RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RPS27LQ71UM5 84 aaKnown RBP14.25□□□□□ -0.13
VRK3-212ENST00000596814 GKN2Q86XP6 184 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 ZNF548Q8NEK5 533 aaPredicted RBP14.25□□□□□ -0.13
VRK3-212ENST00000596814 ZNF483Q8TF39 744 aaPredicted RBP14.25□□□□□ -0.13
VRK3-212ENST00000596814 C7orf26Q96N11 449 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 TRMOQ9BU70 441 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 CD244Q9BZW8 370 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 C20orf27Q9GZN8 174 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 NSRP1Q9H0G5 558 aaKnown RBP14.25□□□□□ -0.13
VRK3-212ENST00000596814 ZNF395Q9H8N7 513 aaPredicted RBP14.25□□□□□ -0.13
VRK3-212ENST00000596814 OPTCQ9UBM4 332 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 E2F3O00716 465 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 AQP9O43315 295 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CCNT2O60583 730 aaKnown RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 STK16O75716 305 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 PIAS2O75928 621 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CHRNGP07510 517 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 SLC2A4P14672 509 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 NDUFS1P28331 727 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 GGT5P36269 586 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CCR10P46092 362 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 SLC6A12P48065 614 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 BNC1Q01954 994 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 LPAL2Q16609 132 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 DUOXA1Q1HG43 343 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 ARL13AQ5H913 290 aaPredicted RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 PRAMEF14Q5SWL7 426 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 AGTRAPQ6RW13 159 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 LRRC70Q7Z2Q7 622 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CEP76Q8TAP6 659 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CXorf40BQ96DE9 158 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 NSUN5Q96P11 429 aaKnown RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 SORT1Q99523 831 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 PITPNM3Q9BZ71 974 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 PSD3Q9NYI0 1048 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 SPATA7Q9P0W8 599 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 POLG2Q9UHN1 485 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 PLAGL1Q9UM63 463 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 DOLKQ9UPQ8 538 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 COLEC10Q9Y6Z7 277 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 USP34Q70CQ2 3546 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 OR5K4A6NMS3 321 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 K7EPI3 171 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 SDC3O75056 442 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 SNUPNO95149 360 aaKnown RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 CFIP05156 583 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 GDF5P43026 501 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CDH13P55290 713 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CLCQ05315 142 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 GRB7Q14451 532 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 PTCHD3Q3KNS1 767 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 IYDQ6PHW0 289 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 ZC3H14Q6PJT7 736 aaKnown RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 ATG14Q6ZNE5 492 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 CRLF3Q8IUI8 442 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 SDR16C5Q8N3Y7 309 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 RAB42Q8N4Z0 105 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 FAM46DQ8NEK8 389 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 ZNF480Q8WV37 535 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 ELF4Q99607 663 aaPredicted RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 FAM107BQ9H098 131 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 ATG10Q9H0Y0 220 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 EML4Q9HC35 981 aaKnown RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 ZNF624Q9P2J8 865 aaPredicted RBP14.24□□□□□ -0.13
VRK3-212ENST00000596814 ANGPTL3Q9Y5C1 460 aa14.24□□□□□ -0.13
VRK3-212ENST00000596814 KIR2DS5A0A0G2JLQ3 304 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 A0A0G2JNG1 304 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 KIR2DS3K7RE56 304 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 KDM1AO60341 852 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 WDR47O94967 919 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 MLYCDO95822 493 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 ERGP11308 486 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 TSPAN8P19075 237 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 DRD4P21917 467 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 SLC19A1P41440 591 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 PIK3CGP48736 1102 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 ARRB1P49407 418 aaPredicted RBP14.23□□□□□ -0.13
VRK3-212ENST00000596814 PNLIPRP1P54315 467 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 GALNT1Q10472 559 aaPredicted RBP14.23□□□□□ -0.13
VRK3-212ENST00000596814 GRIK2Q13002 908 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 LCP2Q13094 533 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 GTF2H2Q13888 395 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 KIR2DS5Q14953 304 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 ARHGAP19Q14CB8 494 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 ZXDCQ2QGD7 858 aaPredicted RBP14.23□□□□□ -0.13
VRK3-212ENST00000596814 GTF2H2CQ6P1K8 395 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 GOLGA7Q7Z5G4 137 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 TRIM48Q8IWZ4 208 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 SYTL1Q8IYJ3 562 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 LSMEM2Q8N112 164 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 TEX9Q8N6V9 391 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 PPFIBP2Q8ND30 876 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 OR56A3Q8NH54 315 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 TRPC4APQ8TEL6 797 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 ZDHHC1Q8WTX9 485 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 PYCR2Q96C36 320 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 MED8Q96G25 268 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 CAMK1GQ96NX5 476 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 IL17FQ96PD4 163 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 SLC32A1Q9H598 525 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms