RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 POLR3CQ9BUI4 534 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 MLPHQ9BV36 600 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 UTP14AQ9BVJ6 771 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 GTPBP2Q9BX10 602 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 VN1R1Q9GZP7 353 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 DNAI2Q9GZS0 605 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 S1PR5Q9H228 398 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MINDY3Q9H8M7 445 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LMAN1LQ9HAT1 526 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 A4GALTQ9NPC4 353 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ARGLU1Q9NWB6 273 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 HIF1ANQ9NWT6 349 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 P4HTMQ9NXG6 502 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SMARCAL1Q9NZC9 954 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CNIH4Q9P003 139 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 B3GAT1Q9P2W7 334 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MTRRQ9UBK8 725 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LRWD1Q9UFC0 647 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 DAPK2Q9UIK4 370 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 WDR83OSQ9Y284 106 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 DLGAP4Q9Y2H0 992 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GRIP1Q9Y3R0 1128 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 HBS1LQ9Y450 684 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 YIPF1Q9Y548 306 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PCDHGA1Q9Y5H4 931 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PCDHAC2Q9Y5I4 1007 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 RPGRIP1LQ68CZ1 1315 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 A0A0G2JNG1 304 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 MAGEA13PA6NCF6 341 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 DUXAA6NLW8 204 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 E9PI62 339 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 H0YIG0 161 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 GAPDHSO14556 408 aaPredicted RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 PSMA7O14818 248 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 PPIP5K2O43314 1243 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 SLC28A2O43868 658 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 PRAF2O60831 178 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 KINO60870 393 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 FCGR3BO75015 233 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 PPP1R3DO95685 299 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 LDLRP01130 860 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 RLN1P04808 185 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 TFAP2AP05549 437 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 H1F0P07305 194 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 VIMP08670 466 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 HMOX1P09601 288 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 ANKRD34CP0C6C1 535 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 PLA2G4BP0C869 781 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 HSPA8P11142 646 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 FCGR1AP12314 374 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 EEF2P13639 858 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 ATP6V1B1P15313 513 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 CSF2RAP15509 400 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 NR1D1P20393 614 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 CASTP20810 708 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 SCP2P22307 547 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 DGKAP23743 735 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 ACAT1P24752 427 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 TIA1P31483 386 aaKnown RBP eCLIP1.54□□□□□ -2.16
USP3-209ENST00000558925 AHRP35869 848 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 KRT2P35908 639 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 USP8P40818 1118 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 MNDAP41218 407 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 SLC9A3P48764 834 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 NAGLUP54802 743 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 MTCP1P56278 107 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 NME5P56597 212 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 TUBA1BP68363 451 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 CX3CL1P78423 397 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 RPL24P83731 157 aaKnown RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 FOLH1Q04609 750 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 PRKCZQ05513 592 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 ACTN3Q08043 901 aaPredicted RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 DSC1Q08554 894 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 KIF5AQ12840 1032 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 MFAP5Q13361 173 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 SNTA1Q13424 505 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 TNK1Q13470 666 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 CUL3Q13618 768 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 VEZF1Q14119 521 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 KIR2DS5Q14953 304 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 UGT3A2Q3SY77 523 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 MCMDC2Q4G0Z9 681 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 SLC39A12Q504Y0 691 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 MDH1BQ5I0G3 518 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 LRRC73Q5JTD7 316 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 SIRPB2Q5JXA9 342 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 GLRA4Q5JXX5 417 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 ELFN2Q5R3F8 820 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 TXNRD3NBQ6F5E7 133 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 FAM109BQ6ICB4 259 aaPredicted RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 KIAA1161Q6NSJ0 714 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 SLC27A1Q6PCB7 646 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 CORO6Q6QEF8 472 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 TMEM270Q6UE05 265 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 ENPP7Q6UWV6 458 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 BTNL8Q6UX41 500 aa1.54□□□□□ -2.16
USP3-209ENST00000558925 ZNF704Q6ZNC4 412 aaPredicted RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 C11orf57Q6ZUT1 292 aaPredicted RBP1.54□□□□□ -2.16
USP3-209ENST00000558925 CREB3L2Q70SY1 520 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms