RNA–Protein interactions for RNA: ENST00000435252.1

GTF3C3-204, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 3

Gene GTF3C3, Length 527 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-204ENST00000435252 AEBP2Q6ZN18 517 aaPredicted RBP24.46■■□□□ 1.51
GTF3C3-204ENST00000435252 CHIC1Q5VXU3 224 aa23.82■■□□□ 1.4
GTF3C3-204ENST00000435252 SENP3Q9H4L4 574 aaPredicted RBP20.95■□□□□ 0.94
GTF3C3-204ENST00000435252 PHF23Q9BUL5 403 aaPredicted RBP20.82■□□□□ 0.92
GTF3C3-204ENST00000435252 PLPPR3Q6T4P5 718 aa19.45■□□□□ 0.7
GTF3C3-204ENST00000435252 FOXD1Q16676 465 aa19.35■□□□□ 0.69
GTF3C3-204ENST00000435252 PPP6R1Q9UPN7 881 aa18.41■□□□□ 0.54
GTF3C3-204ENST00000435252 ADRA2BP18089 450 aa18.37■□□□□ 0.53
GTF3C3-204ENST00000435252 PIAS4Q8N2W9 510 aaPredicted RBP18.21■□□□□ 0.51
GTF3C3-204ENST00000435252 MSH5O43196 834 aa18.06■□□□□ 0.48
GTF3C3-204ENST00000435252 POTEDQ86YR6 584 aa17.19■□□□□ 0.34
GTF3C3-204ENST00000435252 PPP4R3CPQ6ZMV5 832 aa17.08■□□□□ 0.32
GTF3C3-204ENST00000435252 SCAF1Q9H7N4 1312 aaKnown RBP17.04■□□□□ 0.32
GTF3C3-204ENST00000435252 NCBP3Q53F19 620 aaKnown RBP16.8■□□□□ 0.28
GTF3C3-204ENST00000435252 KCNA4P22459 653 aa16.76■□□□□ 0.27
GTF3C3-204ENST00000435252 MAPK8IP2Q13387 824 aaPredicted RBP16.69■□□□□ 0.26
GTF3C3-204ENST00000435252 DMRT2Q9Y5R5 561 aa16.66■□□□□ 0.26
GTF3C3-204ENST00000435252 CNKSR2Q8WXI2 1034 aa16.64■□□□□ 0.25
GTF3C3-204ENST00000435252 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
GTF3C3-204ENST00000435252 RNF216Q9NWF9 866 aaPredicted RBP16.29■□□□□ 0.2
GTF3C3-204ENST00000435252 HOXD11P31277 338 aaPredicted RBP16.27■□□□□ 0.2
GTF3C3-204ENST00000435252 SLC4A1APQ9BWU0 796 aaKnown RBP16.07■□□□□ 0.16
GTF3C3-204ENST00000435252 DNAJC5BQ9UF47 199 aa15.96■□□□□ 0.15
GTF3C3-204ENST00000435252 DCAF8L1A6NGE4 600 aa15.81■□□□□ 0.12
GTF3C3-204ENST00000435252 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
GTF3C3-204ENST00000435252 FOXD4L1Q9NU39 408 aa15.5■□□□□ 0.07
GTF3C3-204ENST00000435252 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.44■□□□□ 0.06
GTF3C3-204ENST00000435252 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
GTF3C3-204ENST00000435252 RNF39Q9H2S5 420 aa15.4■□□□□ 0.06
GTF3C3-204ENST00000435252 SLC4A2P04920 1241 aa15.39■□□□□ 0.05
GTF3C3-204ENST00000435252 ZBTB22O15209 634 aa15.34■□□□□ 0.05
GTF3C3-204ENST00000435252 C1QBPQ07021 282 aaKnown RBP15.27■□□□□ 0.04
GTF3C3-204ENST00000435252 MYCNP04198 464 aaPredicted RBP15.25■□□□□ 0.03
GTF3C3-204ENST00000435252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.16■□□□□ 0.02
GTF3C3-204ENST00000435252 HNRNPUL2Q1KMD3 747 aaKnown RBP15.16■□□□□ 0.02
GTF3C3-204ENST00000435252 U3KPZ7 1027 aaPredicted RBP15.14■□□□□ 0.01
GTF3C3-204ENST00000435252 CACNB1Q02641 598 aaPredicted RBP15.1■□□□□ 0.01
GTF3C3-204ENST00000435252 SAMD1Q6SPF0 538 aaPredicted RBP15.06■□□□□ 0
GTF3C3-204ENST00000435252 APLP2Q06481 763 aa15.04■□□□□ -0
GTF3C3-204ENST00000435252 ATXN8OSP0DMR3 200 aa14.99□□□□□ -0.01
GTF3C3-204ENST00000435252 ZNF219Q9P2Y4 722 aaPredicted RBP14.72□□□□□ -0.05
GTF3C3-204ENST00000435252 CAPN15O75808 1086 aa14.71□□□□□ -0.05
GTF3C3-204ENST00000435252 SPINK5Q9NQ38 1064 aaPredicted RBP14.71□□□□□ -0.05
GTF3C3-204ENST00000435252 ATF5Q9Y2D1 282 aaPredicted RBP14.64□□□□□ -0.07
GTF3C3-204ENST00000435252 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
GTF3C3-204ENST00000435252 DSG3P32926 999 aa14.55□□□□□ -0.08
GTF3C3-204ENST00000435252 POLA2Q14181 598 aa14.37□□□□□ -0.11
GTF3C3-204ENST00000435252 ABCB7O75027 752 aa14.34□□□□□ -0.11
GTF3C3-204ENST00000435252 ZBTB12Q9Y330 459 aaPredicted RBP14.31□□□□□ -0.12
GTF3C3-204ENST00000435252 FBLN2P98095 1184 aa14.27□□□□□ -0.13
GTF3C3-204ENST00000435252 MKRN4PQ13434 485 aaPredicted RBP14.03□□□□□ -0.16
GTF3C3-204ENST00000435252 FKBP8Q14318 412 aa14.01□□□□□ -0.17
GTF3C3-204ENST00000435252 RBM42Q9BTD8 480 aaKnown RBP14□□□□□ -0.17
GTF3C3-204ENST00000435252 SPDYE4A6NLX3 237 aa13.91□□□□□ -0.18
GTF3C3-204ENST00000435252 OSCARQ8IYS5 282 aa13.88□□□□□ -0.19
GTF3C3-204ENST00000435252 SPDYE2BA6NHP3 402 aa13.85□□□□□ -0.19
GTF3C3-204ENST00000435252 SPDYE6P0CI01 402 aa13.85□□□□□ -0.19
GTF3C3-204ENST00000435252 SPDYE2Q495Y8 402 aa13.85□□□□□ -0.19
GTF3C3-204ENST00000435252 ZNF692Q9BU19 519 aaPredicted RBP13.79□□□□□ -0.2
GTF3C3-204ENST00000435252 AKT1S1Q96B36 256 aa13.74□□□□□ -0.21
GTF3C3-204ENST00000435252 SSUH2Q9Y2M2 353 aa13.68□□□□□ -0.22
GTF3C3-204ENST00000435252 PROM2Q8N271 834 aa13.63□□□□□ -0.23
GTF3C3-204ENST00000435252 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
GTF3C3-204ENST00000435252 PABPN1Q86U42 306 aaKnown RBP eCLIP13.58□□□□□ -0.24
GTF3C3-204ENST00000435252 REM2Q8IYK8 340 aaPredicted RBP13.53□□□□□ -0.24
GTF3C3-204ENST00000435252 STAG3Q9UJ98 1225 aa13.5□□□□□ -0.25
GTF3C3-204ENST00000435252 SPDYE1Q8NFV5 336 aaPredicted RBP13.43□□□□□ -0.26
GTF3C3-204ENST00000435252 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
GTF3C3-204ENST00000435252 PITPNM1O00562 1244 aa13.35□□□□□ -0.27
GTF3C3-204ENST00000435252 CLEC11AQ9Y240 323 aa13.32□□□□□ -0.28
GTF3C3-204ENST00000435252 VASPP50552 380 aaPredicted RBP13.31□□□□□ -0.28
GTF3C3-204ENST00000435252 PLEKHG5O94827 1062 aa13.29□□□□□ -0.28
GTF3C3-204ENST00000435252 POTEHQ6S545 545 aa13.28□□□□□ -0.28
GTF3C3-204ENST00000435252 PRR29P0C7W0 189 aa13.24□□□□□ -0.29
GTF3C3-204ENST00000435252 PLCD3Q8N3E9 789 aa13.22□□□□□ -0.29
GTF3C3-204ENST00000435252 FXR2P51116 673 aaKnown RBP eCLIP13.2□□□□□ -0.3
GTF3C3-204ENST00000435252 MIER1Q8N108 512 aa13.19□□□□□ -0.3
GTF3C3-204ENST00000435252 ZBTB47Q9UFB7 747 aaPredicted RBP13.17□□□□□ -0.3
GTF3C3-204ENST00000435252 PIP4P2Q8N4L2 257 aa13.14□□□□□ -0.31
GTF3C3-204ENST00000435252 KLHL34Q8N239 644 aa13.11□□□□□ -0.31
GTF3C3-204ENST00000435252 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
GTF3C3-204ENST00000435252 IFNLR1Q8IU57 520 aaPredicted RBP13.06□□□□□ -0.32
GTF3C3-204ENST00000435252 PRKAR2AP13861 404 aaKnown RBP13.01□□□□□ -0.33
GTF3C3-204ENST00000435252 SPOCK2Q92563 424 aa13□□□□□ -0.33
GTF3C3-204ENST00000435252 CREBZFQ9NS37 354 aa13□□□□□ -0.33
GTF3C3-204ENST00000435252 NPM1P06748 294 aaKnown RBP eCLIP12.95□□□□□ -0.34
GTF3C3-204ENST00000435252 CHADLQ6NUI6 762 aa12.89□□□□□ -0.35
GTF3C3-204ENST00000435252 RTN4Q9NQC3 1192 aaKnown RBP12.86□□□□□ -0.35
GTF3C3-204ENST00000435252 FARP1Q9Y4F1 1045 aaPredicted RBP12.86□□□□□ -0.35
GTF3C3-204ENST00000435252 MNX1P50219 401 aaPredicted RBP12.84□□□□□ -0.35
GTF3C3-204ENST00000435252 FAM212AQ96EL1 285 aa12.8□□□□□ -0.36
GTF3C3-204ENST00000435252 GSE1Q14687 1217 aa12.79□□□□□ -0.36
GTF3C3-204ENST00000435252 HAX1O00165 279 aa12.77□□□□□ -0.37
GTF3C3-204ENST00000435252 CIZ1Q9ULV3 898 aaPredicted RBP12.77□□□□□ -0.37
GTF3C3-204ENST00000435252 NUBP1P53384 320 aa12.76□□□□□ -0.37
GTF3C3-204ENST00000435252 C19orf67A6NJJ6 358 aa12.75□□□□□ -0.37
GTF3C3-204ENST00000435252 PAK3O75914 559 aaPredicted RBP12.75□□□□□ -0.37
GTF3C3-204ENST00000435252 TRIM41Q8WV44 630 aa12.74□□□□□ -0.37
GTF3C3-204ENST00000435252 DCAF8Q5TAQ9 597 aa12.73□□□□□ -0.37
GTF3C3-204ENST00000435252 RASEFQ8IZ41 740 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms