RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PADI2Q9Y2J8 665 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 PCSK5Q92824 1860 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 SNRNP200O75643 2136 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 NAV2Q8IVL1 2488 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 A6NL46 340 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 ISM1B1AKI9 464 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 SORBS2O94875 1100 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 CTSBP07858 339 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 PEBP1P30086 187 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 PPARGP37231 505 aaPredicted RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 CSE1LP55060 971 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 DCDP81605 110 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 HSPA14Q0VDF9 509 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 ATP1A4Q13733 1029 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 SEMA3AQ14563 771 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 SSPNQ14714 243 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 SLC5A12Q1EHB4 618 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 DNAJC21Q5F1R6 531 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 MLIPQ5VWP3 458 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 RAB43Q86YS6 212 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 SLC13A5Q86YT5 568 aaPredicted RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 VRK3Q8IV63 474 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 DNAJC22Q8N4W6 341 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 EFCAB3Q8N7B9 438 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 PROKR1Q8TCW9 393 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 UBE2Q2Q8WVN8 375 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 PEX13Q92968 403 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 GBP5Q96PP8 586 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 CARD6Q9BX69 1037 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 G3BP2Q9UN86 482 aaKnown RBP15.5■□□□□ 0.07
CLN3-229ENST00000567963 TCAF1Q9Y4C2 921 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 MAP4K5Q9Y4K4 846 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 LRRK2Q5S007 2527 aa15.5■□□□□ 0.07
CLN3-229ENST00000567963 IQCF5A8MTL0 148 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 ZSCAN9O15535 394 aaPredicted RBP15.49■□□□□ 0.07
CLN3-229ENST00000567963 DPM1O60762 260 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 GPC4O75487 556 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 APRTP07741 180 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 CD63P08962 238 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 UQCRFS1P47985 274 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 RAB28P51157 221 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 PRAMEP78395 509 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 SNX1Q13596 522 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 KYNUQ16719 465 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 C1orf189Q5VU69 101 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 JMJD6Q6NYC1 403 aaPredicted RBP15.49■□□□□ 0.07
CLN3-229ENST00000567963 TLDC1Q6P9B6 456 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 HPS6Q86YV9 775 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 ZNF655Q8N720 491 aaPredicted RBP15.49■□□□□ 0.07
CLN3-229ENST00000567963 SPC24Q8NBT2 197 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 GALNT11Q8NCW6 608 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 ASZ1Q8WWH4 475 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 IP6K3Q96PC2 410 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 PSMG3-AS1Q96PY0 264 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 SMAD5Q99717 465 aaKnown RBP15.49■□□□□ 0.07
CLN3-229ENST00000567963 MENTQ9BUN1 341 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 TSSK1BQ9BXA7 367 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 GPR83Q9NYM4 423 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 PAK5Q9P286 719 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 DHCR7Q9UBM7 475 aaKnown RBP15.49■□□□□ 0.07
CLN3-229ENST00000567963 ANAPC5Q9UJX4 755 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 GUCA1BQ9UMX6 200 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 PLCL2Q9UPR0 1127 aa15.49■□□□□ 0.07
CLN3-229ENST00000567963 PRRC2CQ9Y520 2896 aaKnown RBP15.49■□□□□ 0.07
CLN3-229ENST00000567963 CDC25BP30305 580 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 PKLRP30613 574 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 OTX2P32243 289 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 FAM20CQ8IXL6 584 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 CCDC89Q8N998 374 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 LINC01555Q8NAE3 123 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 TSGA10Q9BZW7 698 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 CHRAC1Q9NRG0 131 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 IFT80Q9P2H3 777 aaPredicted RBP15.48■□□□□ 0.07
CLN3-229ENST00000567963 GPN3Q9UHW5 284 aaPredicted RBP15.48■□□□□ 0.07
CLN3-229ENST00000567963 SRPK3Q9UPE1 567 aa15.48■□□□□ 0.07
CLN3-229ENST00000567963 PTRH2Q9Y3E5 179 aaKnown RBP15.48■□□□□ 0.07
CLN3-229ENST00000567963 NBPF19A0A087WUL8 3843 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 KRT86O43790 486 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 SLCO2B1O94956 709 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 RPN2P04844 631 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 APOA4P06727 396 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 GP1BBP13224 206 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 MAGP20916 626 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 CD9P21926 228 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 GNLYP22749 145 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 AOAHP28039 575 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 GRB7Q14451 532 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 PCID2Q5JVF3 399 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 MRPL14Q6P1L8 145 aaKnown RBP15.47■□□□□ 0.07
CLN3-229ENST00000567963 MRGPREQ86SM8 312 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 LDB1Q86U70 411 aaPredicted RBP15.47■□□□□ 0.07
CLN3-229ENST00000567963 RBMXL3Q8N7X1 1067 aaKnown RBP15.47■□□□□ 0.07
CLN3-229ENST00000567963 Q8NA96 180 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 PPHLN1Q8NEY8 458 aaKnown RBP15.47■□□□□ 0.07
CLN3-229ENST00000567963 CFAP61Q8NHU2 1237 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 LKAAEAR1Q8TD35 194 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 SLC22A18Q96BI1 424 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 CATSPERZQ9NTU4 200 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 TXLNGQ9NUQ3 528 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 IRAK4Q9NWZ3 460 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms