RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 AXLP30530 894 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SRP54P61011 504 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 RPS14P62263 151 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 ADARB1P78563 741 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 GRSF1Q12849 480 aaKnown RBP eCLIP10.81□□□□□ -0.68
CLN3-244ENST00000636147 USP39Q53GS9 565 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 OR4F3Q6IEY1 312 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 VTCN1Q7Z7D3 282 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 PHF10Q8WUB8 498 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 UBE2FQ969M7 185 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 NECTIN3Q9NQS3 549 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SPEF1Q9Y4P9 236 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 NME7Q9Y5B8 376 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 FAM240BA0A1B0GVZ2 78 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 NUAK1O60285 661 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 GUCY1B2O75343 617 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SERPINI2O75830 405 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ITGB1P05556 798 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ATXN8OSP0DMR3 200 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 HOXA11P31270 313 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 GRK4P32298 578 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 IFNA8P32881 189 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 HNF4AP41235 474 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SLC11A2P49281 568 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 STC1P52823 247 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 RPP38P78345 283 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 CTXN3Q4LDR2 81 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 CASP12Q6UXS9 341 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 FLCNQ8NFG4 579 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 L3HYPDHQ96EM0 354 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 C1GALT1C1Q96EU7 318 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ATG10Q9H0Y0 220 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 TUBB1Q9H4B7 451 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ZNF385DQ9H6B1 395 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 RAB23Q9ULC3 237 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ST3GAL5Q9UNP4 418 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 DNMT3AQ9Y6K1 912 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 LTBP4Q8N2S1 1624 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 A0A096LPI6 279 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 LCHNA4D1U4 455 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ZSCAN5BA6NJL1 495 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ACOX3O15254 700 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ANXA5P08758 320 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 RHOQP17081 205 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 C21orf33P30042 268 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 CLK3P49761 638 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 CDKN1CP49918 316 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 ABRAXAS2Q15018 415 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 TSTQ16762 297 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 ZNF648Q5T619 568 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 AGAP7PQ5VUJ5 663 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 KANK2Q63ZY3 851 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SMYD5Q6GMV2 418 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 GLB1LQ6UWU2 654 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 ZFAND4Q86XD8 727 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 FAM83FQ8NEG4 500 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 NELL1Q92832 810 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SLC38A4Q969I6 547 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 SMIM14Q96QK8 99 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 UHRF1Q96T88 793 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 TRIT1Q9H3H1 467 aaKnown RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 GPBP1L1Q9HC44 474 aaPredicted RBP10.81□□□□□ -0.68
CLN3-244ENST00000636147 FAM105AQ9NUU6 356 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 UTS2RQ9UKP6 389 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 IFT52Q9Y366 437 aa10.81□□□□□ -0.68
CLN3-244ENST00000636147 EVPLQ92817 2033 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TARM1B6A8C7 271 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 FFAR2O15552 330 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 UPK1BO75841 260 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 IL6P05231 212 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 STSP08842 583 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 PFKLP17858 780 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 GGT1P19440 569 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 DGKAP23743 735 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 MLLT10P55197 1068 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 MLLT6P55198 1093 aaPredicted RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 AAK1Q2M2I8 961 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 ZNF284Q2VY69 593 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 CYP27C1Q4G0S4 372 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 SNAP47Q5SQN1 464 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TMEM207Q6UWW9 146 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 CYP4Z1Q86W10 505 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 FAM217AQ8IXS0 508 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 FAM9CQ8IZT9 166 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 OR8H1Q8NGG4 311 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 RHOXF1Q8NHV9 184 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 PROKR1Q8TCW9 393 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 NETO1Q8TDF5 533 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 RDH12Q96NR8 316 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 CLN6Q9NWW5 311 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 THUMPD1Q9NXG2 353 aaKnown RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 AGO1Q9UL18 857 aaKnown RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 SPATA2Q9UM82 520 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 SNX6Q9UNH7 406 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TRIP11Q15643 1979 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 KIF13BQ9NQT8 1826 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 GJB3O75712 270 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 STK16O75716 305 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 HRH2P25021 359 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 DNAJA1P31689 397 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms