RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 EPB41L1Q9H4G0 881 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 PARVBQ9HBI1 364 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 OGFRQ9NZT2 677 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 PDE10AQ9Y233 779 aa19.14■□□□□ 0.65
UPF3A-211ENST00000618700 A0A1W2PQM1 296 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 KRT87PA6NCN2 255 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 CASC3O15234 703 aaKnown RBP19.13■□□□□ 0.65
UPF3A-211ENST00000618700 KLHL2O95198 593 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 KCNK5O95279 499 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 ENO2P09104 434 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-211ENST00000618700 ERGP11308 486 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 KRT15P19012 456 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 CYP2A7P20853 494 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 ALDH4A1P30038 563 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 SIM1P81133 766 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-211ENST00000618700 SQSTM1Q13501 440 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 TSNQ15631 228 aaKnown RBP19.13■□□□□ 0.65
UPF3A-211ENST00000618700 TTC23LQ6PF05 361 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 SH2D5Q6ZV89 423 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 Q8N9G6 341 aaPredicted RBP19.13■□□□□ 0.65
UPF3A-211ENST00000618700 DENND1AQ8TEH3 1009 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 LCN9Q8WX39 176 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 KIAA1191Q96A73 305 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 PTERQ96BW5 349 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 NXNL1Q96CM4 212 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 GPR78Q96P69 363 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 UNKQ9C0B0 810 aaKnown RBP19.13■□□□□ 0.65
UPF3A-211ENST00000618700 PCMTD2Q9NV79 361 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 SPATA7Q9P0W8 599 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 PLAGL1Q9UM63 463 aa19.13■□□□□ 0.65
UPF3A-211ENST00000618700 COL27A1Q8IZC6 1860 aaPredicted RBP19.12■□□□□ 0.65
UPF3A-211ENST00000618700 A0A1W2PPM1 405 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 CCDC189A1A4V9 331 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 FOXO6A8MYZ6 492 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 NTN3O00634 580 aaPredicted RBP19.12■□□□□ 0.65
UPF3A-211ENST00000618700 ZW10O43264 779 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 KDM1AO60341 852 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 UBXN7O94888 489 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 MT-ND3P03897 115 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 RPLP0P05388 317 aaKnown RBP19.12■□□□□ 0.65
UPF3A-211ENST00000618700 FTH1P19P0C7X4 201 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 COL6A2P12110 1019 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 MAP4P27816 1152 aaKnown RBP19.12■□□□□ 0.65
UPF3A-211ENST00000618700 CD1CP29017 333 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 SHMT2P34897 504 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 CAPZBP47756 277 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 RAB28P51157 221 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 CCL7P80098 99 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 FAM83EQ2M2I3 478 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 CEP85LQ5SZL2 805 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 DGLUCYQ7Z3D6 616 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 SLCO6A1Q86UG4 719 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 AMIGO1Q86WK6 493 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 PLD6Q8N2A8 252 aaKnown RBP19.12■□□□□ 0.65
UPF3A-211ENST00000618700 OR9A1PQ8NGU1 263 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 OR10G6Q8NH81 332 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 RSC1A1Q92681 617 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 PKP4Q99569 1192 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 LRRN3Q9H3W5 708 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 XKR8Q9H6D3 395 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 RDH14Q9HBH5 336 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 NMRAL1Q9HBL8 299 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 CIDEBQ9UHD4 219 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 OARD1Q9Y530 152 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 SPEGQ15772 3267 aa19.12■□□□□ 0.65
UPF3A-211ENST00000618700 DUX1O43812 170 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 OPA1O60313 960 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 TOP3BO95985 862 aaKnown RBP19.11■□□□□ 0.65
UPF3A-211ENST00000618700 PROS1P07225 676 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 TYRP1P17643 537 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 TFEBP19484 476 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 CSF2RBP32927 897 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 AP1S2P56377 157 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 OR4D1Q15615 310 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 NKAIN2Q5VXU1 208 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 CROCCP2Q86T23 111 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 ISCA2Q86U28 154 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 TRABD2AQ86V40 505 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 LCA5Q86VQ0 697 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 OR4E2Q8NGC2 313 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 WDR48Q8TAF3 677 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 MCOLN3Q8TDD5 553 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 IL17FQ96PD4 163 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 RAB11FIP5Q9BXF6 653 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 SRMSQ9H3Y6 488 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 OR6C2Q9NZP2 312 aa19.11■□□□□ 0.65
UPF3A-211ENST00000618700 APOBEC2Q9Y235 224 aaKnown RBP19.11■□□□□ 0.65
UPF3A-211ENST00000618700 DCDC2BA2VCK2 349 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 OR6C74A6NCV1 312 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 OR5K3A6NET4 321 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 SLC16A8O95907 504 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 CDK4P11802 303 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 CDKL1Q00532 357 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 E2F1Q01094 437 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 CFHR1Q03591 330 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ARHGAP19Q14CB8 494 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 ACAP2Q15057 778 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 CYP2A13Q16696 494 aa19.1■□□□□ 0.65
UPF3A-211ENST00000618700 CLPPQ16740 277 aaPredicted RBP19.1■□□□□ 0.65
UPF3A-211ENST00000618700 TSNAXIP1Q2TAA8 658 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms