RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 LAMA1P25391 3075 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 SPTY2D1-AS1A0A0U1RR47 76 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 SDHDO14521 159 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 DCTN3O75935 186 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 OR4F21O95013 312 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 TDGF1P13385 188 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 EIF2B5Q13144 721 aaKnown RBP13.87□□□□□ -0.19
USP39-220ENST00000613444 CLCA4Q14CN2 919 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 RBBP7Q16576 425 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 LRRC56Q8IYG6 542 aaPredicted RBP13.87□□□□□ -0.19
USP39-220ENST00000613444 OR9A1PQ8NGU1 263 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 OR5K2Q8NHB8 316 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 CCL4L1Q8NHW4 92 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 C1orf216Q8TAB5 229 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 ATL1Q8WXF7 558 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 INSM2Q96T92 566 aaPredicted RBP13.87□□□□□ -0.19
USP39-220ENST00000613444 MENTQ9BUN1 341 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 NTMT1Q9BV86 223 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 TMEM168Q9H0V1 697 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 OSGEPL1Q9H4B0 414 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 INTS7Q9NVH2 962 aaKnown RBP13.87□□□□□ -0.19
USP39-220ENST00000613444 KLF15Q9UIH9 416 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 SLC22A14Q9Y267 594 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 CFAP20Q9Y6A4 193 aaKnown RBP13.87□□□□□ -0.19
USP39-220ENST00000613444 SPAG17Q6Q759 2223 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 SDK1Q7Z5N4 2213 aa13.87□□□□□ -0.19
USP39-220ENST00000613444 A0A1W2PR77 199 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 PABPN1LA6NDY0 278 aaKnown RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 PRAMEF4O60810 478 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 SKAP2O75563 359 aaPredicted RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 WDR47O94967 919 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 WNT1P04628 370 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 SLC35G4P0C7Q5 338 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 THEGLP0DJG4 465 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 EPB42P16452 691 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 EPHA3P29320 983 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 CTBSQ01459 385 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 RPL6Q02878 288 aaKnown RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 FZD2Q14332 565 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 SPRED3Q2MJR0 410 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 GALNTL6Q49A17 601 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 PRAMEF9Q5VWM5 478 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 TSSK4Q6SA08 328 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 RD3Q7Z3Z2 195 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 DCUN1D3Q8IWE4 304 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 OR4F6Q8NGB9 312 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 ERP27Q96DN0 273 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 PPP1R36Q96LQ0 422 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 NMUR2Q9GZQ4 415 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 PRDM8Q9NQV8 689 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 PRMT8Q9NR22 394 aaPredicted RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 APOBEC2Q9Y235 224 aaKnown RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 TIMM22Q9Y584 194 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 TRPC5OSA6NMA1 111 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 IFRD1O00458 451 aaPredicted RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 EML2O95834 649 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 OTCP00480 354 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 IDSP22304 550 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 AK4P27144 223 aaPredicted RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 LRP8Q14114 963 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 UAP1L1Q3KQV9 507 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 USP39Q53GS9 565 aaKnown RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 DUS1LQ6P1R4 473 aaKnown RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 CLNKQ7Z7G1 428 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 NRROSQ86YC3 692 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 PPFIBP2Q8ND30 876 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 FAM174AQ8TBP5 190 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 TWIST2Q8WVJ9 160 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 SPACA7Q96KW9 195 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 C3orf30Q96M34 536 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 RILPQ96NA2 401 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 OR4K3Q96R72 315 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 TCF7L2Q9NQB0 619 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 TRNAU1APQ9NX07 287 aaKnown RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 SCHIP1Q9P0W5 487 aaPredicted RBP13.86□□□□□ -0.19
USP39-220ENST00000613444 TBC1D29Q9UFV1 150 aa13.86□□□□□ -0.19
USP39-220ENST00000613444 TNRC6BQ9UPQ9 1833 aaKnown RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 CCDC163A0A0D9SF12 145 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 GOLGA8QA0A0J9YX86 632 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 GOLGA8OA6NCC3 632 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 GOLGA8NF8WBI6 632 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 FCHO1O14526 889 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 SERPINA6P08185 405 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 UROSP10746 265 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 ERGP11308 486 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 ITPKAP23677 461 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 MAOBP27338 520 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 PIK3CGP48736 1102 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 CCNG1P51959 295 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 NAE1Q13564 534 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 PTK2BQ14289 1009 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 LSM12Q3MHD2 195 aaKnown RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 WASH2PQ6VEQ5 465 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 SLC36A4Q6YBV0 504 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 YTHDF3Q7Z739 585 aaKnown RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 TBC1D21Q8IYX1 336 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 AFAP1L2Q8N4X5 818 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 CDYL2Q8N8U2 506 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 LMNTD1Q8N9Z9 388 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 MFSD2AQ8NA29 543 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms