RNA–Protein interactions for RNA: ENST00000425071.5

HDAC9-209, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-209ENST00000425071 AEBP2Q6ZN18 517 aaPredicted RBP20.5■□□□□ 0.87
HDAC9-209ENST00000425071 CHIC1Q5VXU3 224 aa20.17■□□□□ 0.82
HDAC9-209ENST00000425071 PHF23Q9BUL5 403 aaPredicted RBP17.67■□□□□ 0.42
HDAC9-209ENST00000425071 SENP3Q9H4L4 574 aaPredicted RBP17.52■□□□□ 0.4
HDAC9-209ENST00000425071 PLPPR3Q6T4P5 718 aa16.46■□□□□ 0.23
HDAC9-209ENST00000425071 FOXD1Q16676 465 aa16.16■□□□□ 0.18
HDAC9-209ENST00000425071 PPP6R1Q9UPN7 881 aa15.56■□□□□ 0.08
HDAC9-209ENST00000425071 ADRA2BP18089 450 aa15.55■□□□□ 0.08
HDAC9-209ENST00000425071 PIAS4Q8N2W9 510 aaPredicted RBP15.28■□□□□ 0.04
HDAC9-209ENST00000425071 MSH5O43196 834 aa15.06■□□□□ 0
HDAC9-209ENST00000425071 POTEDQ86YR6 584 aa14.55□□□□□ -0.08
HDAC9-209ENST00000425071 PPP4R3CPQ6ZMV5 832 aa14.45□□□□□ -0.1
HDAC9-209ENST00000425071 SCAF1Q9H7N4 1312 aaKnown RBP14.41□□□□□ -0.1
HDAC9-209ENST00000425071 NCBP3Q53F19 620 aaKnown RBP14.19□□□□□ -0.14
HDAC9-209ENST00000425071 KCNA4P22459 653 aa14.12□□□□□ -0.15
HDAC9-209ENST00000425071 CNKSR2Q8WXI2 1034 aa14.09□□□□□ -0.15
HDAC9-209ENST00000425071 MAPK8IP2Q13387 824 aaPredicted RBP14.06□□□□□ -0.16
HDAC9-209ENST00000425071 DMRT2Q9Y5R5 561 aa13.97□□□□□ -0.17
HDAC9-209ENST00000425071 NPM3O75607 178 aaKnown RBP13.86□□□□□ -0.19
HDAC9-209ENST00000425071 RNF216Q9NWF9 866 aaPredicted RBP13.81□□□□□ -0.2
HDAC9-209ENST00000425071 HOXD11P31277 338 aaPredicted RBP13.72□□□□□ -0.21
HDAC9-209ENST00000425071 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
HDAC9-209ENST00000425071 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
HDAC9-209ENST00000425071 DCAF8L1A6NGE4 600 aa13.29□□□□□ -0.28
HDAC9-209ENST00000425071 EHMT2Q96KQ7 1210 aa13.1□□□□□ -0.31
HDAC9-209ENST00000425071 FOXD4L1Q9NU39 408 aa13.06□□□□□ -0.32
HDAC9-209ENST00000425071 SLC4A2P04920 1241 aa13.05□□□□□ -0.32
HDAC9-209ENST00000425071 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.05□□□□□ -0.32
HDAC9-209ENST00000425071 CSRNP3Q8WYN3 585 aa12.98□□□□□ -0.33
HDAC9-209ENST00000425071 ZBTB22O15209 634 aa12.95□□□□□ -0.34
HDAC9-209ENST00000425071 CACNB1Q02641 598 aaPredicted RBP12.88□□□□□ -0.35
HDAC9-209ENST00000425071 MYCNP04198 464 aaPredicted RBP12.87□□□□□ -0.35
HDAC9-209ENST00000425071 RNF39Q9H2S5 420 aa12.85□□□□□ -0.35
HDAC9-209ENST00000425071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.82□□□□□ -0.36
HDAC9-209ENST00000425071 HNRNPUL2Q1KMD3 747 aaKnown RBP12.82□□□□□ -0.36
HDAC9-209ENST00000425071 U3KPZ7 1027 aaPredicted RBP12.8□□□□□ -0.36
HDAC9-209ENST00000425071 SAMD1Q6SPF0 538 aaPredicted RBP12.73□□□□□ -0.37
HDAC9-209ENST00000425071 C1QBPQ07021 282 aaKnown RBP12.72□□□□□ -0.37
HDAC9-209ENST00000425071 APLP2Q06481 763 aa12.7□□□□□ -0.38
HDAC9-209ENST00000425071 ATXN8OSP0DMR3 200 aa12.68□□□□□ -0.38
HDAC9-209ENST00000425071 ZNF219Q9P2Y4 722 aaPredicted RBP12.43□□□□□ -0.42
HDAC9-209ENST00000425071 CAPN15O75808 1086 aa12.39□□□□□ -0.43
HDAC9-209ENST00000425071 SPINK5Q9NQ38 1064 aaPredicted RBP12.39□□□□□ -0.43
HDAC9-209ENST00000425071 ATF5Q9Y2D1 282 aaPredicted RBP12.39□□□□□ -0.43
HDAC9-209ENST00000425071 TRHP20396 242 aaPredicted RBP12.33□□□□□ -0.44
HDAC9-209ENST00000425071 DSG3P32926 999 aa12.19□□□□□ -0.46
HDAC9-209ENST00000425071 POLA2Q14181 598 aa12.16□□□□□ -0.46
HDAC9-209ENST00000425071 ABCB7O75027 752 aa12.09□□□□□ -0.47
HDAC9-209ENST00000425071 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-209ENST00000425071 FBLN2P98095 1184 aa12.02□□□□□ -0.49
HDAC9-209ENST00000425071 MKRN4PQ13434 485 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-209ENST00000425071 SPDYE2BA6NHP3 402 aa11.73□□□□□ -0.53
HDAC9-209ENST00000425071 SPDYE6P0CI01 402 aa11.73□□□□□ -0.53
HDAC9-209ENST00000425071 FKBP8Q14318 412 aa11.73□□□□□ -0.53
HDAC9-209ENST00000425071 SPDYE2Q495Y8 402 aa11.73□□□□□ -0.53
HDAC9-209ENST00000425071 SPDYE4A6NLX3 237 aa11.71□□□□□ -0.53
HDAC9-209ENST00000425071 OSCARQ8IYS5 282 aa11.71□□□□□ -0.53
HDAC9-209ENST00000425071 RBM42Q9BTD8 480 aaKnown RBP11.71□□□□□ -0.53
HDAC9-209ENST00000425071 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.54
HDAC9-209ENST00000425071 SSUH2Q9Y2M2 353 aa11.6□□□□□ -0.55
HDAC9-209ENST00000425071 PROM2Q8N271 834 aa11.55□□□□□ -0.56
HDAC9-209ENST00000425071 AKT1S1Q96B36 256 aa11.55□□□□□ -0.56
HDAC9-209ENST00000425071 PABPN1Q86U42 306 aaKnown RBP eCLIP11.47□□□□□ -0.57
HDAC9-209ENST00000425071 FBXO3Q9UK99 471 aa11.44□□□□□ -0.58
HDAC9-209ENST00000425071 POTEHQ6S545 545 aa11.42□□□□□ -0.58
HDAC9-209ENST00000425071 STAG3Q9UJ98 1225 aa11.41□□□□□ -0.58
HDAC9-209ENST00000425071 REM2Q8IYK8 340 aaPredicted RBP11.37□□□□□ -0.59
HDAC9-209ENST00000425071 SPDYE1Q8NFV5 336 aaPredicted RBP11.36□□□□□ -0.59
HDAC9-209ENST00000425071 CHRDL2Q6WN34 429 aa11.23□□□□□ -0.61
HDAC9-209ENST00000425071 CLEC11AQ9Y240 323 aa11.23□□□□□ -0.61
HDAC9-209ENST00000425071 PITPNM1O00562 1244 aa11.21□□□□□ -0.61
HDAC9-209ENST00000425071 PRR29P0C7W0 189 aa11.19□□□□□ -0.62
HDAC9-209ENST00000425071 VASPP50552 380 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-209ENST00000425071 PLEKHG5O94827 1062 aa11.14□□□□□ -0.63
HDAC9-209ENST00000425071 MIER1Q8N108 512 aa11.11□□□□□ -0.63
HDAC9-209ENST00000425071 PLCD3Q8N3E9 789 aa11.1□□□□□ -0.63
HDAC9-209ENST00000425071 ZBTB47Q9UFB7 747 aaPredicted RBP11.08□□□□□ -0.64
HDAC9-209ENST00000425071 FXR2P51116 673 aaKnown RBP eCLIP11.04□□□□□ -0.64
HDAC9-209ENST00000425071 CREBZFQ9NS37 354 aa11.01□□□□□ -0.65
HDAC9-209ENST00000425071 IFNLR1Q8IU57 520 aaPredicted RBP11□□□□□ -0.65
HDAC9-209ENST00000425071 KLHL34Q8N239 644 aa10.98□□□□□ -0.65
HDAC9-209ENST00000425071 PIP4P2Q8N4L2 257 aa10.97□□□□□ -0.65
HDAC9-209ENST00000425071 PRKAR2AP13861 404 aaKnown RBP10.95□□□□□ -0.66
HDAC9-209ENST00000425071 NPM1P06748 294 aaKnown RBP eCLIP10.93□□□□□ -0.66
HDAC9-209ENST00000425071 SPOCK2Q92563 424 aa10.92□□□□□ -0.66
HDAC9-209ENST00000425071 MNX1P50219 401 aaPredicted RBP10.9□□□□□ -0.66
HDAC9-209ENST00000425071 CHADLQ6NUI6 762 aa10.9□□□□□ -0.66
HDAC9-209ENST00000425071 AMER1Q5JTC6 1135 aaPredicted RBP10.88□□□□□ -0.67
HDAC9-209ENST00000425071 FARP1Q9Y4F1 1045 aaPredicted RBP10.88□□□□□ -0.67
HDAC9-209ENST00000425071 NUBP1P53384 320 aa10.8□□□□□ -0.68
HDAC9-209ENST00000425071 HAX1O00165 279 aa10.78□□□□□ -0.68
HDAC9-209ENST00000425071 GSE1Q14687 1217 aa10.77□□□□□ -0.69
HDAC9-209ENST00000425071 FAM212AQ96EL1 285 aa10.76□□□□□ -0.69
HDAC9-209ENST00000425071 SP7Q8TDD2 431 aaPredicted RBP10.75□□□□□ -0.69
HDAC9-209ENST00000425071 TRIM41Q8WV44 630 aa10.73□□□□□ -0.69
HDAC9-209ENST00000425071 PAK3O75914 559 aaPredicted RBP10.72□□□□□ -0.69
HDAC9-209ENST00000425071 DCAF8Q5TAQ9 597 aa10.71□□□□□ -0.69
HDAC9-209ENST00000425071 RTN4Q9NQC3 1192 aaKnown RBP10.71□□□□□ -0.69
HDAC9-209ENST00000425071 RASEFQ8IZ41 740 aa10.7□□□□□ -0.7
HDAC9-209ENST00000425071 CIZ1Q9ULV3 898 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms