RNA–Protein interactions for RNA: ENST00000431461.1

CDC40-204, Transcript of cell division cycle 40, humanhuman

TSL 3

Gene CDC40, Length 400 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40-204ENST00000431461 AEBP2Q6ZN18 517 aaPredicted RBP17.94■□□□□ 0.46
CDC40-204ENST00000431461 CHIC1Q5VXU3 224 aa16.91■□□□□ 0.3
CDC40-204ENST00000431461 SENP3Q9H4L4 574 aaPredicted RBP15.58■□□□□ 0.08
CDC40-204ENST00000431461 PHF23Q9BUL5 403 aaPredicted RBP15.17■□□□□ 0.02
CDC40-204ENST00000431461 POTEDQ86YR6 584 aa14.94□□□□□ -0.02
CDC40-204ENST00000431461 FOXD1Q16676 465 aa14.51□□□□□ -0.09
CDC40-204ENST00000431461 MSH5O43196 834 aa14.02□□□□□ -0.17
CDC40-204ENST00000431461 PIAS4Q8N2W9 510 aaPredicted RBP13.42□□□□□ -0.26
CDC40-204ENST00000431461 PLPPR3Q6T4P5 718 aa12.89□□□□□ -0.35
CDC40-204ENST00000431461 PPP6R1Q9UPN7 881 aa12.89□□□□□ -0.35
CDC40-204ENST00000431461 ADRA2BP18089 450 aa12.82□□□□□ -0.36
CDC40-204ENST00000431461 CACNB1Q02641 598 aaPredicted RBP12.46□□□□□ -0.41
CDC40-204ENST00000431461 DMRT2Q9Y5R5 561 aa12.2□□□□□ -0.46
CDC40-204ENST00000431461 MAPK8IP2Q13387 824 aaPredicted RBP11.99□□□□□ -0.49
CDC40-204ENST00000431461 SCAF1Q9H7N4 1312 aaKnown RBP11.89□□□□□ -0.51
CDC40-204ENST00000431461 RNF39Q9H2S5 420 aa11.82□□□□□ -0.52
CDC40-204ENST00000431461 DCAF8L1A6NGE4 600 aa11.71□□□□□ -0.53
CDC40-204ENST00000431461 C1QBPQ07021 282 aaKnown RBP11.65□□□□□ -0.54
CDC40-204ENST00000431461 POTEHQ6S545 545 aa11.58□□□□□ -0.56
CDC40-204ENST00000431461 HOXD11P31277 338 aaPredicted RBP11.43□□□□□ -0.58
CDC40-204ENST00000431461 DNAJC5BQ9UF47 199 aa11.29□□□□□ -0.6
CDC40-204ENST00000431461 PPP4R3CPQ6ZMV5 832 aa11.2□□□□□ -0.62
CDC40-204ENST00000431461 RNF216Q9NWF9 866 aaPredicted RBP11.15□□□□□ -0.62
CDC40-204ENST00000431461 CNKSR2Q8WXI2 1034 aa11.14□□□□□ -0.63
CDC40-204ENST00000431461 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.89□□□□□ -0.67
CDC40-204ENST00000431461 DSG3P32926 999 aa10.78□□□□□ -0.68
CDC40-204ENST00000431461 NCBP3Q53F19 620 aaKnown RBP10.74□□□□□ -0.69
CDC40-204ENST00000431461 CAPN15O75808 1086 aa10.67□□□□□ -0.7
CDC40-204ENST00000431461 SPINK5Q9NQ38 1064 aaPredicted RBP10.58□□□□□ -0.72
CDC40-204ENST00000431461 U3KPZ7 1027 aaPredicted RBP10.54□□□□□ -0.72
CDC40-204ENST00000431461 SP7Q8TDD2 431 aaPredicted RBP10.49□□□□□ -0.73
CDC40-204ENST00000431461 NPM3O75607 178 aaKnown RBP10.47□□□□□ -0.73
CDC40-204ENST00000431461 CHRDL2Q6WN34 429 aa10.43□□□□□ -0.74
CDC40-204ENST00000431461 RBM42Q9BTD8 480 aaKnown RBP10.42□□□□□ -0.74
CDC40-204ENST00000431461 APLP2Q06481 763 aa10.33□□□□□ -0.76
CDC40-204ENST00000431461 ZNF219Q9P2Y4 722 aaPredicted RBP10.33□□□□□ -0.76
CDC40-204ENST00000431461 ABCB7O75027 752 aa10.3□□□□□ -0.76
CDC40-204ENST00000431461 TRHP20396 242 aaPredicted RBP10.29□□□□□ -0.76
CDC40-204ENST00000431461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.15□□□□□ -0.78
CDC40-204ENST00000431461 HNRNPUL2Q1KMD3 747 aaKnown RBP10.15□□□□□ -0.78
CDC40-204ENST00000431461 SLC4A2P04920 1241 aa10.08□□□□□ -0.8
CDC40-204ENST00000431461 SAMD1Q6SPF0 538 aaPredicted RBP10.04□□□□□ -0.8
CDC40-204ENST00000431461 HAX1O00165 279 aa10.03□□□□□ -0.8
CDC40-204ENST00000431461 PIP4P2Q8N4L2 257 aa9.98□□□□□ -0.81
CDC40-204ENST00000431461 AKT1S1Q96B36 256 aa9.96□□□□□ -0.82
CDC40-204ENST00000431461 KCNA4P22459 653 aa9.89□□□□□ -0.83
CDC40-204ENST00000431461 PLSCR2Q9NRY7 297 aa9.85□□□□□ -0.83
CDC40-204ENST00000431461 POLA2Q14181 598 aa9.82□□□□□ -0.84
CDC40-204ENST00000431461 REM2Q8IYK8 340 aaPredicted RBP9.82□□□□□ -0.84
CDC40-204ENST00000431461 FXR2P51116 673 aaKnown RBP eCLIP9.81□□□□□ -0.84
CDC40-204ENST00000431461 LHX8Q68G74 356 aa9.81□□□□□ -0.84
CDC40-204ENST00000431461 MYCNP04198 464 aaPredicted RBP9.77□□□□□ -0.85
CDC40-204ENST00000431461 EVX2Q03828 476 aa9.74□□□□□ -0.85
CDC40-204ENST00000431461 PITPNM1O00562 1244 aa9.72□□□□□ -0.85
CDC40-204ENST00000431461 ZBTB12Q9Y330 459 aaPredicted RBP9.7□□□□□ -0.86
CDC40-204ENST00000431461 GABBR2O75899 941 aa9.57□□□□□ -0.88
CDC40-204ENST00000431461 OSCARQ8IYS5 282 aa9.55□□□□□ -0.88
CDC40-204ENST00000431461 C19orf67A6NJJ6 358 aa9.53□□□□□ -0.88
CDC40-204ENST00000431461 PRKAR2AP13861 404 aaKnown RBP9.47□□□□□ -0.89
CDC40-204ENST00000431461 FOXD4L1Q9NU39 408 aa9.43□□□□□ -0.9
CDC40-204ENST00000431461 ATF5Q9Y2D1 282 aaPredicted RBP9.43□□□□□ -0.9
CDC40-204ENST00000431461 SPDYE2BA6NHP3 402 aa9.32□□□□□ -0.92
CDC40-204ENST00000431461 SPDYE6P0CI01 402 aa9.32□□□□□ -0.92
CDC40-204ENST00000431461 SPDYE2Q495Y8 402 aa9.32□□□□□ -0.92
CDC40-204ENST00000431461 SLC4A1APQ9BWU0 796 aaKnown RBP9.32□□□□□ -0.92
CDC40-204ENST00000431461 SPDYE1Q8NFV5 336 aaPredicted RBP9.31□□□□□ -0.92
CDC40-204ENST00000431461 POTEIP0CG38 1075 aa9.3□□□□□ -0.92
CDC40-204ENST00000431461 POTEMA6NI47 508 aa9.29□□□□□ -0.92
CDC40-204ENST00000431461 CLCN6P51797 869 aa9.29□□□□□ -0.92
CDC40-204ENST00000431461 ATXN8OSP0DMR3 200 aa9.28□□□□□ -0.92
CDC40-204ENST00000431461 PCDH10Q9P2E7 1040 aa9.28□□□□□ -0.92
CDC40-204ENST00000431461 CLEC11AQ9Y240 323 aa9.28□□□□□ -0.92
CDC40-204ENST00000431461 FBLN2P98095 1184 aa9.23□□□□□ -0.93
CDC40-204ENST00000431461 POTEGQ6S5H5 508 aa9.23□□□□□ -0.93
CDC40-204ENST00000431461 DCBLD2Q96PD2 775 aa9.19□□□□□ -0.94
CDC40-204ENST00000431461 OTUD5Q96G74 571 aa9.14□□□□□ -0.95
CDC40-204ENST00000431461 CD44P16070 742 aaKnown RBP9.13□□□□□ -0.95
CDC40-204ENST00000431461 CHADLQ6NUI6 762 aa9.13□□□□□ -0.95
CDC40-204ENST00000431461 SSUH2Q9Y2M2 353 aa9.11□□□□□ -0.95
CDC40-204ENST00000431461 ZNF692Q9BU19 519 aaPredicted RBP9.08□□□□□ -0.96
CDC40-204ENST00000431461 ZBTB22O15209 634 aa9.05□□□□□ -0.96
CDC40-204ENST00000431461 PRR29P0C7W0 189 aa9.04□□□□□ -0.96
CDC40-204ENST00000431461 MKRN4PQ13434 485 aaPredicted RBP9.01□□□□□ -0.97
CDC40-204ENST00000431461 FARP1Q9Y4F1 1045 aaPredicted RBP8.98□□□□□ -0.97
CDC40-204ENST00000431461 ZNF579Q8NAF0 562 aaKnown RBP8.97□□□□□ -0.97
CDC40-204ENST00000431461 POTEB2H3BUK9 544 aa8.96□□□□□ -0.98
CDC40-204ENST00000431461 PABPN1Q86U42 306 aaKnown RBP eCLIP8.91□□□□□ -0.98
CDC40-204ENST00000431461 ZRANB1Q9UGI0 708 aa8.87□□□□□ -0.99
CDC40-204ENST00000431461 GALR2O43603 387 aaPredicted RBP8.86□□□□□ -0.99
CDC40-204ENST00000431461 MAMSTRQ6ZN01 415 aa8.86□□□□□ -0.99
CDC40-204ENST00000431461 LCE2DQ5TA82 110 aaPredicted RBP8.82□□□□□ -1
CDC40-204ENST00000431461 FAM163AQ96GL9 167 aaPredicted RBP8.79□□□□□ -1
CDC40-204ENST00000431461 METRNQ9UJH8 293 aa8.75□□□□□ -1.01
CDC40-204ENST00000431461 SCUBE2Q9NQ36 999 aa8.74□□□□□ -1.01
CDC40-204ENST00000431461 C7P10643 843 aa8.73□□□□□ -1.01
CDC40-204ENST00000431461 SLC39A7Q92504 469 aa8.73□□□□□ -1.01
CDC40-204ENST00000431461 CDAN1Q8IWY9 1227 aa8.72□□□□□ -1.01
CDC40-204ENST00000431461 STAG3Q9UJ98 1225 aa8.72□□□□□ -1.01
CDC40-204ENST00000431461 PAK3O75914 559 aaPredicted RBP8.71□□□□□ -1.02
CDC40-204ENST00000431461 PELP1Q8IZL8 1130 aaKnown RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms