RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 C8orf59Q8N0T1 100 aaPredicted RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 CRIPAKQ8N1N5 446 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 ZBTB18Q99592 522 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 CLMPQ9H6B4 373 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 GORASP2Q9H8Y8 452 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 ZNF334Q9HCZ1 680 aaPredicted RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 SERHLQ9NQF3 203 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 MTRRQ9UBK8 725 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 WARS2Q9UGM6 360 aaKnown RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 CD84Q9UIB8 345 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 GNPTGQ9UJJ9 305 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 PPT2Q9UMR5 302 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 YIPF1Q9Y548 306 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 BOLA2-SMG1P6H3BVE0 249 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 K7EPI3 171 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 GREM1O60565 184 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 PRAMEF4O60810 478 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 ZNF821O75541 412 aaPredicted RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 CREG1O75629 220 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 INMTO95050 263 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 HNRNPCP07910 306 aaKnown RBP eCLIP12.59□□□□□ -0.391e-7■■■□□ 17.1
LDLR-207ENST00000558013 EPB42P16452 691 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 GJA1P17302 382 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 DGKAP23743 735 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 DCTP40126 519 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 RGS4P49798 205 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 B4GALNT1Q00973 533 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 SREBF2Q12772 1141 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 USP39Q53GS9 565 aaKnown RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 INO80DQ53TQ3 878 aaPredicted RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 C6orf141Q5SZD1 244 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 PRAMEF9Q5VWM5 478 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 LHX8Q68G74 356 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 CES5AQ6NT32 575 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 DNAJB7Q7Z6W7 309 aaPredicted RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 CDK5RAP1Q96SZ6 601 aaKnown RBP12.59□□□□□ -0.39
LDLR-207ENST00000558013 CCDC90BQ9GZT6 254 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 ARL15Q9NXU5 204 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 DNAJB9Q9UBS3 223 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 THSD7BQ9C0I4 1608 aa12.58□□□□□ -0.39
LDLR-207ENST00000558013 ZNF701M0R085 212 aaPredicted RBP12.58□□□□□ -0.4
LDLR-207ENST00000558013 STK16O75716 305 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 SEC14L2O76054 403 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 INHBBP09529 407 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 ITGALP20701 1170 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 CCR7P32248 378 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 BCL2L1Q07817 233 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 AQP6Q13520 282 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 SPCS2Q15005 226 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 CERS6Q6ZMG9 384 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 SLC15A4Q8N697 577 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 ZNF461Q8TAF7 563 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 ZNF420Q8TAQ5 688 aaPredicted RBP12.58□□□□□ -0.4
LDLR-207ENST00000558013 SDCCAG3Q96C92 435 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 EBPLQ9BY08 206 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 UGT2B28Q9BY64 529 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 SMG9Q9H0W8 520 aaKnown RBP12.58□□□□□ -0.4
LDLR-207ENST00000558013 CPQQ9Y646 472 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 CCNA2P20248 432 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 EPHA2P29317 976 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 CD70P32970 193 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 TM4SF4P48230 202 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 RPIAP49247 311 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 SIM2Q14190 667 aaPredicted RBP12.58□□□□□ -0.4
LDLR-207ENST00000558013 ATP13A5Q4VNC0 1218 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 CACHD1Q5VU97 1274 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 BROXQ5VW32 411 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 SNX29P2Q8IUI4 249 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 CHPFQ8IZ52 775 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 PNPT1Q8TCS8 783 aaKnown RBP12.58□□□□□ -0.4
LDLR-207ENST00000558013 FOXJ1Q92949 421 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 VOPP1Q96AW1 172 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 APIPQ96GX9 242 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 TMEFF2Q9UIK5 374 aaPredicted RBP12.58□□□□□ -0.4
LDLR-207ENST00000558013 PDE10AQ9Y233 779 aa12.58□□□□□ -0.4
LDLR-207ENST00000558013 TOR1BO14657 336 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 AOC2O75106 756 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ITPKAP23677 461 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ALDH4A1P30038 563 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CYP4F8P98187 520 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ELAVL2Q12926 359 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 CARD16Q5EG05 197 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 GTF2IRD2BQ6EKJ0 949 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 LAIR1Q6GTX8 287 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 GALNT18Q6P9A2 607 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CEP68Q76N32 757 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 TRIM46Q7Z4K8 759 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 GTF2IRD2Q86UP8 949 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 MICU2Q8IYU8 434 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 UBE2FQ969M7 185 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 CCDC115Q96NT0 180 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ATG10Q9H0Y0 220 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 PARVBQ9HBI1 364 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 DCAF13Q9NV06 445 aaKnown RBP12.57□□□□□ -0.4
LDLR-207ENST00000558013 C1orf109Q9NX04 203 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ABCG2Q9UNQ0 655 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 TRBV5-3A0A0A0MS03 114 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 DYTNA2CJ06 578 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 PER2O15055 1255 aa12.57□□□□□ -0.4
LDLR-207ENST00000558013 ABCB7O75027 752 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms