RNA–Protein interactions for RNA: ENST00000328495.9

CCDC144A-201, Transcript of coiled-coil domain containing 144A, humanhuman

TSL 2

Gene CCDC144A, Length 3,375 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144A-201ENST00000328495 AEBP2Q6ZN18 517 aaPredicted RBP9.63□□□□□ -0.87
CCDC144A-201ENST00000328495 CHIC1Q5VXU3 224 aa9.37□□□□□ -0.91
CCDC144A-201ENST00000328495 SENP3Q9H4L4 574 aaPredicted RBP8.24□□□□□ -1.09
CCDC144A-201ENST00000328495 PHF23Q9BUL5 403 aaPredicted RBP8.19□□□□□ -1.1
CCDC144A-201ENST00000328495 FOXD1Q16676 465 aa7.62□□□□□ -1.19
CCDC144A-201ENST00000328495 PLPPR3Q6T4P5 718 aa7.59□□□□□ -1.19
CCDC144A-201ENST00000328495 ADRA2BP18089 450 aa7.26□□□□□ -1.25
CCDC144A-201ENST00000328495 PPP6R1Q9UPN7 881 aa7.25□□□□□ -1.25
CCDC144A-201ENST00000328495 PIAS4Q8N2W9 510 aaPredicted RBP7.2□□□□□ -1.26
CCDC144A-201ENST00000328495 MSH5O43196 834 aa7.1□□□□□ -1.27
CCDC144A-201ENST00000328495 SCAF1Q9H7N4 1312 aaKnown RBP6.69□□□□□ -1.34
CCDC144A-201ENST00000328495 PPP4R3CPQ6ZMV5 832 aa6.66□□□□□ -1.34
CCDC144A-201ENST00000328495 MAPK8IP2Q13387 824 aaPredicted RBP6.59□□□□□ -1.35
CCDC144A-201ENST00000328495 POTEDQ86YR6 584 aa6.57□□□□□ -1.36
CCDC144A-201ENST00000328495 DMRT2Q9Y5R5 561 aa6.55□□□□□ -1.36
CCDC144A-201ENST00000328495 CNKSR2Q8WXI2 1034 aa6.51□□□□□ -1.37
CCDC144A-201ENST00000328495 NCBP3Q53F19 620 aaKnown RBP6.5□□□□□ -1.37
CCDC144A-201ENST00000328495 KCNA4P22459 653 aa6.41□□□□□ -1.38
CCDC144A-201ENST00000328495 RNF216Q9NWF9 866 aaPredicted RBP6.4□□□□□ -1.39
CCDC144A-201ENST00000328495 HOXD11P31277 338 aaPredicted RBP6.38□□□□□ -1.39
CCDC144A-201ENST00000328495 NPM3O75607 178 aaKnown RBP6.36□□□□□ -1.39
CCDC144A-201ENST00000328495 DCAF8L1A6NGE4 600 aa6.29□□□□□ -1.4
CCDC144A-201ENST00000328495 DNAJC5BQ9UF47 199 aa6.2□□□□□ -1.42
CCDC144A-201ENST00000328495 SLC4A1APQ9BWU0 796 aaKnown RBP6.11□□□□□ -1.43
CCDC144A-201ENST00000328495 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.1□□□□□ -1.43
CCDC144A-201ENST00000328495 RNF39Q9H2S5 420 aa6.05□□□□□ -1.44
CCDC144A-201ENST00000328495 SLC4A2P04920 1241 aa6.01□□□□□ -1.45
CCDC144A-201ENST00000328495 C1QBPQ07021 282 aaKnown RBP5.99□□□□□ -1.45
CCDC144A-201ENST00000328495 CACNB1Q02641 598 aaPredicted RBP5.97□□□□□ -1.45
CCDC144A-201ENST00000328495 U3KPZ7 1027 aaPredicted RBP5.97□□□□□ -1.45
CCDC144A-201ENST00000328495 FOXD4L1Q9NU39 408 aa5.95□□□□□ -1.46
CCDC144A-201ENST00000328495 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.91□□□□□ -1.46
CCDC144A-201ENST00000328495 MYCNP04198 464 aaPredicted RBP5.91□□□□□ -1.46
CCDC144A-201ENST00000328495 HNRNPUL2Q1KMD3 747 aaKnown RBP5.91□□□□□ -1.46
CCDC144A-201ENST00000328495 APLP2Q06481 763 aa5.89□□□□□ -1.47
CCDC144A-201ENST00000328495 SAMD1Q6SPF0 538 aaPredicted RBP5.88□□□□□ -1.47
CCDC144A-201ENST00000328495 ZBTB22O15209 634 aa5.87□□□□□ -1.47
CCDC144A-201ENST00000328495 EHMT2Q96KQ7 1210 aa5.83□□□□□ -1.48
CCDC144A-201ENST00000328495 CAPN15O75808 1086 aa5.83□□□□□ -1.48
CCDC144A-201ENST00000328495 SPINK5Q9NQ38 1064 aaPredicted RBP5.82□□□□□ -1.48
CCDC144A-201ENST00000328495 ZNF219Q9P2Y4 722 aaPredicted RBP5.8□□□□□ -1.48
CCDC144A-201ENST00000328495 CSRNP3Q8WYN3 585 aa5.78□□□□□ -1.48
CCDC144A-201ENST00000328495 TRHP20396 242 aaPredicted RBP5.77□□□□□ -1.49
CCDC144A-201ENST00000328495 ATXN8OSP0DMR3 200 aa5.75□□□□□ -1.49
CCDC144A-201ENST00000328495 DSG3P32926 999 aa5.73□□□□□ -1.49
CCDC144A-201ENST00000328495 ATF5Q9Y2D1 282 aaPredicted RBP5.7□□□□□ -1.5
CCDC144A-201ENST00000328495 ABCB7O75027 752 aa5.69□□□□□ -1.5
CCDC144A-201ENST00000328495 POLA2Q14181 598 aa5.65□□□□□ -1.5
CCDC144A-201ENST00000328495 ZBTB12Q9Y330 459 aaPredicted RBP5.6□□□□□ -1.51
CCDC144A-201ENST00000328495 FBLN2P98095 1184 aa5.53□□□□□ -1.52
CCDC144A-201ENST00000328495 RBM42Q9BTD8 480 aaKnown RBP5.51□□□□□ -1.53
CCDC144A-201ENST00000328495 OSCARQ8IYS5 282 aa5.47□□□□□ -1.53
CCDC144A-201ENST00000328495 MKRN4PQ13434 485 aaPredicted RBP5.46□□□□□ -1.53
CCDC144A-201ENST00000328495 SPDYE2BA6NHP3 402 aa5.42□□□□□ -1.54
CCDC144A-201ENST00000328495 SPDYE6P0CI01 402 aa5.42□□□□□ -1.54
CCDC144A-201ENST00000328495 SPDYE2Q495Y8 402 aa5.42□□□□□ -1.54
CCDC144A-201ENST00000328495 AKT1S1Q96B36 256 aa5.4□□□□□ -1.55
CCDC144A-201ENST00000328495 ZNF692Q9BU19 519 aaPredicted RBP5.38□□□□□ -1.55
CCDC144A-201ENST00000328495 SSUH2Q9Y2M2 353 aa5.36□□□□□ -1.55
CCDC144A-201ENST00000328495 DNAJC5Q9H3Z4 198 aa5.35□□□□□ -1.55
CCDC144A-201ENST00000328495 SPDYE4A6NLX3 237 aa5.33□□□□□ -1.56
CCDC144A-201ENST00000328495 REM2Q8IYK8 340 aaPredicted RBP5.33□□□□□ -1.56
CCDC144A-201ENST00000328495 PABPN1Q86U42 306 aaKnown RBP eCLIP5.3□□□□□ -1.56
CCDC144A-201ENST00000328495 SPDYE1Q8NFV5 336 aaPredicted RBP5.29□□□□□ -1.56
CCDC144A-201ENST00000328495 CHRDL2Q6WN34 429 aa5.28□□□□□ -1.56
CCDC144A-201ENST00000328495 PITPNM1O00562 1244 aa5.27□□□□□ -1.57
CCDC144A-201ENST00000328495 FKBP8Q14318 412 aa5.26□□□□□ -1.57
CCDC144A-201ENST00000328495 CLEC11AQ9Y240 323 aa5.25□□□□□ -1.57
CCDC144A-201ENST00000328495 STAG3Q9UJ98 1225 aa5.22□□□□□ -1.57
CCDC144A-201ENST00000328495 PROM2Q8N271 834 aa5.22□□□□□ -1.57
CCDC144A-201ENST00000328495 PRR29P0C7W0 189 aa5.2□□□□□ -1.58
CCDC144A-201ENST00000328495 POTEHQ6S545 545 aa5.2□□□□□ -1.58
CCDC144A-201ENST00000328495 FXR2P51116 673 aaKnown RBP eCLIP5.18□□□□□ -1.58
CCDC144A-201ENST00000328495 PIP4P2Q8N4L2 257 aa5.18□□□□□ -1.58
CCDC144A-201ENST00000328495 PRKAR2AP13861 404 aaKnown RBP5.15□□□□□ -1.59
CCDC144A-201ENST00000328495 FBXO3Q9UK99 471 aa5.12□□□□□ -1.59
CCDC144A-201ENST00000328495 CHADLQ6NUI6 762 aa5.11□□□□□ -1.59
CCDC144A-201ENST00000328495 PLEKHG5O94827 1062 aa5.09□□□□□ -1.59
CCDC144A-201ENST00000328495 CREBZFQ9NS37 354 aa5.09□□□□□ -1.59
CCDC144A-201ENST00000328495 FARP1Q9Y4F1 1045 aaPredicted RBP5.07□□□□□ -1.6
CCDC144A-201ENST00000328495 MIER1Q8N108 512 aa5.07□□□□□ -1.6
CCDC144A-201ENST00000328495 PLCD3Q8N3E9 789 aa5.07□□□□□ -1.6
CCDC144A-201ENST00000328495 HAX1O00165 279 aa5.05□□□□□ -1.6
CCDC144A-201ENST00000328495 NPM1P06748 294 aaKnown RBP eCLIP5.04□□□□□ -1.6
CCDC144A-201ENST00000328495 VASPP50552 380 aaPredicted RBP5.04□□□□□ -1.6
CCDC144A-201ENST00000328495 ZBTB47Q9UFB7 747 aaPredicted RBP5.04□□□□□ -1.6
CCDC144A-201ENST00000328495 MNX1P50219 401 aaPredicted RBP5.02□□□□□ -1.61
CCDC144A-201ENST00000328495 C19orf67A6NJJ6 358 aa5.01□□□□□ -1.61
CCDC144A-201ENST00000328495 CD44P16070 742 aaKnown RBP5□□□□□ -1.61
CCDC144A-201ENST00000328495 PAK3O75914 559 aaPredicted RBP4.99□□□□□ -1.61
CCDC144A-201ENST00000328495 KLHL34Q8N239 644 aa4.98□□□□□ -1.61
CCDC144A-201ENST00000328495 SP7Q8TDD2 431 aaPredicted RBP4.97□□□□□ -1.61
CCDC144A-201ENST00000328495 EVX2Q03828 476 aa4.96□□□□□ -1.62
CCDC144A-201ENST00000328495 ZRANB1Q9UGI0 708 aa4.96□□□□□ -1.62
CCDC144A-201ENST00000328495 IFNLR1Q8IU57 520 aaPredicted RBP4.93□□□□□ -1.62
CCDC144A-201ENST00000328495 ZNF579Q8NAF0 562 aaKnown RBP4.93□□□□□ -1.62
CCDC144A-201ENST00000328495 TSPYL2Q9H2G4 693 aaPredicted RBP4.93□□□□□ -1.62
CCDC144A-201ENST00000328495 NUBP1P53384 320 aa4.93□□□□□ -1.62
CCDC144A-201ENST00000328495 FAM212AQ96EL1 285 aa4.93□□□□□ -1.62
CCDC144A-201ENST00000328495 RASEFQ8IZ41 740 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms