RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TFB2MQ9H5Q4 396 aaKnown RBP17.56■□□□□ 0.4
CLN3-239ENST00000628023 XKR8Q9H6D3 395 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 HRASLS2Q9NWW9 162 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.56■□□□□ 0.4
CLN3-239ENST00000628023 PCDHGA8Q9Y5G5 932 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 V9GYY5 206 aaPredicted RBP17.56■□□□□ 0.4
CLN3-239ENST00000628023 MN1Q10571 1320 aaPredicted RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 GSAPA4D1B5 854 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 A8MU76 341 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 EIF3FO00303 357 aaPredicted RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 KLK10O43240 276 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 RASSF9O75901 435 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 CATP04040 527 aaKnown RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 MPC1LP0DKB6 136 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 THRAP10827 490 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 TNFRSF8P28908 595 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 SHMT2P34897 504 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 SPRP35270 261 aaPredicted RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 LIMK2P53671 638 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 ZFP36L1Q07352 338 aaKnown RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 TRA2AQ13595 282 aaKnown RBP eCLIP17.55■□□□□ 0.4
CLN3-239ENST00000628023 GRTP1Q5TC63 336 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 PAQR3Q6TCH7 311 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 ZNF574Q6ZN55 896 aaPredicted RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 FAM92BQ6ZTR7 304 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 NEK10Q6ZWH5 1172 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 PIWIL4Q7Z3Z4 852 aaKnown RBP17.55■□□□□ 0.4
CLN3-239ENST00000628023 MYO1HQ8N1T3 1032 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 RCBTB1Q8NDN9 531 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 RAD51AP1Q96B01 352 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 LINGO1Q96FE5 620 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 SLC46A1Q96NT5 459 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 ACSS3Q9H6R3 686 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 ANKZF1Q9H8Y5 726 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 ASCL3Q9NQ33 180 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 CIDEBQ9UHD4 219 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 SLC39A10Q9ULF5 831 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 ICKQ9UPZ9 632 aa17.55■□□□□ 0.4
CLN3-239ENST00000628023 A0A087WUV0 522 aaPredicted RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 CCDC187A0A096LP49 1063 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 MATN4O95460 622 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 C1orf105O95561 183 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 C1QAP02745 245 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 FAM153BP0C7A2 387 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 POLR2CP19387 275 aaPredicted RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 CD9P21926 228 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 MAP4P27816 1152 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 CSTF2P33240 577 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-239ENST00000628023 MLLT3P42568 568 aaPredicted RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 PMS2P54278 862 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 IL2P60568 153 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 TIAL1Q01085 375 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-239ENST00000628023 EIF3IQ13347 325 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 USP10Q14694 798 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 FAM153CQ494X1 144 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 UBAP2Q5T6F2 1119 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 TRMT10CQ7L0Y3 403 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 SPNS2Q8IVW8 549 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 WDR36Q8NI36 951 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 UHMK1Q8TAS1 419 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 TSPAN17Q96FV3 270 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 LIN37Q96GY3 246 aaPredicted RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 CMKLR1Q99788 373 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 RAB11FIP5Q9BXF6 653 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 MTO1Q9Y2Z2 717 aaKnown RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 IKBKGQ9Y6K9 419 aa17.54■□□□□ 0.4
CLN3-239ENST00000628023 COL27A1Q8IZC6 1860 aaPredicted RBP17.54■□□□□ 0.4
CLN3-239ENST00000628023 PABPN1LA6NDY0 278 aaKnown RBP17.53■□□□□ 0.4
CLN3-239ENST00000628023 MATN2O00339 956 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 FAM155BO75949 473 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 MYBL2P10244 700 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 TAS2R39P59534 338 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 PPP1CAP62136 330 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 POU4F1Q01851 419 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 RHDQ02161 417 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 ZNF460Q14592 562 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 TAF1BQ53T94 588 aaPredicted RBP17.53■□□□□ 0.4
CLN3-239ENST00000628023 RAB11FIP2Q7L804 512 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 EEF1AKMT1Q8WVE0 214 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 GPR22Q99680 433 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 NRTNQ99748 197 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 RAB33BQ9H082 229 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 GPAMQ9HCL2 828 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 EPHA6Q9UF33 1036 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 LOXL2Q9Y4K0 774 aa17.53■□□□□ 0.4
CLN3-239ENST00000628023 ARHGEF33A8MVX0 844 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 C2orf74A8MZ97 194 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 ERVH48-1M5A8F1 160 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 BTN3A1O00481 513 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 PLD2O14939 933 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 HGSO14964 777 aaPredicted RBP17.52■□□□□ 0.4
CLN3-239ENST00000628023 PSIP1O75475 530 aaKnown RBP17.52■□□□□ 0.4
CLN3-239ENST00000628023 SYF2O95926 243 aaKnown RBP17.52■□□□□ 0.4
CLN3-239ENST00000628023 C9P02748 559 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 INHBAP08476 426 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 JMJD7P0C870 316 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 PKLRP30613 574 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 RAB28P51157 221 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 PGGT1BP53609 377 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 ARHGAP40Q5TG30 622 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms