RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 COPEO14579 308 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 TYROBPO43914 113 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 MT-CO3P00414 261 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 GSTA1P08263 222 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 LTA4HP09960 611 aaKnown RBP14.59□□□□□ -0.07
TRIM28-207ENST00000597136 CBSLP0DN79 551 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 CBSP35520 551 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 GPR3P46089 330 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 RGS4P49798 205 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 ABRQ12979 859 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 RPA4Q13156 261 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 CSHL1Q14406 222 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 FAM83EQ2M2I3 478 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 SYTL3Q4VX76 610 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 ZNF574Q6ZN55 896 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-207ENST00000597136 CDHR3Q6ZTQ4 885 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 TMPRSS7Q7RTY8 843 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 ERMP1Q7Z2K6 904 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 LCA5Q86VQ0 697 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 TMEM159Q96B96 161 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 NXNL1Q96CM4 212 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 LINGO1Q96FE5 620 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 GPR78Q96P69 363 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 FERD3LQ96RJ6 166 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 NUDT22Q9BRQ3 303 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 DERL2Q9GZP9 239 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 ZNF358Q9NW07 568 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 CCDC88CQ9P219 2028 aa14.59□□□□□ -0.07
TRIM28-207ENST00000597136 TSR3Q9UJK0 312 aaKnown RBP14.59□□□□□ -0.07
TRIM28-207ENST00000597136 RUVBL2Q9Y230 463 aaKnown RBP14.59□□□□□ -0.07
TRIM28-207ENST00000597136 FREM2Q5SZK8 3169 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 DMXL2Q8TDJ6 3036 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 AGRPO00253 132 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 PRPF4O43172 522 aaKnown RBP eCLIP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 ENO3P13929 434 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 HOXB3P14651 431 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 TYRP1P17643 537 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 HPDP32754 393 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 MAPK9P45984 424 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 PLOD1Q02809 727 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 TARDBPQ13148 414 aaKnown RBP eCLIP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 PRKG2Q13237 762 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 B3GNT8Q7Z7M8 397 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 PDZD3Q86UT5 571 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 SLC22A15Q8IZD6 547 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 OR5AR1Q8NGP9 310 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 TFGQ92734 400 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 GFM1Q96RP9 751 aaKnown RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 UNKQ9C0B0 810 aaKnown RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 KCNK9Q9NPC2 374 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 POT1Q9NUX5 634 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 OGFRQ9NZT2 677 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 TMEM9Q9P0T7 183 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 ACACBO00763 2458 aa14.58□□□□□ -0.08
TRIM28-207ENST00000597136 MAP1BP46821 2468 aaKnown RBP14.58□□□□□ -0.08
TRIM28-207ENST00000597136 APC2O95996 2303 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 GLRA3O75311 464 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 TPBGLP0DKB5 382 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 CDK4P11802 303 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 JUPP14923 745 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 CD1DP15813 335 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 MPSTP25325 297 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 CSF2RBP32927 897 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 RPA3P35244 121 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-207ENST00000597136 PDX1P52945 283 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 SPIDRQ14159 915 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 MPP2Q14168 576 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 TSNAXIP1Q2TAA8 658 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 CYHR1Q6ZMK1 362 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 NEK10Q6ZWH5 1172 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 PIWIL4Q7Z3Z4 852 aaKnown RBP14.57□□□□□ -0.08
TRIM28-207ENST00000597136 TMPRSS12Q86WS5 348 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 CFAP61Q8NHU2 1237 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 SH3KBP1Q96B97 665 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 TSNARE1Q96NA8 513 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 C12orf65Q9H3J6 166 aaKnown RBP14.57□□□□□ -0.08
TRIM28-207ENST00000597136 SEMA6CQ9H3T2 930 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 NMRAL1Q9HBL8 299 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 FAM53CQ9NYF3 392 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 GRID1Q9ULK0 1009 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 CLCA2Q9UQC9 943 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 PLLPQ9Y342 182 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 AHCTF1Q8WYP5 2266 aa14.57□□□□□ -0.08
TRIM28-207ENST00000597136 TMEM120BA0PK00 339 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 IFRD1O00458 451 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-207ENST00000597136 ZBTB14O43829 449 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 GLRBP48167 497 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 ATP6V0D1P61421 351 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 ACAP2Q15057 778 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 LRRC8EQ6NSJ5 796 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 KLC3Q6P597 504 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 MYO1HQ8N1T3 1032 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 DCBLD1Q8N8Z6 715 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 NCSTNQ92542 709 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-207ENST00000597136 STN1Q9H668 368 aaKnown RBP14.56□□□□□ -0.08
TRIM28-207ENST00000597136 UCK1Q9HA47 277 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 TMEM216Q9P0N5 145 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 CIDEBQ9UHD4 219 aa14.56□□□□□ -0.08
TRIM28-207ENST00000597136 IKZF3Q9UKT9 509 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms