RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SERBP1Q8NC51 408 aaKnown RBP eCLIP23.1■■□□□ 1.29
SHMT1-206ENST00000579558 CALML6Q8TD86 181 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 STARD8Q92502 1023 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 FOPNLQ96NB1 174 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 ARHGAP9Q9BRR9 750 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 FBXO6Q9NRD1 293 aaPredicted RBP23.1■■□□□ 1.29
SHMT1-206ENST00000579558 TSR3Q9UJK0 312 aaKnown RBP23.1■■□□□ 1.29
SHMT1-206ENST00000579558 NFS1Q9Y697 457 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 FAM169AQ9Y6X4 670 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 A0A0J9YY10 115 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 E5RI56 91 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 CCDC188H7C350 402 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 FANCGO15287 622 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 CPNE3O75131 537 aaKnown RBP23.09■■□□□ 1.29
SHMT1-206ENST00000579558 PRKAR1AP10644 381 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 PGAM1P18669 254 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 F8A1P23610 371 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 IVDP26440 423 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 PEBP1P30086 187 aaKnown RBP23.09■■□□□ 1.29
SHMT1-206ENST00000579558 SLC1A2P43004 574 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 BDKRB1P46663 353 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 DHX9Q08211 1270 aaKnown RBP23.09■■□□□ 1.29
SHMT1-206ENST00000579558 KIR2DS3Q14952 304 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 TBR1Q16650 682 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 LINC00303Q3SY05 128 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 LMNTD2Q8IXW0 634 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 FLVCR1-AS1Q8TAF5 88 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 IL17FQ96PD4 163 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 TWSG1Q9GZX9 223 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 LHX9Q9NQ69 397 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 RNF14Q9UBS8 474 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 SLC39A10Q9ULF5 831 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 RUVBL2Q9Y230 463 aaKnown RBP23.09■■□□□ 1.29
SHMT1-206ENST00000579558 MRFAP1Q9Y605 127 aa23.09■■□□□ 1.29
SHMT1-206ENST00000579558 MRPS18BQ9Y676 258 aaKnown RBP23.09■■□□□ 1.29
SHMT1-206ENST00000579558 NKX2-8O15522 239 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 BANF1O75531 89 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 MSL3P1P0C860 447 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 ATP5DP30049 168 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 MC1RQ01726 317 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 GRB7Q14451 532 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 GBX1Q14549 363 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 SLC5A12Q1EHB4 618 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 CNSTQ6PJW8 725 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 CDHR3Q6ZTQ4 885 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 C2orf73Q8N5S3 287 aaPredicted RBP23.08■■□□□ 1.29
SHMT1-206ENST00000579558 ZBTB2Q8N680 514 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 LINC01555Q8NAE3 123 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 OR1L3Q8NH93 324 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 CT55Q8WUE5 264 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 TRIM51Q9BSJ1 452 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 FAM167BQ9BTA0 163 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 MENTQ9BUN1 341 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 CCDC68Q9H2F9 335 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 GALPQ9UBC7 116 aa23.08■■□□□ 1.29
SHMT1-206ENST00000579558 RASGRF2O14827 1237 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 TTI1O43156 1089 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 KATNA1O75449 491 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 C1QL1O75973 258 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 C1orf105O95561 183 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 TCN2P20062 427 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 CD9P21926 228 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 CDC20Q12834 499 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 CRYMQ14894 314 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 MORF4L2Q15014 288 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 BBS9Q3SYG4 887 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 MSS51Q4VC12 460 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 HSP90AA5PQ58FG0 334 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 PRAMEF17Q5VTA0 474 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 TAX1BP1Q86VP1 789 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 KCNMB4Q86W47 210 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 LMNTD1Q8N9Z9 388 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 OR2L8Q8NGY9 312 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 N4BP2L2Q92802 583 aaPredicted RBP23.07■■□□□ 1.28
SHMT1-206ENST00000579558 RAD51AP1Q96B01 352 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 TCTN2Q96GX1 697 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 CATSPER2Q96P56 530 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 EBNA1BP2Q99848 306 aaKnown RBP23.07■■□□□ 1.28
SHMT1-206ENST00000579558 RAB11FIP5Q9BXF6 653 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 SEMA4CQ9C0C4 833 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 IARS2Q9NSE4 1012 aaKnown RBP23.07■■□□□ 1.28
SHMT1-206ENST00000579558 SERTAD3Q9UJW9 196 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 KCND3Q9UK17 655 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 FBXO5Q9UKT4 447 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 PCDHB3Q9Y5E6 796 aa23.07■■□□□ 1.28
SHMT1-206ENST00000579558 TERTO14746 1132 aaKnown RBP23.06■■□□□ 1.28
SHMT1-206ENST00000579558 TTC4O95801 387 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 CYP2A7P20853 494 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 CCNFP41002 786 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 ITGA1P56199 1179 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 DNASE1L3Q13609 305 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 ZIC1Q15915 447 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 ACSBG2Q5FVE4 666 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 C16orf46Q6P387 395 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 C17orf53Q8N3J3 647 aaPredicted RBP23.06■■□□□ 1.28
SHMT1-206ENST00000579558 RAB42Q8N4Z0 105 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 SLC22A18Q96BI1 424 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 MED8Q96G25 268 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 NAT9Q9BTE0 207 aa23.06■■□□□ 1.28
SHMT1-206ENST00000579558 FAM60AQ9NP50 221 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms