RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CLTBP09497 229 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 BCKDHAP12694 445 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 RPL10P27635 214 aaKnown RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 CAPGP40121 348 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 CDH15P55291 814 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 CYP4F3Q08477 520 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 HSPA14Q0VDF9 509 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 GGTA1PQ4G0N0 100 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 FAM98BQ52LJ0 330 aaKnown RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 TBPL2Q6SJ96 375 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ZNF786Q8N393 782 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 TCAIMQ8N3R3 496 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 DHRSXQ8N5I4 330 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 CHST14Q8NCH0 376 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 KREMEN2Q8NCW0 462 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 MAGEE2Q8TD90 523 aaPredicted RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 CYGBQ8WWM9 190 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ASB11Q8WXH4 323 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 TMIGD2Q96BF3 282 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 MTFMTQ96DP5 389 aaKnown RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 FBXL20Q96IG2 436 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 SH3GL1Q99961 368 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ACPTQ9BZG2 426 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 IKZF5Q9H5V7 419 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ASAH2Q9NR71 780 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 SLC25A37Q9NYZ2 338 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 FADS3Q9Y5Q0 445 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 KCNE1BA0A087WTH5 132 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 A0A087WXM4 84 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 AREL1O15033 823 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 GMNNO75496 209 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 CXCL14O95715 111 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 PDYNP01213 254 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 MPC1LP0DKB6 136 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 CSF2RAP15509 400 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 NFKBIAP25963 317 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ITGB8P26012 769 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 CCR2P41597 374 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 SLC6A12P48065 614 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 HNMTP50135 292 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ADARB1P78563 741 aaKnown RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 RUNDC3AQ59EK9 446 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 LRRC73Q5JTD7 316 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 PATL1Q86TB9 770 aaKnown RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 IQCF2Q8IXL9 164 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 LEMD2Q8NC56 503 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ZNF548Q8NEK5 533 aaPredicted RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 OR10A6Q8NH74 314 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 ADAMTS16Q8TE57 1224 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 SLC22A17Q8WUG5 538 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 OR52E6Q96RD3 313 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 THUMPD3Q9BV44 507 aaKnown RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 EMILIN2Q9BXX0 1053 aa9.84□□□□□ -0.83
VPS53-220ENST00000576149 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.84□□□□□ -0.83
VPS53-220ENST00000576149 PLXNB3Q9ULL4 1909 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 TRBV5-3A0A0A0MS03 114 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 WASH3PC4AMC7 463 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 GFYI3L273 518 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 CCL16O15467 120 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 EFCAB14O75071 495 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 DEAF1O75398 565 aaPredicted RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 SNAP29O95721 258 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 CLIC3O95833 236 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 ADH1AP07327 375 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 HIST1H2AGP0C0S8 130 aaPredicted RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 PABPC1P11940 636 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 ATP1B2P14415 290 aaPredicted RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 HIST1H2ADP20671 130 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SLC5A2P31639 672 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 TRPC1P48995 793 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 RPS14P62263 151 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 POLR2LP62875 67 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 CHRNB3Q05901 458 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 PLEKHS1Q5SXH7 462 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 ABRAXAS1Q6UWZ7 409 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 GDPD4Q6W3E5 623 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 Q6ZVU0 165 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 USP51Q70EK9 711 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 DET1Q7L5Y6 550 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 VRK3Q8IV63 474 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 OR52E4Q8NGH9 312 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 DNAJB8Q8NHS0 232 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 CLHC1Q8NHS4 586 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SELENOMQ8WWX9 145 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 FIG4Q92562 907 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 HIST1H2AHQ96KK5 128 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 HIST1H2AJQ99878 128 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 H2AFJQ9BTM1 129 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 UGT2B28Q9BY64 529 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 CRISPLD2Q9H0B8 497 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 SAGE1Q9NXZ1 904 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 PKD2L2Q9NZM6 624 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 RSL24D1Q9UHA3 163 aaKnown RBP9.83□□□□□ -0.84
VPS53-220ENST00000576149 CD84Q9UIB8 345 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 AP3M1Q9Y2T2 418 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 PCDHGA11Q9Y5H2 935 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 PIKFYVEQ9Y2I7 2098 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 ELOVL7A1L3X0 281 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 NEDD8-MDP1E9PL57 170 aa9.83□□□□□ -0.84
VPS53-220ENST00000576149 GSTA4O15217 222 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms