RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MATN2O00339 956 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 NRP2O60462 931 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 CNOT3O75175 753 aaKnown RBP17.11■□□□□ 0.33
HDDC3-205ENST00000559898 CYP2A7P20853 494 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 SHMT2P34897 504 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 BDKRB1P46663 353 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 ITGA1P56199 1179 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 SLC9A5Q14940 896 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 IZUMO3Q5VZ72 239 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 AGGF1Q8N302 714 aaeCLIP17.11■□□□□ 0.33
HDDC3-205ENST00000559898 DTWD1Q8N5C7 304 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 OR8K5Q8NH50 307 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 CPT1BQ92523 772 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 SGSM3Q96HU1 749 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 LRFN5Q96NI6 719 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 CARD6Q9BX69 1037 aa17.11■□□□□ 0.33
HDDC3-205ENST00000559898 A0A0J9YY10 115 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 QSOX1O00391 747 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 RFPL1O75677 317 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 TMEM63AO94886 807 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 VAPBO95292 243 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 MSL3P1P0C860 447 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 CSRP3P50461 194 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 RPS15P62841 145 aaKnown RBP17.1■□□□□ 0.33
HDDC3-205ENST00000559898 YBX1P67809 324 aaKnown RBP17.1■□□□□ 0.33
HDDC3-205ENST00000559898 KCNJ11Q14654 390 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 KYNUQ16719 465 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 NLRP9Q7RTR0 991 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 SYVN1Q86TM6 617 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 CAND1Q86VP6 1230 aaKnown RBP17.1■□□□□ 0.33
HDDC3-205ENST00000559898 DNAJC22Q8N4W6 341 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 BIRC8Q96P09 236 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 GPR87Q9BY21 358 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 FANCEQ9HB96 536 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 DHCR7Q9UBM7 475 aaKnown RBP17.1■□□□□ 0.33
HDDC3-205ENST00000559898 TCFL5Q9UL49 500 aa17.1■□□□□ 0.33
HDDC3-205ENST00000559898 E7EQ34 232 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 PRMT5O14744 637 aaPredicted RBP17.09■□□□□ 0.33
HDDC3-205ENST00000559898 NIPSNAP2O75323 286 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 KLK3P07288 261 aaPredicted RBP17.09■□□□□ 0.33
HDDC3-205ENST00000559898 TPSB2P20231 275 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 MAGP20916 626 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 PSMB5P28074 263 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 FMO4P31512 558 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 CASRP41180 1078 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 GRIA3P42263 894 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 NPY2RP49146 381 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 EIF3BP55884 814 aaKnown RBP17.09■□□□□ 0.33
HDDC3-205ENST00000559898 TPSAB1Q15661 275 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 PTRHD1Q6GMV3 140 aaKnown RBP17.09■□□□□ 0.33
HDDC3-205ENST00000559898 LRRC8BQ6P9F7 803 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 ZBTB2Q8N680 514 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 ZNF655Q8N720 491 aaPredicted RBP17.09■□□□□ 0.33
HDDC3-205ENST00000559898 TRIM58Q8NG06 486 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 KIFC1Q9BW19 673 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 POLG2Q9UHN1 485 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 SERTAD3Q9UJW9 196 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 PLAAQ9Y263 795 aa17.09■□□□□ 0.33
HDDC3-205ENST00000559898 SLCO2B1O94956 709 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 ITGAXP20702 1163 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 CCL11P51671 97 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 MLLT10P55197 1068 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 GPS1Q13098 491 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 DNAJC21Q5F1R6 531 aaKnown RBP17.08■□□□□ 0.32
HDDC3-205ENST00000559898 FCRL6Q6DN72 434 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 TCTN3Q6NUS6 607 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 ASB18Q6ZVZ8 466 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 APLFQ8IW19 511 aaPredicted RBP17.08■□□□□ 0.32
HDDC3-205ENST00000559898 REXO1L1PQ8IX06 675 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 DENND1AQ8TEH3 1009 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 LPGAT1Q92604 370 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 SLC30A3Q99726 388 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 NLNQ9BYT8 704 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 IL22Q9GZX6 179 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 OR6C2Q9NZP2 312 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 BFARQ9NZS9 450 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 ANAPC5Q9UJX4 755 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 SOX13Q9UN79 622 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 SNX7Q9UNH6 387 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 ZKSCAN5Q9Y2L8 839 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 NEU2Q9Y3R4 380 aa17.08■□□□□ 0.32
HDDC3-205ENST00000559898 COL12A1Q99715 3063 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 FLNBO75369 2602 aaKnown RBP17.07■□□□□ 0.32
HDDC3-205ENST00000559898 MKRN2OSH3BPM6 223 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 GOLGA8MH3BSY2 632 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 PRICKLE3O43900 615 aaPredicted RBP17.07■□□□□ 0.32
HDDC3-205ENST00000559898 KLF7O75840 302 aaPredicted RBP17.07■□□□□ 0.32
HDDC3-205ENST00000559898 OR2B3O76000 313 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 RECKO95980 971 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 KRT14P02533 472 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 RAB40ALP0C0E4 278 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 MCM3P25205 808 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 RAB28P51157 221 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 ATP1A4Q13733 1029 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 SLC5A12Q1EHB4 618 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 CENPUQ71F23 418 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 RASGEF1CQ8N431 466 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 OTUD6BQ8N6M0 293 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 COG1Q8WTW3 980 aa17.07■□□□□ 0.32
HDDC3-205ENST00000559898 ASZ1Q8WWH4 475 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms