282 aaPredicted RBP11.36□□□□□ -0.59
TM9SF3-202ENST00000443638 APLP2Q06481 763 aa11.35□□□□□ -0.59
TM9SF3-202ENST00000443638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.3□□□□□ -0.6
TM9SF3-202ENST00000443638 HNRNPUL2Q1KMD3 747 aaKnown RBP11.3□□□□□ -0.6
TM9SF3-202ENST00000443638 BCANQ96GW7 911 aa11.27□□□□□ -0.61
TM9SF3-202ENST00000443638 ZNF219Q9P2Y4 722 aaPredicted RBP11.27□□□□□ -0.61
TM9SF3-202ENST00000443638 PRKCSHP14314 528 aaPredicted RBP11.25□□□□□ -0.61
TM9SF3-202ENST00000443638 TRHP20396 242 aaPredicted RBP11.24□□□□□ -0.61
TM9SF3-202ENST00000443638 HAP1P54257 671 aaPredicted RBP11.22□□□□□ -0.61
TM9SF3-202ENST00000443638 POTEHQ6S545 545 aa11.22□□□□□ -0.61
TM9SF3-202ENST00000443638 TAOK2Q9UL54 1235 aa11.22□□□□□ -0.61
TM9SF3-202ENST00000443638 SAMD1Q6SPF0 538 aaPredicted RBP11.21□□□□□ -0.61
TM9SF3-202ENST00000443638 FBXO3Q9UK99 471 aa11.21□□□□□ -0.61
TM9SF3-202ENST00000443638 ABCB7O75027 752 aa11.16□□□□□ -0.62
TM9SF3-202ENST00000443638 VSIG10Q8N0Z9 540 aa11.16□□□□□ -0.62
TM9SF3-202ENST00000443638 PROM2Q8N271 834 aa11.13□□□□□ -0.63
TM9SF3-202ENST00000443638 VASPP50552 380 aaPredicted RBP11.1□□□□□ -0.63
TM9SF3-202ENST00000443638 SPDYE4A6NLX3 237 aa11.04□□□□□ -0.64
TM9SF3-202ENST00000443638 PKD2Q13563 968 aa11.04□□□□□ -0.64
TM9SF3-202ENST00000443638 IFNLR1Q8IU57 520 aaPredicted RBP11.03□□□□□ -0.64
TM9SF3-202ENST00000443638 KDM2AQ9Y2K7 1162 aa11□□□□□ -0.65
TM9SF3-202ENST00000443638 RBM42Q9BTD8 480 aaKnown RBP10.99□□□□□ -0.65
TM9SF3-202ENST00000443638 DCAF8L2P0C7V8 631 aa10.98□□□□□ -0.65
TM9SF3-202ENST00000443638 TPRNQ4KMQ1 711 aa10.98□□□□□ -0.65
TM9SF3-202ENST00000443638 MKRN4PQ13434 485 aaPredicted RBP10.94□□□□□ -0.66
TM9SF3-202ENST00000443638 POLA2Q14181 598 aa10.92□□□□□ -0.66
TM9SF3-202ENST00000443638 BBXQ8WY36 941 aaPredicted RBP10.9□□□□□ -0.66
TM9SF3-202ENST00000443638 FBLN2P98095 1184 aa10.89□□□□□ -0.67
TM9SF3-202ENST00000443638 NPM1P06748 294 aaKnown RBP eCLIP10.84□□□□□ -0.67
TM9SF3-202ENST00000443638 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.84□□□□□ -0.67
TM9SF3-202ENST00000443638 PAXIP1Q6ZW49 1069 aaPredicted RBP10.79□□□□□ -0.68
TM9SF3-202ENST00000443638 CHRDL2Q6WN34 429 aa10.78□□□□□ -0.68
TM9SF3-202ENST00000443638 ZBTB12Q9Y330 459 aaPredicted RBP10.75□□□□□ -0.69
TM9SF3-202ENST00000443638 CFAP44Q96MT7 982 aa10.72□□□□□ -0.69
TM9SF3-202ENST00000443638 ECM2O94769 699 aaPredicted RBP10.71□□□□□ -0.69
TM9SF3-202ENST00000443638 TSHZ2Q9NRE2 1034 aa10.71□□□□□ -0.69
TM9SF3-202ENST00000443638 SPOCK2Q92563 424 aa10.7□□□□□ -0.7
TM9SF3-202ENST00000443638 DNAJC5Q9H3Z4 198 aa10.7□□□□□ -0.7
TM9SF3-202ENST00000443638 AKT1S1Q96B36 256 aa10.68□□□□□ -0.7
TM9SF3-202ENST00000443638 TIMELESSQ9UNS1 1208 aa10.68□□□□□ -0.7
TM9SF3-202ENST00000443638 SPRYD3Q8NCJ5 442 aa10.66□□□□□ -0.7
TM9SF3-202ENST00000443638 RGL2O15211 777 aa10.64□□□□□ -0.71
TM9SF3-202ENST00000443638 TULP1O00294 542 aaPredicted RBP10.58□□□□□ -0.72
TM9SF3-202ENST00000443638 KLHL34Q8N239 644 aa10.57□□□□□ -0.72
TM9SF3-202ENST00000443638 OSCARQ8IYS5 282 aa10.56□□□□□ -0.72
TM9SF3-202ENST00000443638 REM2Q8IYK8 340 aaPredicted RBP10.55□□□□□ -0.72
TM9SF3-202ENST00000443638 NBR1Q14596 966 aa10.53□□□□□ -0.72
TM9SF3-202ENST00000443638 ARXQ96QS3 562 aa10.53□□□□□ -0.72
TM9SF3-202ENST00000443638 GTF3C3Q9Y5Q9 886 aa10.52□□□□□ -0.73
TM9SF3-202ENST00000443638 DAXXQ9UER7 740 aaPredicted RBP10.5□□□□□ -0.73
TM9SF3-202ENST00000443638 STAG3Q9UJ98 1225 aa10.47□□□□□ -0.73
TM9SF3-202ENST00000443638 CHGAP10645 457 aaKnown RBP10.46□□□□□ -0.73
TM9SF3-202ENST00000443638 PIP4P2Q8N4L2 257 aa10.46□□□□□ -0.73
TM9SF3-202ENST00000443638 ERICH6Q7L0X2 663 aa10.45□□□□□ -0.74
TM9SF3-202ENST00000443638 SP7Q8TDD2 431 aaPredicted RBP10.45□□□□□ -0.74
TM9SF3-202ENST00000443638 PITPNM1O00562 1244 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms