RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 MTPNP58546 118 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ERVPABLB-1P60509 514 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 FRG1Q14331 258 aaKnown RBP14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SQLEQ14534 574 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SLC36A3Q495N2 470 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ATP13A5Q4VNC0 1218 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 DOK6Q6PKX4 331 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 KIAA2013Q8IYS2 634 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 MUS81Q96NY9 551 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 SLC28A3Q9HAS3 691 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 WDR70Q9NW82 654 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 ARL15Q9NXU5 204 aa14.17□□□□□ -0.14
SHROOM1-208ENST00000617339 PTGES3LE9PB15 166 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 KERAO60938 352 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 IGSF6O95976 241 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 HLA-EP13747 358 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 EPCAMP16422 314 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 IRS1P35568 1242 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 PPIGQ13427 754 aaKnown RBP eCLIP14.16□□□□□ -0.141e-6■■■□□ 16.6
SHROOM1-208ENST00000617339 PAGE2BQ5JRK9 111 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 DEPDC1Q5TB30 811 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 Q6ZVL8 140 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 LARP4Q71RC2 724 aaKnown RBP eCLIP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 PGBD3Q8N328 593 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 PCYOX1LQ8NBM8 494 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 OR4F6Q8NGB9 312 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 OR2T11Q8NH01 316 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF599Q96NL3 588 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 C9orf16Q9BUW7 83 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 INTS7Q9NVH2 962 aaKnown RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ITM2BQ9Y287 266 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 MAGED1Q9Y5V3 778 aaPredicted RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 LZTS3O60299 673 aaPredicted RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 PGLSO95336 258 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 B3GALT4O96024 378 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 CA3P07451 260 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 BMP2P12643 396 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 POLR2EP19388 210 aaKnown RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 CAPGP40121 348 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 DNAJB13P59910 316 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 RAB33AQ14088 237 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 PAGE3Q5JUK9 113 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ASTLQ6HA08 431 aaPredicted RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 C2orf15Q8WU43 125 aaKnown RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ZSWIM3Q96MP5 696 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 SLC25A23Q9BV35 468 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 MIR1-1HGQ9H1L0 117 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ATP13A3Q9H7F0 1226 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 EXD2Q9NVH0 621 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF701M0R085 212 aaPredicted RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 NME4O00746 187 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 CAPN15O75808 1086 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 ALBP02768 609 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 SERPINA4P29622 427 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 CASP9P55211 416 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 RAB15P59190 212 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 RPS3AP61247 264 aaKnown RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 CRTC3Q6UUV7 619 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 NKAPQ8N5F7 415 aaKnown RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 MEAF6Q9HAF1 191 aa14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 SMPD3Q9NY59 655 aaPredicted RBP14.16□□□□□ -0.14
SHROOM1-208ENST00000617339 SYCE1LA8MT33 242 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 WASH3PC4AMC7 463 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 CLDN25C9JDP6 229 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 SEC22BO75396 215 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 OGNP20774 298 aaKnown RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 TTKP33981 857 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 VIPR2P41587 438 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 HK2P52789 917 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 ABRAXAS2Q15018 415 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 MAPRE2Q15555 327 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 AP5B1Q2VPB7 878 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 FNDC3BQ53EP0 1204 aaKnown RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 TPGS2Q68CL5 300 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 ZFP90Q8TF47 636 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 PIH1D2Q8WWB5 315 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 ITPKCQ96DU7 683 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 THUMPD3Q9BV44 507 aaKnown RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 TFB2MQ9H5Q4 396 aaKnown RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 ACTR8Q9H981 624 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 PAK6Q9NQU5 681 aaPredicted RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 PTBP2Q9UKA9 531 aaKnown RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 PSME2Q9UL46 239 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 DOCK4Q8N1I0 1966 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 ZNF236Q9UL36 1845 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 RFXAPO00287 272 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 FFAR2O15552 330 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 TIMP1P01033 207 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 G6PDP11413 515 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 RPS9P46781 194 aaKnown RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 IL1RL1Q01638 556 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 NFATC2Q13469 925 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 NUMA1Q14980 2115 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 ATP6AP1LQ52LC2 224 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 SLCO6A1Q86UG4 719 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 CRIPAKQ8N1N5 446 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 LILRA3Q8N6C8 439 aaPredicted RBP14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 OR56A4Q8NGH8 313 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 NRBF2Q96F24 287 aa14.15□□□□□ -0.14
SHROOM1-208ENST00000617339 PRKAB1Q9Y478 270 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 171 ms